RNA–Protein interactions for RNA: ENST00000472056.5

COL6A3-209, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 1 (best) BASIC

Gene COL6A3, Length 8,628 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-209ENST00000472056 IRS4O14654 1257 aaPredicted RBP14.35□□□□□ -0.11
COL6A3-209ENST00000472056 YWHAGP61981 247 aaKnown RBP eCLIP14.35□□□□□ -0.11
COL6A3-209ENST00000472056 GRAMD1BQ3KR37 738 aa14.35□□□□□ -0.11
COL6A3-209ENST00000472056 ENOX1Q8TC92 643 aaKnown RBP14.35□□□□□ -0.11
COL6A3-209ENST00000472056 SIRT1Q96EB6 747 aa14.35□□□□□ -0.11
COL6A3-209ENST00000472056 CNOT6LQ96LI5 555 aaKnown RBP14.35□□□□□ -0.11
COL6A3-209ENST00000472056 SUN2Q9UH99 717 aa14.35□□□□□ -0.11
COL6A3-209ENST00000472056 PPME1Q9Y570 386 aa14.35□□□□□ -0.11
COL6A3-209ENST00000472056 SEC24BO95487 1268 aa14.35□□□□□ -0.11
COL6A3-209ENST00000472056 MORF4L2Q15014 288 aa14.35□□□□□ -0.11
COL6A3-209ENST00000472056 MAPRE2Q15555 327 aa14.35□□□□□ -0.11
COL6A3-209ENST00000472056 C16orf71Q8IYS4 520 aaPredicted RBP14.35□□□□□ -0.11
COL6A3-209ENST00000472056 ACAD11Q709F0 780 aa14.35□□□□□ -0.11
COL6A3-209ENST00000472056 TTC13Q8NBP0 860 aa14.35□□□□□ -0.11
COL6A3-209ENST00000472056 MTMR6Q9Y217 621 aa14.35□□□□□ -0.11
COL6A3-209ENST00000472056 ABCC4O15439 1325 aa14.35□□□□□ -0.11
COL6A3-209ENST00000472056 CAPN9O14815 690 aa14.35□□□□□ -0.11
COL6A3-209ENST00000472056 HNRNPCP07910 306 aaKnown RBP eCLIP14.35□□□□□ -0.11
COL6A3-209ENST00000472056 SURF1Q15526 300 aa14.35□□□□□ -0.11
COL6A3-209ENST00000472056 ARL6IP4Q66PJ3 421 aaKnown RBP14.35□□□□□ -0.11
COL6A3-209ENST00000472056 SLC35F6Q8N357 371 aa14.35□□□□□ -0.11
COL6A3-209ENST00000472056 DTX3LQ8TDB6 740 aa14.35□□□□□ -0.11
COL6A3-209ENST00000472056 PARD6BQ9BYG5 372 aa14.35□□□□□ -0.11
COL6A3-209ENST00000472056 ZBTB12Q9Y330 459 aaPredicted RBP14.35□□□□□ -0.11
COL6A3-209ENST00000472056 ABCB4P21439 1286 aa14.35□□□□□ -0.11
COL6A3-209ENST00000472056 GCOM2Q9BZD3 368 aaPredicted RBP14.35□□□□□ -0.11
COL6A3-209ENST00000472056 TMEM206Q9H813 350 aa14.35□□□□□ -0.11
COL6A3-209ENST00000472056 E7ENQ6 273 aa14.35□□□□□ -0.11
COL6A3-209ENST00000472056 SLC30A9Q6PML9 568 aa14.35□□□□□ -0.11
COL6A3-209ENST00000472056 NLRX1Q86UT6 975 aa14.35□□□□□ -0.11
COL6A3-209ENST00000472056 PARP9Q8IXQ6 854 aa14.35□□□□□ -0.11
COL6A3-209ENST00000472056 NLRC4Q9NPP4 1024 aa14.35□□□□□ -0.11
COL6A3-209ENST00000472056 EIF2AK3Q9NZJ5 1116 aaKnown RBP14.35□□□□□ -0.11
COL6A3-209ENST00000472056 NDUFA13Q9P0J0 144 aa14.35□□□□□ -0.11
COL6A3-209ENST00000472056 KLC1Q07866 573 aa14.34□□□□□ -0.11
COL6A3-209ENST00000472056 KLHL38Q2WGJ6 581 aa14.34□□□□□ -0.11
COL6A3-209ENST00000472056 NDUFA10O95299 355 aa14.34□□□□□ -0.11
COL6A3-209ENST00000472056 LRMPQ12912 555 aa14.34□□□□□ -0.11
COL6A3-209ENST00000472056 VPS39Q96JC1 886 aa14.34□□□□□ -0.11
COL6A3-209ENST00000472056 MRPS25P82663 173 aaKnown RBP14.34□□□□□ -0.11
COL6A3-209ENST00000472056 MRPS35P82673 323 aaKnown RBP14.34□□□□□ -0.11
COL6A3-209ENST00000472056 POTEAQ6S8J7 498 aa14.34□□□□□ -0.11
COL6A3-209ENST00000472056 OSBPL3Q9H4L5 887 aa14.34□□□□□ -0.11
COL6A3-209ENST00000472056 MYCNP04198 464 aaPredicted RBP14.34□□□□□ -0.11
COL6A3-209ENST00000472056 SMARCA1P28370 1054 aa14.34□□□□□ -0.11
COL6A3-209ENST00000472056 CEP70Q8NHQ1 597 aa14.34□□□□□ -0.11
COL6A3-209ENST00000472056 NIP7Q9Y221 180 aaKnown RBP eCLIP14.34□□□□□ -0.11
COL6A3-209ENST00000472056 ARHGEF5Q12774 1597 aa14.34□□□□□ -0.11
COL6A3-209ENST00000472056 PSMC2P35998 433 aaKnown RBP14.34□□□□□ -0.11
COL6A3-209ENST00000472056 SKOR1P84550 965 aa14.34□□□□□ -0.11
COL6A3-209ENST00000472056 ADAM9Q13443 819 aa14.34□□□□□ -0.11
COL6A3-209ENST00000472056 ADPGKQ9BRR6 497 aa14.34□□□□□ -0.11
COL6A3-209ENST00000472056 ANXA13P27216 316 aa14.34□□□□□ -0.11
COL6A3-209ENST00000472056 EDEM3Q9BZQ6 932 aa14.34□□□□□ -0.11
COL6A3-209ENST00000472056 RSPH10B2B2RC85 870 aa14.33□□□□□ -0.11
COL6A3-209ENST00000472056 RSPH10BP0C881 870 aa14.33□□□□□ -0.11
COL6A3-209ENST00000472056 TRMT1LQ7Z2T5 733 aaKnown RBP14.33□□□□□ -0.11
COL6A3-209ENST00000472056 ZNF654Q8IZM8 581 aa14.33□□□□□ -0.11
COL6A3-209ENST00000472056 CHURC1Q8WUH1 139 aa14.33□□□□□ -0.11
COL6A3-209ENST00000472056 DMRT2Q9Y5R5 561 aa14.33□□□□□ -0.11
COL6A3-209ENST00000472056 KPNA7A9QM74 516 aa14.33□□□□□ -0.11
COL6A3-209ENST00000472056 NDUFA8P51970 172 aa14.33□□□□□ -0.11
COL6A3-209ENST00000472056 E2F5Q15329 346 aa14.33□□□□□ -0.11
COL6A3-209ENST00000472056 TBCCQ15814 346 aa14.33□□□□□ -0.11
COL6A3-209ENST00000472056 SLC5A4Q9NY91 659 aa14.33□□□□□ -0.11
COL6A3-209ENST00000472056 PSD3Q9NYI0 1048 aa14.33□□□□□ -0.11
COL6A3-209ENST00000472056 KDRP35968 1356 aa14.33□□□□□ -0.12
COL6A3-209ENST00000472056 SPHKAPQ2M3C7 1700 aa14.33□□□□□ -0.12
COL6A3-209ENST00000472056 OATP04181 439 aa14.33□□□□□ -0.12
COL6A3-209ENST00000472056 CUL3Q13618 768 aa14.33□□□□□ -0.12
COL6A3-209ENST00000472056 TAF1BQ53T94 588 aaPredicted RBP14.33□□□□□ -0.12
COL6A3-209ENST00000472056 STX19Q8N4C7 294 aa14.33□□□□□ -0.12
COL6A3-209ENST00000472056 SLC13A4Q9UKG4 626 aa14.33□□□□□ -0.12
COL6A3-209ENST00000472056 PCDHA7Q9UN72 937 aa14.33□□□□□ -0.12
COL6A3-209ENST00000472056 KDM1AO60341 852 aa14.33□□□□□ -0.12
COL6A3-209ENST00000472056 ATP2B4P23634 1241 aa14.33□□□□□ -0.12
COL6A3-209ENST00000472056 DEFA1P59665 94 aa14.33□□□□□ -0.12
COL6A3-209ENST00000472056 DEFA3P59666 94 aa14.33□□□□□ -0.12
COL6A3-209ENST00000472056 ZBTB18Q99592 522 aa14.33□□□□□ -0.12
COL6A3-209ENST00000472056 KLC4Q9NSK0 619 aa14.33□□□□□ -0.12
COL6A3-209ENST00000472056 TNNQ9UQP3 1299 aa14.33□□□□□ -0.12
COL6A3-209ENST00000472056 RPAP1Q9BWH6 1393 aaPredicted RBP14.33□□□□□ -0.12
COL6A3-209ENST00000472056 PDE8AO60658 829 aa14.33□□□□□ -0.12
COL6A3-209ENST00000472056 ZSCAN10Q96SZ4 725 aaPredicted RBP14.33□□□□□ -0.12
COL6A3-209ENST00000472056 TRIM45Q9H8W5 580 aaPredicted RBP14.33□□□□□ -0.12
COL6A3-209ENST00000472056 AFPP02771 609 aaKnown RBP14.33□□□□□ -0.12
COL6A3-209ENST00000472056 RASSF7Q02833 373 aa14.33□□□□□ -0.12
COL6A3-209ENST00000472056 FLOT2Q14254 428 aa14.33□□□□□ -0.12
COL6A3-209ENST00000472056 ABCF3Q9NUQ8 709 aa14.33□□□□□ -0.12
COL6A3-209ENST00000472056 MYL7Q01449 175 aa14.33□□□□□ -0.12
COL6A3-209ENST00000472056 EIF4A2Q14240 407 aaKnown RBP14.33□□□□□ -0.12
COL6A3-209ENST00000472056 NUDCD1Q96RS6 583 aa14.33□□□□□ -0.12
COL6A3-209ENST00000472056 MRFAP1Q9Y605 127 aa14.33□□□□□ -0.12
COL6A3-209ENST00000472056 TMCC1O94876 653 aa14.32□□□□□ -0.12
COL6A3-209ENST00000472056 ADGRL2O95490 1459 aa14.32□□□□□ -0.12
COL6A3-209ENST00000472056 PICALMQ13492 652 aa14.32□□□□□ -0.12
COL6A3-209ENST00000472056 NBPF3Q9H094 633 aa14.32□□□□□ -0.12
COL6A3-209ENST00000472056 KPNB1Q14974 876 aaKnown RBP14.32□□□□□ -0.12
COL6A3-209ENST00000472056 RBM17Q96I25 401 aaKnown RBP14.32□□□□□ -0.12
COL6A3-209ENST00000472056 DDX25Q9UHL0 483 aaKnown RBP14.32□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 22.2 ms