RNA–Protein interactions for RNA: ENST00000471834.1

SYNE1-220, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 7,229 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-220ENST00000471834 TMEM119Q4V9L6 283 aa5.91□□□□□ -1.46
SYNE1-220ENST00000471834 TEX11Q8IYF3 940 aa5.91□□□□□ -1.46
SYNE1-220ENST00000471834 ZNF654Q8IZM8 581 aa5.91□□□□□ -1.46
SYNE1-220ENST00000471834 ATP8B4Q8TF62 1192 aa5.91□□□□□ -1.46
SYNE1-220ENST00000471834 JAKMIP2Q96AA8 810 aa5.91□□□□□ -1.46
SYNE1-220ENST00000471834 CNOT10Q9H9A5 744 aaKnown RBP5.91□□□□□ -1.46
SYNE1-220ENST00000471834 SSU72Q9NP77 194 aaKnown RBP5.91□□□□□ -1.46
SYNE1-220ENST00000471834 RIC8AQ9NPQ8 531 aa5.91□□□□□ -1.46
SYNE1-220ENST00000471834 NEU2Q9Y3R4 380 aa5.91□□□□□ -1.46
SYNE1-220ENST00000471834 CASZ1Q86V15 1759 aa5.91□□□□□ -1.46
SYNE1-220ENST00000471834 NHSQ6T4R5 1651 aa5.91□□□□□ -1.46
SYNE1-220ENST00000471834 CFAP73A6NFT4 308 aa5.91□□□□□ -1.46
SYNE1-220ENST00000471834 CYLC1P35663 651 aaPredicted RBP5.91□□□□□ -1.46
SYNE1-220ENST00000471834 C10orf76Q5T2E6 689 aa5.91□□□□□ -1.46
SYNE1-220ENST00000471834 CYB5D1Q6P9G0 228 aa5.91□□□□□ -1.46
SYNE1-220ENST00000471834 STON2Q8WXE9 905 aa5.91□□□□□ -1.46
SYNE1-220ENST00000471834 DNAJC19Q96DA6 116 aa5.91□□□□□ -1.46
SYNE1-220ENST00000471834 RNF41Q9H4P4 317 aaPredicted RBP5.91□□□□□ -1.46
SYNE1-220ENST00000471834 SLC5A4Q9NY91 659 aa5.91□□□□□ -1.46
SYNE1-220ENST00000471834 LGALS13Q9UHV8 139 aa5.91□□□□□ -1.46
SYNE1-220ENST00000471834 ATF5Q9Y2D1 282 aaPredicted RBP5.91□□□□□ -1.46
SYNE1-220ENST00000471834 PARP1P09874 1014 aaKnown RBP5.91□□□□□ -1.46
SYNE1-220ENST00000471834 ZNF569Q5MCW4 686 aa5.91□□□□□ -1.46
SYNE1-220ENST00000471834 DUPD1Q68J44 220 aa5.91□□□□□ -1.46
SYNE1-220ENST00000471834 MPRIPQ6WCQ1 1025 aa5.91□□□□□ -1.46
SYNE1-220ENST00000471834 EHD4Q9H223 541 aa5.91□□□□□ -1.46
SYNE1-220ENST00000471834 PITPNM2Q9BZ72 1349 aa5.91□□□□□ -1.46
SYNE1-220ENST00000471834 ANKRD62A6NC57 917 aa5.91□□□□□ -1.46
SYNE1-220ENST00000471834 GOLGA6CA6NDK9 693 aa5.91□□□□□ -1.46
SYNE1-220ENST00000471834 BTBD19C9JJ37 291 aa5.91□□□□□ -1.46
SYNE1-220ENST00000471834 GOLGA6DP0CG33 693 aa5.91□□□□□ -1.46
SYNE1-220ENST00000471834 FXR2P51116 673 aaKnown RBP eCLIP5.91□□□□□ -1.46
SYNE1-220ENST00000471834 GHRHRQ02643 423 aa5.91□□□□□ -1.46
SYNE1-220ENST00000471834 PSMD2Q13200 908 aa5.91□□□□□ -1.46
SYNE1-220ENST00000471834 EPM2AIP1Q7L775 607 aaPredicted RBP5.91□□□□□ -1.46
SYNE1-220ENST00000471834 SLF1Q9BQI6 1058 aa5.91□□□□□ -1.46
SYNE1-220ENST00000471834 GOLGA6AQ9NYA3 693 aa5.91□□□□□ -1.46
SYNE1-220ENST00000471834 BCCIPQ9P287 314 aaKnown RBP eCLIP5.91□□□□□ -1.46
SYNE1-220ENST00000471834 MROH5Q6ZUA9 1318 aa5.91□□□□□ -1.46
SYNE1-220ENST00000471834 KCNJ18B7U540 433 aa5.9□□□□□ -1.46
SYNE1-220ENST00000471834 AHCYL1O43865 530 aa5.9□□□□□ -1.46
SYNE1-220ENST00000471834 INPP5BP32019 993 aa5.9□□□□□ -1.46
SYNE1-220ENST00000471834 KCNJ12Q14500 433 aa5.9□□□□□ -1.46
SYNE1-220ENST00000471834 ALDH16A1Q8IZ83 802 aa5.9□□□□□ -1.46
SYNE1-220ENST00000471834 JDP2Q8WYK2 163 aa5.9□□□□□ -1.46
SYNE1-220ENST00000471834 CYFIP2Q96F07 1278 aa5.9□□□□□ -1.46
SYNE1-220ENST00000471834 MXD3Q9BW11 206 aa5.9□□□□□ -1.46
SYNE1-220ENST00000471834 PUS3Q9BZE2 481 aaKnown RBP5.9□□□□□ -1.46
SYNE1-220ENST00000471834 ZNF408Q9H9D4 720 aa5.9□□□□□ -1.46
SYNE1-220ENST00000471834 NLRC4Q9NPP4 1024 aa5.9□□□□□ -1.46
SYNE1-220ENST00000471834 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP5.9□□□□□ -1.46
SYNE1-220ENST00000471834 AFF2P51816 1311 aa5.9□□□□□ -1.46
SYNE1-220ENST00000471834 IVDP26440 423 aa5.9□□□□□ -1.46
SYNE1-220ENST00000471834 ZAP70P43403 619 aa5.9□□□□□ -1.46
SYNE1-220ENST00000471834 GUCY2DQ02846 1103 aa5.9□□□□□ -1.46
SYNE1-220ENST00000471834 ENOX2Q16206 610 aaKnown RBP5.9□□□□□ -1.46
SYNE1-220ENST00000471834 ANKRD20A8PQ5CZ79 823 aa5.9□□□□□ -1.46
SYNE1-220ENST00000471834 CFAP58Q5T655 872 aa5.9□□□□□ -1.46
SYNE1-220ENST00000471834 ZNF473Q8WTR7 871 aaKnown RBP5.9□□□□□ -1.46
SYNE1-220ENST00000471834 LRRC1Q9BTT6 524 aa5.9□□□□□ -1.46
SYNE1-220ENST00000471834 DEF6Q9H4E7 631 aa5.9□□□□□ -1.46
SYNE1-220ENST00000471834 RGPD8O14715 1765 aaPredicted RBP5.9□□□□□ -1.46
SYNE1-220ENST00000471834 CDC25AP30304 524 aa5.9□□□□□ -1.46
SYNE1-220ENST00000471834 SLC8A1P32418 973 aa5.9□□□□□ -1.46
SYNE1-220ENST00000471834 PPP4CP60510 307 aa5.9□□□□□ -1.46
SYNE1-220ENST00000471834 PAK2Q13177 524 aa5.9□□□□□ -1.46
SYNE1-220ENST00000471834 SLC18A3Q16572 532 aa5.9□□□□□ -1.46
SYNE1-220ENST00000471834 ZNF827Q17R98 1081 aa5.9□□□□□ -1.46
SYNE1-220ENST00000471834 B3GNT9Q6UX72 402 aa5.9□□□□□ -1.46
SYNE1-220ENST00000471834 NLRP14Q86W24 1093 aa5.9□□□□□ -1.46
SYNE1-220ENST00000471834 OXER1Q8TDS5 423 aa5.9□□□□□ -1.46
SYNE1-220ENST00000471834 EPSTI1Q96J88 318 aa5.9□□□□□ -1.46
SYNE1-220ENST00000471834 LRRC2Q9BYS8 371 aa5.9□□□□□ -1.46
SYNE1-220ENST00000471834 TSGA10Q9BZW7 698 aa5.9□□□□□ -1.46
SYNE1-220ENST00000471834 KLC4Q9NSK0 619 aa5.9□□□□□ -1.46
SYNE1-220ENST00000471834 PCDH11XQ9BZA7 1347 aa5.9□□□□□ -1.46
SYNE1-220ENST00000471834 MAST2Q6P0Q8 1798 aa5.9□□□□□ -1.47
SYNE1-220ENST00000471834 ENO4A6NNW6 628 aa5.9□□□□□ -1.47
SYNE1-220ENST00000471834 ZNF213O14771 459 aa5.9□□□□□ -1.47
SYNE1-220ENST00000471834 TBC1D8BQ0IIM8 1120 aa5.9□□□□□ -1.47
SYNE1-220ENST00000471834 USP41Q3LFD5 358 aa5.9□□□□□ -1.47
SYNE1-220ENST00000471834 GBP7Q8N8V2 638 aaPredicted RBP5.9□□□□□ -1.47
SYNE1-220ENST00000471834 DENND1AQ8TEH3 1009 aa5.9□□□□□ -1.47
SYNE1-220ENST00000471834 RIN2Q8WYP3 895 aaPredicted RBP5.9□□□□□ -1.47
SYNE1-220ENST00000471834 DDX24Q9GZR7 859 aaKnown RBP eCLIP5.9□□□□□ -1.47
SYNE1-220ENST00000471834 RBM28Q9NW13 759 aaKnown RBP5.9□□□□□ -1.47
SYNE1-220ENST00000471834 UBE2Q2LH0YL09 131 aa5.9□□□□□ -1.47
SYNE1-220ENST00000471834 LBRQ14739 615 aaKnown RBP5.9□□□□□ -1.47
SYNE1-220ENST00000471834 SF3B3Q15393 1217 aaKnown RBP5.9□□□□□ -1.47
SYNE1-220ENST00000471834 SKIV2LQ15477 1246 aaKnown RBP5.9□□□□□ -1.47
SYNE1-220ENST00000471834 TYW1BQ6NUM6 668 aa5.9□□□□□ -1.47
SYNE1-220ENST00000471834 UNC13DQ70J99 1090 aa5.9□□□□□ -1.47
SYNE1-220ENST00000471834 SESTD1Q86VW0 696 aa5.9□□□□□ -1.47
SYNE1-220ENST00000471834 F8VZ95 297 aa5.9□□□□□ -1.47
SYNE1-220ENST00000471834 H0YHG0 523 aa5.9□□□□□ -1.47
SYNE1-220ENST00000471834 NR5A1Q13285 461 aa5.9□□□□□ -1.47
SYNE1-220ENST00000471834 IRF2BP2Q7Z5L9 587 aa5.9□□□□□ -1.47
SYNE1-220ENST00000471834 ENAHQ8N8S7 591 aaPredicted RBP5.9□□□□□ -1.47
SYNE1-220ENST00000471834 P2RX5Q93086 422 aa5.9□□□□□ -1.47
SYNE1-220ENST00000471834 CYLDQ9NQC7 956 aa5.9□□□□□ -1.47
Retrieved 100 of 20,778 RNA–protein pairs in 16.1 ms