RNA–Protein interactions for RNA: ENST00000488320.1

COL17A1-207, Transcript of collagen type XVII alpha 1 chain, humanhuman

TSL 5

Gene COL17A1, Length 626 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL17A1-207ENST00000488320 TRIOO75962 3097 aa10.91□□□□□ -0.66
COL17A1-207ENST00000488320 FRMPD2Q68DX3 1309 aaPredicted RBP10.91□□□□□ -0.66
COL17A1-207ENST00000488320 H0Y858 1186 aa10.91□□□□□ -0.66
COL17A1-207ENST00000488320 M0R2C6 588 aa10.91□□□□□ -0.66
COL17A1-207ENST00000488320 NMT2O60551 498 aa10.91□□□□□ -0.66
COL17A1-207ENST00000488320 PPARAQ07869 468 aa10.91□□□□□ -0.66
COL17A1-207ENST00000488320 ARHGAP1Q07960 439 aa10.91□□□□□ -0.66
COL17A1-207ENST00000488320 TRIM71Q2Q1W2 868 aaKnown RBP10.91□□□□□ -0.66
COL17A1-207ENST00000488320 PLEKHG4Q58EX7 1191 aa10.91□□□□□ -0.66
COL17A1-207ENST00000488320 CCDC62Q6P9F0 684 aa10.91□□□□□ -0.66
COL17A1-207ENST00000488320 TRAF7Q6Q0C0 670 aa10.91□□□□□ -0.66
COL17A1-207ENST00000488320 KBTBD3Q8NAB2 608 aa10.91□□□□□ -0.66
COL17A1-207ENST00000488320 WNT8BQ93098 351 aa10.91□□□□□ -0.66
COL17A1-207ENST00000488320 IL17RAQ96F46 866 aa10.91□□□□□ -0.66
COL17A1-207ENST00000488320 IFIH1Q9BYX4 1025 aaKnown RBP10.91□□□□□ -0.66
COL17A1-207ENST00000488320 TLR9Q9NR96 1032 aa10.91□□□□□ -0.66
COL17A1-207ENST00000488320 CFAP54Q96N23 3096 aa10.9□□□□□ -0.66
COL17A1-207ENST00000488320 GRM6O15303 877 aa10.9□□□□□ -0.66
COL17A1-207ENST00000488320 LINC01565O15544 149 aa10.9□□□□□ -0.66
COL17A1-207ENST00000488320 RANBP6O60518 1105 aaKnown RBP10.9□□□□□ -0.66
COL17A1-207ENST00000488320 ZFYP08048 801 aaPredicted RBP10.9□□□□□ -0.66
COL17A1-207ENST00000488320 ZNF286BP0CG31 522 aa10.9□□□□□ -0.66
COL17A1-207ENST00000488320 AVPR2P30518 371 aa10.9□□□□□ -0.66
COL17A1-207ENST00000488320 GTF2F1P35269 517 aaKnown RBP eCLIP10.9□□□□□ -0.66
COL17A1-207ENST00000488320 BMPR1AP36894 532 aa10.9□□□□□ -0.66
COL17A1-207ENST00000488320 SIGLEC14Q08ET2 396 aa10.9□□□□□ -0.66
COL17A1-207ENST00000488320 LAMC2Q13753 1193 aa10.9□□□□□ -0.66
COL17A1-207ENST00000488320 STXBP2Q15833 593 aa10.9□□□□□ -0.66
COL17A1-207ENST00000488320 BTNL9Q6UXG8 535 aa10.9□□□□□ -0.66
COL17A1-207ENST00000488320 PPP2R3CQ969Q6 453 aa10.9□□□□□ -0.66
COL17A1-207ENST00000488320 C11orf84Q9BUA3 381 aaPredicted RBP10.9□□□□□ -0.66
COL17A1-207ENST00000488320 INCENPQ9NQS7 918 aa10.9□□□□□ -0.66
COL17A1-207ENST00000488320 IL17RBQ9NRM6 502 aa10.9□□□□□ -0.66
COL17A1-207ENST00000488320 RWDD3Q9Y3V2 267 aa10.9□□□□□ -0.66
COL17A1-207ENST00000488320 RALGAPA2Q2PPJ7 1873 aa10.89□□□□□ -0.67
COL17A1-207ENST00000488320 ZDBF2Q9HCK1 2354 aa10.89□□□□□ -0.67
COL17A1-207ENST00000488320 TBX10O75333 385 aa10.89□□□□□ -0.67
COL17A1-207ENST00000488320 VCPP55072 806 aaKnown RBP10.89□□□□□ -0.67
COL17A1-207ENST00000488320 CTDSPL2Q05D32 466 aa10.89□□□□□ -0.67
COL17A1-207ENST00000488320 ADAM15Q13444 863 aa10.89□□□□□ -0.67
COL17A1-207ENST00000488320 USH1GQ495M9 461 aa10.89□□□□□ -0.67
COL17A1-207ENST00000488320 ERMP1Q7Z2K6 904 aa10.89□□□□□ -0.67
COL17A1-207ENST00000488320 PANK1Q8TE04 598 aa10.89□□□□□ -0.67
COL17A1-207ENST00000488320 ATP6V0A1Q93050 837 aa10.89□□□□□ -0.67
COL17A1-207ENST00000488320 RPGRIP1Q96KN7 1286 aa10.89□□□□□ -0.67
COL17A1-207ENST00000488320 TOMM22Q9NS69 142 aa10.89□□□□□ -0.67
COL17A1-207ENST00000488320 DDX41Q9UJV9 622 aaKnown RBP10.89□□□□□ -0.67
COL17A1-207ENST00000488320 TRPC6Q9Y210 931 aa10.89□□□□□ -0.67
COL17A1-207ENST00000488320 MRVI1Q9Y6F6 885 aa10.89□□□□□ -0.67
COL17A1-207ENST00000488320 ZFHX2Q9C0A1 2572 aaPredicted RBP10.88□□□□□ -0.67
COL17A1-207ENST00000488320 LOC101059915A0A1B0GWI6 518 aaPredicted RBP10.88□□□□□ -0.67
COL17A1-207ENST00000488320 C17orf102A2RUQ5 167 aa10.88□□□□□ -0.67
COL17A1-207ENST00000488320 LOC730098B7Z3J9 87 aa10.88□□□□□ -0.67
COL17A1-207ENST00000488320 HAS3O00219 553 aa10.88□□□□□ -0.67
COL17A1-207ENST00000488320 SMARCA5O60264 1052 aaPredicted RBP10.88□□□□□ -0.67
COL17A1-207ENST00000488320 SORBS3O60504 671 aa10.88□□□□□ -0.67
COL17A1-207ENST00000488320 KDM4AO75164 1064 aa10.88□□□□□ -0.67
COL17A1-207ENST00000488320 CTSHP09668 335 aa10.88□□□□□ -0.67
COL17A1-207ENST00000488320 ID4P47928 161 aa10.88□□□□□ -0.67
COL17A1-207ENST00000488320 ARHGEF16Q5VV41 709 aa10.88□□□□□ -0.67
COL17A1-207ENST00000488320 KMT2EQ8IZD2 1858 aa10.88□□□□□ -0.67
COL17A1-207ENST00000488320 NSUN6Q8TEA1 469 aaKnown RBP10.88□□□□□ -0.67
COL17A1-207ENST00000488320 TAAR1Q96RJ0 339 aa10.88□□□□□ -0.67
COL17A1-207ENST00000488320 LRRCC1Q9C099 1032 aa10.88□□□□□ -0.67
COL17A1-207ENST00000488320 ALG13Q9NP73 1137 aaKnown RBP10.88□□□□□ -0.67
COL17A1-207ENST00000488320 ECHDC1Q9NTX5 307 aa10.88□□□□□ -0.67
COL17A1-207ENST00000488320 KIAA1217Q5T5P2 1943 aa10.88□□□□□ -0.67
COL17A1-207ENST00000488320 PTPRZ1P23471 2315 aaPredicted RBP10.87□□□□□ -0.67
COL17A1-207ENST00000488320 MYO15AQ9UKN7 3530 aa10.87□□□□□ -0.67
COL17A1-207ENST00000488320 C5orf67F2Z3F1 127 aa10.87□□□□□ -0.67
COL17A1-207ENST00000488320 PPFIA4O75335 1185 aa10.87□□□□□ -0.67
COL17A1-207ENST00000488320 EYA4O95677 639 aa10.87□□□□□ -0.67
COL17A1-207ENST00000488320 F2P00734 622 aa10.87□□□□□ -0.67
COL17A1-207ENST00000488320 TOP1P11387 765 aaKnown RBP10.87□□□□□ -0.67
COL17A1-207ENST00000488320 RRP1P56182 461 aaKnown RBP10.87□□□□□ -0.67
COL17A1-207ENST00000488320 HIC1Q14526 733 aa10.87□□□□□ -0.67
COL17A1-207ENST00000488320 ASCL5Q7RTU5 278 aa10.87□□□□□ -0.67
COL17A1-207ENST00000488320 ZBTB33Q86T24 672 aa10.87□□□□□ -0.67
COL17A1-207ENST00000488320 SERINC5Q86VE9 423 aa10.87□□□□□ -0.67
COL17A1-207ENST00000488320 SIRT2Q8IXJ6 389 aa10.87□□□□□ -0.67
COL17A1-207ENST00000488320 RGS22Q8NE09 1264 aa10.87□□□□□ -0.67
COL17A1-207ENST00000488320 PPTC7Q8NI37 304 aa10.87□□□□□ -0.67
COL17A1-207ENST00000488320 APBB2Q92870 758 aa10.87□□□□□ -0.67
COL17A1-207ENST00000488320 EMID1Q96A84 441 aaPredicted RBP10.87□□□□□ -0.67
COL17A1-207ENST00000488320 GPATCH3Q96I76 525 aa10.87□□□□□ -0.67
COL17A1-207ENST00000488320 IWS1Q96ST2 819 aa10.87□□□□□ -0.67
COL17A1-207ENST00000488320 RMDN3Q96TC7 470 aa10.87□□□□□ -0.67
COL17A1-207ENST00000488320 SEC62Q99442 399 aaKnown RBP10.87□□□□□ -0.67
COL17A1-207ENST00000488320 TMEM47Q9BQJ4 181 aa10.87□□□□□ -0.67
COL17A1-207ENST00000488320 FSD1Q9BTV5 496 aa10.87□□□□□ -0.67
COL17A1-207ENST00000488320 ATG2AQ2TAZ0 1938 aa10.87□□□□□ -0.67
COL17A1-207ENST00000488320 DMDP11532 3685 aa10.87□□□□□ -0.67
COL17A1-207ENST00000488320 WDR19Q8NEZ3 1342 aa10.86□□□□□ -0.67
COL17A1-207ENST00000488320 EIF3JO75822 258 aaKnown RBP10.86□□□□□ -0.67
COL17A1-207ENST00000488320 EIF2AK2P19525 551 aaKnown RBP10.86□□□□□ -0.67
COL17A1-207ENST00000488320 BTG3Q14201 252 aaPredicted RBP10.86□□□□□ -0.67
COL17A1-207ENST00000488320 RRP12Q5JTH9 1297 aaKnown RBP10.86□□□□□ -0.67
COL17A1-207ENST00000488320 RBM23Q86U06 439 aaKnown RBP10.86□□□□□ -0.67
COL17A1-207ENST00000488320 TBC1D5Q92609 795 aa10.86□□□□□ -0.67
COL17A1-207ENST00000488320 MSLNLQ96KJ4 702 aa10.86□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 35.8 ms