RNA–Protein interactions for RNA: ENST00000489352.5

HDAC6-233, Transcript of histone deacetylase 6, human

TSL 4

Gene HDAC6, Length 585 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
HDAC6-233	ENST00000489352	AFG1L	Q8WV93	481 aa		13.73	□□□□□ -0.21
HDAC6-233	ENST00000489352	NEK1	Q96PY6	1258 aa		13.73	□□□□□ -0.21
HDAC6-233	ENST00000489352	SH2B1	Q9NRF2	756 aa	Predicted RBP	13.73	□□□□□ -0.21
HDAC6-233	ENST00000489352	CCPG1	Q9ULG6	757 aa		13.73	□□□□□ -0.21
HDAC6-233	ENST00000489352	NOB1	Q9ULX3	412 aa	Known RBP	13.73	□□□□□ -0.21
HDAC6-233	ENST00000489352	PLAGL2	Q9UPG8	496 aa		13.73	□□□□□ -0.21
HDAC6-233	ENST00000489352	ADGRA3	Q8IWK6	1321 aa		13.72	□□□□□ -0.21
HDAC6-233	ENST00000489352	SURF6	O75683	361 aa	Known RBP	13.72	□□□□□ -0.21
HDAC6-233	ENST00000489352	MMP3	P08254	477 aa		13.72	□□□□□ -0.21
HDAC6-233	ENST00000489352	CCDC184	Q52MB2	194 aa		13.72	□□□□□ -0.21
HDAC6-233	ENST00000489352	ZC3H14	Q6PJT7	736 aa	Known RBP	13.72	□□□□□ -0.21
HDAC6-233	ENST00000489352	TRAF7	Q6Q0C0	670 aa		13.72	□□□□□ -0.21
HDAC6-233	ENST00000489352	STK11IP	Q8N1F8	1099 aa		13.72	□□□□□ -0.21
HDAC6-233	ENST00000489352	GNL3	Q9BVP2	549 aa	Known RBP eCLIP	13.72	□□□□□ -0.21
HDAC6-233	ENST00000489352	TLR7	Q9NYK1	1049 aa	Known RBP	13.72	□□□□□ -0.21
HDAC6-233	ENST00000489352	FASN	P49327	2511 aa	Known RBP	13.71	□□□□□ -0.21
HDAC6-233	ENST00000489352	MBD4	O95243	580 aa		13.71	□□□□□ -0.21
HDAC6-233	ENST00000489352	CALML3	P27482	149 aa		13.71	□□□□□ -0.21
HDAC6-233	ENST00000489352	PSEN2	P49810	448 aa		13.71	□□□□□ -0.21
HDAC6-233	ENST00000489352	KIAA0753	Q2KHM9	967 aa		13.71	□□□□□ -0.21
HDAC6-233	ENST00000489352	TRIM71	Q2Q1W2	868 aa	Known RBP	13.71	□□□□□ -0.21
HDAC6-233	ENST00000489352	CCDC105	Q8IYK2	499 aa		13.71	□□□□□ -0.21
HDAC6-233	ENST00000489352	DTWD2	Q8NBA8	298 aa		13.71	□□□□□ -0.21
HDAC6-233	ENST00000489352	GMCL1P1	Q8NEA9	526 aa		13.71	□□□□□ -0.21
HDAC6-233	ENST00000489352	STAG1	Q8WVM7	1258 aa		13.71	□□□□□ -0.21
HDAC6-233	ENST00000489352	SUSD6	Q92537	303 aa		13.71	□□□□□ -0.21
HDAC6-233	ENST00000489352	KAT2B	Q92831	832 aa		13.71	□□□□□ -0.21
HDAC6-233	ENST00000489352	APBB2	Q92870	758 aa		13.71	□□□□□ -0.21
HDAC6-233	ENST00000489352	CLP1	Q92989	425 aa	Known RBP	13.71	□□□□□ -0.21
HDAC6-233	ENST00000489352	P2RX5	Q93086	422 aa		13.71	□□□□□ -0.21
HDAC6-233	ENST00000489352	CHMP4C	Q96CF2	233 aa		13.71	□□□□□ -0.21
HDAC6-233	ENST00000489352	RTP3	Q9BQQ7	232 aa		13.71	□□□□□ -0.21
HDAC6-233	ENST00000489352		R4GN57	208 aa		13.71	□□□□□ -0.21
HDAC6-233	ENST00000489352	LOC101059915	A0A1B0GWI6	518 aa	Predicted RBP	13.7	□□□□□ -0.22
HDAC6-233	ENST00000489352	GLP2R	O95838	553 aa		13.7	□□□□□ -0.22
HDAC6-233	ENST00000489352	TTLL1	O95922	423 aa		13.7	□□□□□ -0.22
HDAC6-233	ENST00000489352	GH1	P01241	217 aa		13.7	□□□□□ -0.22
HDAC6-233	ENST00000489352	SLC1A4	P43007	532 aa		13.7	□□□□□ -0.22
HDAC6-233	ENST00000489352	SNAP25	P60880	206 aa		13.7	□□□□□ -0.22
HDAC6-233	ENST00000489352	DMWD	Q09019	674 aa		13.7	□□□□□ -0.22
HDAC6-233	ENST00000489352	MFSD10	Q14728	455 aa		13.7	□□□□□ -0.22
HDAC6-233	ENST00000489352	NAALADL2	Q58DX5	795 aa		13.7	□□□□□ -0.22
HDAC6-233	ENST00000489352	ZNF444	Q8N0Y2	327 aa	Predicted RBP	13.7	□□□□□ -0.22
HDAC6-233	ENST00000489352	MKL1	Q969V6	931 aa		13.7	□□□□□ -0.22
HDAC6-233	ENST00000489352	SYNPO2	Q9UMS6	1093 aa		13.7	□□□□□ -0.22
HDAC6-233	ENST00000489352	RBAK-RBAKDN	I3L0D1	243 aa		13.69	□□□□□ -0.22
HDAC6-233	ENST00000489352	STK25	O00506	426 aa		13.69	□□□□□ -0.22
HDAC6-233	ENST00000489352	AOC1	P19801	751 aa		13.69	□□□□□ -0.22
HDAC6-233	ENST00000489352	ZNF200	P98182	395 aa	Predicted RBP	13.69	□□□□□ -0.22
HDAC6-233	ENST00000489352	CAMK1	Q14012	370 aa		13.69	□□□□□ -0.22
HDAC6-233	ENST00000489352	CTR9	Q6PD62	1173 aa		13.69	□□□□□ -0.22
HDAC6-233	ENST00000489352	DCLK2	Q8N568	766 aa		13.69	□□□□□ -0.22
HDAC6-233	ENST00000489352	POF1B	Q8WVV4	589 aa		13.69	□□□□□ -0.22
HDAC6-233	ENST00000489352	WNT8B	Q93098	351 aa		13.69	□□□□□ -0.22
HDAC6-233	ENST00000489352	ZNF287	Q9HBT7	754 aa		13.69	□□□□□ -0.22
HDAC6-233	ENST00000489352	ARPP21	Q9UBL0	812 aa	Predicted RBP	13.69	□□□□□ -0.22
HDAC6-233	ENST00000489352	CDV3	Q9UKY7	258 aa	Known RBP	13.69	□□□□□ -0.22
HDAC6-233	ENST00000489352	SLC4A4	Q9Y6R1	1079 aa		13.69	□□□□□ -0.22
HDAC6-233	ENST00000489352	OTOGL	Q3ZCN5	2332 aa		13.69	□□□□□ -0.22
HDAC6-233	ENST00000489352	KIAA1671	Q9BY89	1806 aa		13.69	□□□□□ -0.22
HDAC6-233	ENST00000489352	SETX	Q7Z333	2677 aa	Known RBP	13.68	□□□□□ -0.22
HDAC6-233	ENST00000489352	KIAA1217	Q5T5P2	1943 aa		13.68	□□□□□ -0.22
HDAC6-233	ENST00000489352	PER2	O15055	1255 aa		13.68	□□□□□ -0.22
HDAC6-233	ENST00000489352	RASA1	P20936	1047 aa		13.68	□□□□□ -0.22
HDAC6-233	ENST00000489352	RFX1	P22670	979 aa		13.68	□□□□□ -0.22
HDAC6-233	ENST00000489352	DNAJB1	P25685	340 aa		13.68	□□□□□ -0.22
HDAC6-233	ENST00000489352	ATXN1	P54253	815 aa	Known RBP	13.68	□□□□□ -0.22
HDAC6-233	ENST00000489352	SPPL3	Q8TCT6	385 aa		13.68	□□□□□ -0.22
HDAC6-233	ENST00000489352	EAF2	Q96CJ1	260 aa	Predicted RBP	13.68	□□□□□ -0.22
HDAC6-233	ENST00000489352	CEP95	Q96GE4	821 aa		13.68	□□□□□ -0.22
HDAC6-233	ENST00000489352	APOL5	Q9BWW9	433 aa		13.68	□□□□□ -0.22
HDAC6-233	ENST00000489352	PLXNA4	Q9HCM2	1894 aa		13.67	□□□□□ -0.22
HDAC6-233	ENST00000489352	TCRBV5S4A2T	A0A5A2	114 aa		13.67	□□□□□ -0.22
HDAC6-233	ENST00000489352	GOLIM4	O00461	696 aa		13.67	□□□□□ -0.22
HDAC6-233	ENST00000489352	PI15	O43692	258 aa		13.67	□□□□□ -0.22
HDAC6-233	ENST00000489352	PPFIA3	O75145	1194 aa		13.67	□□□□□ -0.22
HDAC6-233	ENST00000489352	ITGB1	P05556	798 aa		13.67	□□□□□ -0.22
HDAC6-233	ENST00000489352	TEC	P42680	631 aa		13.67	□□□□□ -0.22
HDAC6-233	ENST00000489352	LY6K	Q17RY6	165 aa		13.67	□□□□□ -0.22
HDAC6-233	ENST00000489352	RNF207	Q6ZRF8	634 aa		13.67	□□□□□ -0.22
HDAC6-233	ENST00000489352	GPR161	Q8N6U8	529 aa	Known RBP	13.67	□□□□□ -0.22
HDAC6-233	ENST00000489352	DNAJC2	Q99543	621 aa	Known RBP	13.67	□□□□□ -0.22
HDAC6-233	ENST00000489352	CDCA3	Q99618	268 aa	Predicted RBP	13.67	□□□□□ -0.22
HDAC6-233	ENST00000489352	MRS2	Q9HD23	443 aa		13.67	□□□□□ -0.22
HDAC6-233	ENST00000489352	MTMR4	Q9NYA4	1195 aa		13.67	□□□□□ -0.22
HDAC6-233	ENST00000489352	MINDY4B	A8MYZ0	360 aa		13.66	□□□□□ -0.22
HDAC6-233	ENST00000489352	ARIH2	O95376	493 aa		13.66	□□□□□ -0.22
HDAC6-233	ENST00000489352	ICAM1	P05362	532 aa		13.66	□□□□□ -0.22
HDAC6-233	ENST00000489352	CTSH	P09668	335 aa		13.66	□□□□□ -0.22
HDAC6-233	ENST00000489352	LINC00271	P0C7V0	271 aa		13.66	□□□□□ -0.22
HDAC6-233	ENST00000489352	ZNF286B	P0CG31	522 aa		13.66	□□□□□ -0.22
HDAC6-233	ENST00000489352	MCC	P23508	829 aa		13.66	□□□□□ -0.22
HDAC6-233	ENST00000489352	COL9A3	Q14050	684 aa	Predicted RBP	13.66	□□□□□ -0.22
HDAC6-233	ENST00000489352	CES5A	Q6NT32	575 aa		13.66	□□□□□ -0.22
HDAC6-233	ENST00000489352	SEPT14	Q6ZU15	432 aa		13.66	□□□□□ -0.22
HDAC6-233	ENST00000489352	SERINC5	Q86VE9	423 aa		13.66	□□□□□ -0.22
HDAC6-233	ENST00000489352	KLHL23	Q8NBE8	558 aa		13.66	□□□□□ -0.22
HDAC6-233	ENST00000489352	DNER	Q8NFT8	737 aa		13.66	□□□□□ -0.22
HDAC6-233	ENST00000489352	ATP6V0A1	Q93050	837 aa		13.66	□□□□□ -0.22
HDAC6-233	ENST00000489352	DDX24	Q9GZR7	859 aa	Known RBP eCLIP	13.66	□□□□□ -0.22	2e-8	■■■■□ 25.3

Retrieved 100 of 20,778 RNA–protein pairs in 45 ms