RNA–Protein interactions for RNA: ENST00000465339.5

COL28A1-206, Transcript of collagen type XXVIII alpha 1 chain, humanhuman

TSL 3

Gene COL28A1, Length 722 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1-206ENST00000465339 HS6ST3Q8IZP7 471 aa14.97□□□□□ -0.01
COL28A1-206ENST00000465339 RNF26Q9BY78 433 aaPredicted RBP14.97□□□□□ -0.01
COL28A1-206ENST00000465339 RIC8AQ9NPQ8 531 aa14.97□□□□□ -0.01
COL28A1-206ENST00000465339 MRVI1Q9Y6F6 885 aa14.97□□□□□ -0.01
COL28A1-206ENST00000465339 SMCO2A6NFE2 343 aa14.96□□□□□ -0.01
COL28A1-206ENST00000465339 SPDYE3A6NKU9 549 aa14.96□□□□□ -0.01
COL28A1-206ENST00000465339 STXBP3O00186 592 aa14.96□□□□□ -0.01
COL28A1-206ENST00000465339 ARVCFO00192 962 aa14.96□□□□□ -0.01
COL28A1-206ENST00000465339 RGS20O76081 388 aa14.96□□□□□ -0.01
COL28A1-206ENST00000465339 FOSP01100 380 aaPredicted RBP14.96□□□□□ -0.01
COL28A1-206ENST00000465339 SYN1P17600 705 aa14.96□□□□□ -0.01
COL28A1-206ENST00000465339 PTGS1P23219 599 aa14.96□□□□□ -0.01
COL28A1-206ENST00000465339 ADCY7P51828 1080 aa14.96□□□□□ -0.01
COL28A1-206ENST00000465339 CCT2P78371 535 aaKnown RBP14.96□□□□□ -0.01
COL28A1-206ENST00000465339 LAMC2Q13753 1193 aa14.96□□□□□ -0.01
COL28A1-206ENST00000465339 DNAH12Q6ZR08 3092 aa14.96□□□□□ -0.01
COL28A1-206ENST00000465339 IL31RAQ8NI17 732 aa14.96□□□□□ -0.01
COL28A1-206ENST00000465339 CCDC12Q8WUD4 166 aaPredicted RBP14.96□□□□□ -0.01
COL28A1-206ENST00000465339 COPS5Q92905 334 aa14.96□□□□□ -0.01
COL28A1-206ENST00000465339 EMID1Q96A84 441 aaPredicted RBP14.96□□□□□ -0.01
COL28A1-206ENST00000465339 EHMT1Q9H9B1 1298 aa14.96□□□□□ -0.01
COL28A1-206ENST00000465339 COLQQ9Y215 455 aaPredicted RBP14.96□□□□□ -0.01
COL28A1-206ENST00000465339 CPLX1O14810 134 aa14.95□□□□□ -0.02
COL28A1-206ENST00000465339 ICAM3P32942 547 aa14.95□□□□□ -0.02
COL28A1-206ENST00000465339 MRPS9P82933 396 aaKnown RBP14.95□□□□□ -0.02
COL28A1-206ENST00000465339 PURAQ00577 322 aaKnown RBP14.95□□□□□ -0.02
COL28A1-206ENST00000465339 ARHGAP1Q07960 439 aa14.95□□□□□ -0.02
COL28A1-206ENST00000465339 ITGA7Q13683 1181 aa14.95□□□□□ -0.02
COL28A1-206ENST00000465339 UBE2SQ16763 222 aa14.95□□□□□ -0.02
COL28A1-206ENST00000465339 C8orf34Q49A92 452 aa14.95□□□□□ -0.02
COL28A1-206ENST00000465339 MCTP2Q6DN12 878 aa14.95□□□□□ -0.02
COL28A1-206ENST00000465339 TYW1BQ6NUM6 668 aa14.95□□□□□ -0.02
COL28A1-206ENST00000465339 CPLX2Q6PUV4 134 aaKnown RBP14.95□□□□□ -0.02
COL28A1-206ENST00000465339 DHX37Q8IY37 1157 aaKnown RBP14.95□□□□□ -0.02
COL28A1-206ENST00000465339 TRIM22Q8IYM9 498 aa14.95□□□□□ -0.02
COL28A1-206ENST00000465339 SLC43A3Q8NBI5 491 aa14.95□□□□□ -0.02
COL28A1-206ENST00000465339 INPP4AQ96PE3 977 aaPredicted RBP14.95□□□□□ -0.02
COL28A1-206ENST00000465339 GDF15Q99988 308 aa14.95□□□□□ -0.02
COL28A1-206ENST00000465339 LBHD1Q9BQE6 289 aaPredicted RBP14.95□□□□□ -0.02
COL28A1-206ENST00000465339 MTG1Q9BT17 334 aaPredicted RBP14.95□□□□□ -0.02
COL28A1-206ENST00000465339 NCOA5Q9HCD5 579 aaKnown RBP14.95□□□□□ -0.02
COL28A1-206ENST00000465339 PCDHA6Q9UN73 950 aa14.95□□□□□ -0.02
COL28A1-206ENST00000465339 PCDHA8Q9Y5H6 950 aa14.95□□□□□ -0.02
COL28A1-206ENST00000465339 ESYT2A0FGR8 921 aa14.94□□□□□ -0.02
COL28A1-206ENST00000465339 SPATA31C2B4DYI2 1134 aa14.94□□□□□ -0.02
COL28A1-206ENST00000465339 PQBP1O60828 265 aaKnown RBP14.94□□□□□ -0.02
COL28A1-206ENST00000465339 MYL3P08590 195 aa14.94□□□□□ -0.02
COL28A1-206ENST00000465339 CLTBP09497 229 aa14.94□□□□□ -0.02
COL28A1-206ENST00000465339 BMP8BP34820 402 aa14.94□□□□□ -0.02
COL28A1-206ENST00000465339 SSRP1Q08945 709 aaKnown RBP14.94□□□□□ -0.02
COL28A1-206ENST00000465339 PKN1Q16512 942 aa14.94□□□□□ -0.02
COL28A1-206ENST00000465339 MYSM1Q5VVJ2 828 aa14.94□□□□□ -0.02
COL28A1-206ENST00000465339 NLRX1Q86UT6 975 aa14.94□□□□□ -0.02
COL28A1-206ENST00000465339 AFG1LQ8WV93 481 aa14.94□□□□□ -0.02
COL28A1-206ENST00000465339 PHKBQ93100 1093 aa14.94□□□□□ -0.02
COL28A1-206ENST00000465339 LARP6Q9BRS8 491 aaKnown RBP14.94□□□□□ -0.02
COL28A1-206ENST00000465339 SLC26A6Q9BXS9 759 aa14.94□□□□□ -0.02
COL28A1-206ENST00000465339 PRO3102Q9H379 93 aa14.94□□□□□ -0.02
COL28A1-206ENST00000465339 PDLIM7Q9NR12 457 aa14.94□□□□□ -0.02
COL28A1-206ENST00000465339 RTEL1Q9NZ71 1219 aa14.94□□□□□ -0.02
COL28A1-206ENST00000465339 KIAA0355O15063 1070 aa14.93□□□□□ -0.02
COL28A1-206ENST00000465339 TLR3O15455 904 aaKnown RBP14.93□□□□□ -0.02
COL28A1-206ENST00000465339 MAFGO15525 162 aa14.93□□□□□ -0.02
COL28A1-206ENST00000465339 FIBPO43427 364 aa14.93□□□□□ -0.02
COL28A1-206ENST00000465339 MMP3P08254 477 aa14.93□□□□□ -0.02
COL28A1-206ENST00000465339 GNA11P29992 359 aa14.93□□□□□ -0.02
COL28A1-206ENST00000465339 NEK4P51957 841 aa14.93□□□□□ -0.02
COL28A1-206ENST00000465339 FAAP100Q0VG06 881 aa14.93□□□□□ -0.02
COL28A1-206ENST00000465339 AP3B2Q13367 1082 aa14.93□□□□□ -0.02
COL28A1-206ENST00000465339 DGKDQ16760 1214 aa14.93□□□□□ -0.02
COL28A1-206ENST00000465339 CELF3Q5SZQ8 465 aaKnown RBP14.93□□□□□ -0.02
COL28A1-206ENST00000465339 PPTC7Q8NI37 304 aa14.93□□□□□ -0.02
COL28A1-206ENST00000465339 ZFP91Q96JP5 570 aaPredicted RBP14.93□□□□□ -0.02
COL28A1-206ENST00000465339 ZMYND12Q9H0C1 365 aa14.93□□□□□ -0.02
COL28A1-206ENST00000465339 SLKQ9H2G2 1235 aaPredicted RBP14.93□□□□□ -0.02
COL28A1-206ENST00000465339 C6orf50Q9HD87 102 aa14.93□□□□□ -0.02
COL28A1-206ENST00000465339 PRDM5Q9NQX1 630 aaPredicted RBP14.93□□□□□ -0.02
COL28A1-206ENST00000465339 SH3GLB2Q9NR46 395 aa14.93□□□□□ -0.02
COL28A1-206ENST00000465339 TMEM39AQ9NV64 488 aa14.93□□□□□ -0.02
COL28A1-206ENST00000465339 A0A1W2PPC1 479 aa14.92□□□□□ -0.02
COL28A1-206ENST00000465339 PFKFB2O60825 505 aa14.92□□□□□ -0.02
COL28A1-206ENST00000465339 PPFIA4O75335 1185 aa14.92□□□□□ -0.02
COL28A1-206ENST00000465339 CDKL5O76039 1030 aa14.92□□□□□ -0.02
COL28A1-206ENST00000465339 GGPS1O95749 300 aa14.92□□□□□ -0.02
COL28A1-206ENST00000465339 MAGEA10P43363 369 aaPredicted RBP14.92□□□□□ -0.02
COL28A1-206ENST00000465339 AK2P54819 239 aa14.92□□□□□ -0.02
COL28A1-206ENST00000465339 SP2Q02086 613 aa14.92□□□□□ -0.02
COL28A1-206ENST00000465339 STK3Q13188 491 aa14.92□□□□□ -0.02
COL28A1-206ENST00000465339 NEDD9Q14511 834 aa14.92□□□□□ -0.02
COL28A1-206ENST00000465339 HABP4Q5JVS0 413 aaKnown RBP14.92□□□□□ -0.02
COL28A1-206ENST00000465339 GIMAP8Q8ND71 665 aaPredicted RBP14.92□□□□□ -0.02
COL28A1-206ENST00000465339 CCDC148Q8NFR7 591 aa14.92□□□□□ -0.02
COL28A1-206ENST00000465339 GPRASP2Q96D09 838 aa14.92□□□□□ -0.02
COL28A1-206ENST00000465339 CDHR1Q96JP9 859 aa14.92□□□□□ -0.02
COL28A1-206ENST00000465339 SENP7Q9BQF6 1050 aa14.92□□□□□ -0.02
COL28A1-206ENST00000465339 MLXIPQ9HAP2 919 aa14.92□□□□□ -0.02
COL28A1-206ENST00000465339 TPCN1Q9ULQ1 816 aa14.92□□□□□ -0.02
COL28A1-206ENST00000465339 SCN10AQ9Y5Y9 1956 aa14.92□□□□□ -0.02
COL28A1-206ENST00000465339 GRIN2DO15399 1336 aa14.92□□□□□ -0.02
COL28A1-206ENST00000465339 TRIM43BA6NCK2 446 aa14.91□□□□□ -0.02
Retrieved 100 of 20,778 RNA–protein pairs in 28.4 ms