RNA–Protein interactions for RNA: ENST00000473258.1

COL6A3-210, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 2

Gene COL6A3, Length 5,433 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-210ENST00000473258 PAIP1Q9H074 479 aaKnown RBP9.7□□□□□ -0.86
COL6A3-210ENST00000473258 CTIFO43310 598 aaKnown RBP9.69□□□□□ -0.86
COL6A3-210ENST00000473258 PRDM1O75626 825 aa9.69□□□□□ -0.86
COL6A3-210ENST00000473258 ZCCHC18P0CG32 403 aa9.69□□□□□ -0.86
COL6A3-210ENST00000473258 TRIM49P0CI25 452 aa9.69□□□□□ -0.86
COL6A3-210ENST00000473258 TRIM49CP0CI26 452 aa9.69□□□□□ -0.86
COL6A3-210ENST00000473258 NPR1P16066 1061 aa9.69□□□□□ -0.86
COL6A3-210ENST00000473258 PTGS2P35354 604 aa9.69□□□□□ -0.86
COL6A3-210ENST00000473258 TNNI2P48788 182 aa9.69□□□□□ -0.86
COL6A3-210ENST00000473258 CACNA2D1P54289 1103 aa9.69□□□□□ -0.86
COL6A3-210ENST00000473258 ZC3H12BQ5HYM0 836 aaKnown RBP9.69□□□□□ -0.86
COL6A3-210ENST00000473258 CDHR1Q96JP9 859 aa9.69□□□□□ -0.86
COL6A3-210ENST00000473258 OLFM1Q99784 485 aa9.69□□□□□ -0.86
COL6A3-210ENST00000473258 IMPG2Q9BZV3 1241 aa9.69□□□□□ -0.86
COL6A3-210ENST00000473258 CLEC4MQ9H2X3 399 aaPredicted RBP9.69□□□□□ -0.86
COL6A3-210ENST00000473258 TRIM45Q9H8W5 580 aaPredicted RBP9.69□□□□□ -0.86
COL6A3-210ENST00000473258 ATPIF1Q9UII2 106 aa9.69□□□□□ -0.86
COL6A3-210ENST00000473258 UTP18Q9Y5J1 556 aaKnown RBP eCLIP9.69□□□□□ -0.86
COL6A3-210ENST00000473258 SGSM2O43147 1006 aa9.69□□□□□ -0.86
COL6A3-210ENST00000473258 TOM1O60784 492 aa9.69□□□□□ -0.86
COL6A3-210ENST00000473258 FANCEQ9HB96 536 aa9.69□□□□□ -0.86
COL6A3-210ENST00000473258 CUTAO60888 179 aa9.69□□□□□ -0.86
COL6A3-210ENST00000473258 LDHAP00338 332 aaKnown RBP9.69□□□□□ -0.86
COL6A3-210ENST00000473258 EHHADHQ08426 723 aa9.69□□□□□ -0.86
COL6A3-210ENST00000473258 PREPLQ4J6C6 727 aaPredicted RBP9.69□□□□□ -0.86
COL6A3-210ENST00000473258 TJAP1Q5JTD0 557 aa9.69□□□□□ -0.86
COL6A3-210ENST00000473258 LIN9Q5TKA1 542 aa9.69□□□□□ -0.86
COL6A3-210ENST00000473258 DZIP3Q86Y13 1208 aaKnown RBP9.69□□□□□ -0.86
COL6A3-210ENST00000473258 TRMT44Q8IYL2 757 aaKnown RBP9.69□□□□□ -0.86
COL6A3-210ENST00000473258 KIFC2Q96AC6 838 aa9.69□□□□□ -0.86
COL6A3-210ENST00000473258 BLOC1S6Q9UL45 172 aa9.69□□□□□ -0.86
COL6A3-210ENST00000473258 KDM2BQ8NHM5 1336 aa9.69□□□□□ -0.86
COL6A3-210ENST00000473258 MINDY4BA8MYZ0 360 aa9.69□□□□□ -0.86
COL6A3-210ENST00000473258 ZPR1O75312 459 aa9.69□□□□□ -0.86
COL6A3-210ENST00000473258 IFNB1P01574 187 aa9.69□□□□□ -0.86
COL6A3-210ENST00000473258 IFIT1P09914 478 aaKnown RBP9.69□□□□□ -0.86
COL6A3-210ENST00000473258 ARHGDIAP52565 204 aa9.69□□□□□ -0.86
COL6A3-210ENST00000473258 GIPC2Q8TF65 315 aa9.69□□□□□ -0.86
COL6A3-210ENST00000473258 ZNF287Q9HBT7 754 aa9.69□□□□□ -0.86
COL6A3-210ENST00000473258 HPS5Q9UPZ3 1129 aa9.69□□□□□ -0.86
COL6A3-210ENST00000473258 STMND1H3BQB6 276 aa9.69□□□□□ -0.86
COL6A3-210ENST00000473258 GPTP24298 496 aa9.69□□□□□ -0.86
COL6A3-210ENST00000473258 TMOD1P28289 359 aa9.69□□□□□ -0.86
COL6A3-210ENST00000473258 DCAF17Q5H9S7 520 aaPredicted RBP9.69□□□□□ -0.86
COL6A3-210ENST00000473258 NOSTRINQ8IVI9 506 aa9.69□□□□□ -0.86
COL6A3-210ENST00000473258 FAM9CQ8IZT9 166 aa9.69□□□□□ -0.86
COL6A3-210ENST00000473258 SEPT1Q8WYJ6 367 aa9.69□□□□□ -0.86
COL6A3-210ENST00000473258 SEC16BQ96JE7 1060 aa9.69□□□□□ -0.86
COL6A3-210ENST00000473258 FANCLQ9NW38 375 aa9.69□□□□□ -0.86
COL6A3-210ENST00000473258 CCT8L1PA6NM43 557 aa9.68□□□□□ -0.86
COL6A3-210ENST00000473258 GSTA1P08263 222 aa9.68□□□□□ -0.86
COL6A3-210ENST00000473258 GABPAQ06546 454 aa9.68□□□□□ -0.86
COL6A3-210ENST00000473258 TRIP10Q15642 601 aa9.68□□□□□ -0.86
COL6A3-210ENST00000473258 LRRC36Q1X8D7 754 aa9.68□□□□□ -0.86
COL6A3-210ENST00000473258 KLHL12Q53G59 568 aa9.68□□□□□ -0.86
COL6A3-210ENST00000473258 TRPM8Q7Z2W7 1104 aa9.68□□□□□ -0.86
COL6A3-210ENST00000473258 GPR141Q7Z602 305 aa9.68□□□□□ -0.86
COL6A3-210ENST00000473258 CD209Q9NNX6 404 aa9.68□□□□□ -0.86
COL6A3-210ENST00000473258 SOX13Q9UN79 622 aa9.68□□□□□ -0.86
COL6A3-210ENST00000473258 C15orf41Q9Y2V0 281 aa9.68□□□□□ -0.86
COL6A3-210ENST00000473258 SPEF1Q9Y4P9 236 aa9.68□□□□□ -0.86
COL6A3-210ENST00000473258 RANBP6O60518 1105 aaKnown RBP9.68□□□□□ -0.86
COL6A3-210ENST00000473258 MARK3P27448 753 aa9.68□□□□□ -0.86
COL6A3-210ENST00000473258 RBM6P78332 1123 aaKnown RBP9.68□□□□□ -0.86
COL6A3-210ENST00000473258 RUNX1T1Q06455 604 aa9.68□□□□□ -0.86
COL6A3-210ENST00000473258 POSTNQ15063 836 aa9.68□□□□□ -0.86
COL6A3-210ENST00000473258 TTLL7Q6ZT98 887 aa9.68□□□□□ -0.86
COL6A3-210ENST00000473258 DNAJC5Q9H3Z4 198 aa9.68□□□□□ -0.86
COL6A3-210ENST00000473258 HDAC6Q9UBN7 1215 aa9.68□□□□□ -0.86
COL6A3-210ENST00000473258 SAP30BPQ9UHR5 308 aaKnown RBP9.68□□□□□ -0.86
COL6A3-210ENST00000473258 PGRMC1O00264 195 aaKnown RBP9.68□□□□□ -0.86
COL6A3-210ENST00000473258 SNPHO15079 494 aa9.68□□□□□ -0.86
COL6A3-210ENST00000473258 CLPTM1O96005 669 aa9.68□□□□□ -0.86
COL6A3-210ENST00000473258 PRR29P0C7W0 189 aa9.68□□□□□ -0.86
COL6A3-210ENST00000473258 DEPDC1Q5TB30 811 aa9.68□□□□□ -0.86
COL6A3-210ENST00000473258 AHI1Q8N157 1196 aa9.68□□□□□ -0.86
COL6A3-210ENST00000473258 SIX6OS1Q8N1H7 587 aa9.68□□□□□ -0.86
COL6A3-210ENST00000473258 CUEDC2Q9H467 287 aa9.68□□□□□ -0.86
COL6A3-210ENST00000473258 FAM96AQ9H5X1 160 aa9.68□□□□□ -0.86
COL6A3-210ENST00000473258 METTL14Q9HCE5 456 aaKnown RBP9.68□□□□□ -0.86
COL6A3-210ENST00000473258 SOGA1O94964 1423 aa9.68□□□□□ -0.86
COL6A3-210ENST00000473258 F8VZ95 297 aa9.68□□□□□ -0.86
COL6A3-210ENST00000473258 H3BRJ5 948 aa9.68□□□□□ -0.86
COL6A3-210ENST00000473258 PGM3O95394 542 aa9.68□□□□□ -0.86
COL6A3-210ENST00000473258 FAM107AO95990 144 aa9.68□□□□□ -0.86
COL6A3-210ENST00000473258 MT-ND3P03897 115 aa9.68□□□□□ -0.86
COL6A3-210ENST00000473258 POLR2EP19388 210 aaKnown RBP9.68□□□□□ -0.86
COL6A3-210ENST00000473258 DNM2P50570 870 aa9.68□□□□□ -0.86
COL6A3-210ENST00000473258 PLCD1P51178 756 aa9.68□□□□□ -0.86
COL6A3-210ENST00000473258 C21orf59P57076 290 aa9.68□□□□□ -0.86
COL6A3-210ENST00000473258 SLC7A5Q01650 507 aa9.68□□□□□ -0.86
COL6A3-210ENST00000473258 HIC1Q14526 733 aa9.68□□□□□ -0.86
COL6A3-210ENST00000473258 TMEM63BQ5T3F8 832 aa9.68□□□□□ -0.86
COL6A3-210ENST00000473258 TSHZ3Q63HK5 1081 aa9.68□□□□□ -0.86
COL6A3-210ENST00000473258 LRRC31Q6UY01 552 aa9.68□□□□□ -0.86
COL6A3-210ENST00000473258 CRLF3Q8IUI8 442 aa9.68□□□□□ -0.86
COL6A3-210ENST00000473258 TRIM59Q8IWR1 403 aa9.68□□□□□ -0.86
COL6A3-210ENST00000473258 GALNT6Q8NCL4 622 aa9.68□□□□□ -0.86
COL6A3-210ENST00000473258 SLC10A4Q96EP9 437 aa9.68□□□□□ -0.86
COL6A3-210ENST00000473258 USP28Q96RU2 1077 aa9.68□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 37 ms