RNA–Protein interactions for RNA: ENST00000460333.5

VPS13D-202, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 2

Gene VPS13D, Length 4,910 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-202ENST00000460333 C11orf57Q6ZUT1 292 aaPredicted RBP6.79□□□□□ -1.32
VPS13D-202ENST00000460333 C16orf86Q6ZW13 317 aa6.79□□□□□ -1.32
VPS13D-202ENST00000460333 PCDHA4Q9UN74 947 aa6.79□□□□□ -1.32
VPS13D-202ENST00000460333 FLT1P17948 1338 aa6.79□□□□□ -1.32
VPS13D-202ENST00000460333 LAD1O00515 517 aa6.79□□□□□ -1.32
VPS13D-202ENST00000460333 PPP1R12AO14974 1030 aaPredicted RBP6.79□□□□□ -1.32
VPS13D-202ENST00000460333 TADA3O75528 432 aa6.79□□□□□ -1.32
VPS13D-202ENST00000460333 RPSAP08865 295 aaKnown RBP6.79□□□□□ -1.32
VPS13D-202ENST00000460333 MCM7P33993 719 aa6.79□□□□□ -1.32
VPS13D-202ENST00000460333 ATP1A2P50993 1020 aa6.79□□□□□ -1.32
VPS13D-202ENST00000460333 FKBP1AP62942 108 aaKnown RBP6.79□□□□□ -1.32
VPS13D-202ENST00000460333 PFKFB3Q16875 520 aaPredicted RBP6.79□□□□□ -1.32
VPS13D-202ENST00000460333 CERKLQ49MI3 558 aaPredicted RBP6.79□□□□□ -1.32
VPS13D-202ENST00000460333 CCDC170Q8IYT3 715 aa6.79□□□□□ -1.32
VPS13D-202ENST00000460333 SLC35F6Q8N357 371 aa6.79□□□□□ -1.32
VPS13D-202ENST00000460333 AKT1S1Q96B36 256 aa6.79□□□□□ -1.32
VPS13D-202ENST00000460333 PGBD1Q96JS3 809 aa6.79□□□□□ -1.32
VPS13D-202ENST00000460333 VPS16Q9H269 839 aa6.79□□□□□ -1.32
VPS13D-202ENST00000460333 DDX52Q9Y2R4 599 aaKnown RBP eCLIP6.79□□□□□ -1.32
VPS13D-202ENST00000460333 THSD7AQ9UPZ6 1657 aa6.79□□□□□ -1.32
VPS13D-202ENST00000460333 CASQ2O14958 399 aaPredicted RBP6.79□□□□□ -1.32
VPS13D-202ENST00000460333 DNAJC8O75937 253 aaPredicted RBP6.79□□□□□ -1.32
VPS13D-202ENST00000460333 MAGEA1P43355 309 aa6.79□□□□□ -1.32
VPS13D-202ENST00000460333 ADCY7P51828 1080 aa6.79□□□□□ -1.32
VPS13D-202ENST00000460333 SEC23AQ15436 765 aa6.79□□□□□ -1.32
VPS13D-202ENST00000460333 SEL1L2Q5TEA6 688 aa6.79□□□□□ -1.32
VPS13D-202ENST00000460333 SPATA1Q5VX52 437 aa6.79□□□□□ -1.32
VPS13D-202ENST00000460333 ZNF579Q8NAF0 562 aaKnown RBP6.79□□□□□ -1.32
VPS13D-202ENST00000460333 PPP1R14CQ8TAE6 165 aa6.79□□□□□ -1.32
VPS13D-202ENST00000460333 AIFM3Q96NN9 605 aa6.79□□□□□ -1.32
VPS13D-202ENST00000460333 DESI2Q9BSY9 194 aa6.79□□□□□ -1.32
VPS13D-202ENST00000460333 NOC4LQ9BVI4 516 aaKnown RBP6.79□□□□□ -1.32
VPS13D-202ENST00000460333 RTFDC1Q9BY42 306 aaPredicted RBP6.79□□□□□ -1.32
VPS13D-202ENST00000460333 KANSL2Q9H9L4 492 aa6.79□□□□□ -1.32
VPS13D-202ENST00000460333 CSADQ9Y600 493 aa6.79□□□□□ -1.32
VPS13D-202ENST00000460333 FRMD3A2A2Y4 597 aa6.79□□□□□ -1.32
VPS13D-202ENST00000460333 IQCA1LA6NCM1 817 aa6.79□□□□□ -1.32
VPS13D-202ENST00000460333 CCDC169A6NNP5 214 aa6.79□□□□□ -1.32
VPS13D-202ENST00000460333 RGS16O15492 202 aaPredicted RBP6.79□□□□□ -1.32
VPS13D-202ENST00000460333 SMARCA1P28370 1054 aa6.79□□□□□ -1.32
VPS13D-202ENST00000460333 ZNF76P36508 570 aa6.79□□□□□ -1.32
VPS13D-202ENST00000460333 ASIC1P78348 528 aa6.79□□□□□ -1.32
VPS13D-202ENST00000460333 E2F5Q15329 346 aa6.79□□□□□ -1.32
VPS13D-202ENST00000460333 ZNF827Q17R98 1081 aa6.79□□□□□ -1.32
VPS13D-202ENST00000460333 SLC9C1Q4G0N8 1177 aa6.79□□□□□ -1.32
VPS13D-202ENST00000460333 MAP3K21Q5TCX8 1036 aa6.79□□□□□ -1.32
VPS13D-202ENST00000460333 CCDC84Q86UT8 332 aaPredicted RBP6.79□□□□□ -1.32
VPS13D-202ENST00000460333 WHAMMQ8TF30 809 aa6.79□□□□□ -1.32
VPS13D-202ENST00000460333 ARHGEF2Q92974 986 aaKnown RBP6.79□□□□□ -1.32
VPS13D-202ENST00000460333 TMEM47Q9BQJ4 181 aa6.79□□□□□ -1.32
VPS13D-202ENST00000460333 NBPF3Q9H094 633 aa6.79□□□□□ -1.32
VPS13D-202ENST00000460333 Q9H521 79 aa6.79□□□□□ -1.32
VPS13D-202ENST00000460333 SAMM50Q9Y512 469 aa6.79□□□□□ -1.32
VPS13D-202ENST00000460333 TUBGCP6Q96RT7 1819 aa6.78□□□□□ -1.32
VPS13D-202ENST00000460333 FOXP2O15409 715 aa6.78□□□□□ -1.32
VPS13D-202ENST00000460333 SLC1A4P43007 532 aa6.78□□□□□ -1.32
VPS13D-202ENST00000460333 NDUFA8P51970 172 aa6.78□□□□□ -1.32
VPS13D-202ENST00000460333 RNASELQ05823 741 aaKnown RBP6.78□□□□□ -1.32
VPS13D-202ENST00000460333 TAF11Q15544 211 aa6.78□□□□□ -1.32
VPS13D-202ENST00000460333 RASIP1Q5U651 963 aa6.78□□□□□ -1.32
VPS13D-202ENST00000460333 TRIM68Q6AZZ1 485 aa6.78□□□□□ -1.32
VPS13D-202ENST00000460333 ARHGAP18Q8N392 663 aa6.78□□□□□ -1.32
VPS13D-202ENST00000460333 KCNF1Q9H3M0 494 aa6.78□□□□□ -1.32
VPS13D-202ENST00000460333 GPCPD1Q9NPB8 672 aa6.78□□□□□ -1.32
VPS13D-202ENST00000460333 IVNS1ABPQ9Y6Y0 642 aa6.78□□□□□ -1.32
VPS13D-202ENST00000460333 MYH14Q7Z406 1995 aaKnown RBP6.78□□□□□ -1.32
VPS13D-202ENST00000460333 LRP5O75197 1615 aa6.78□□□□□ -1.32
VPS13D-202ENST00000460333 CFAP73A6NFT4 308 aa6.78□□□□□ -1.32
VPS13D-202ENST00000460333 PLEKHA8P1O95397 391 aa6.78□□□□□ -1.32
VPS13D-202ENST00000460333 LMNAP02545 664 aaKnown RBP6.78□□□□□ -1.32
VPS13D-202ENST00000460333 FGRP09769 529 aa6.78□□□□□ -1.32
VPS13D-202ENST00000460333 TCP10Q12799 353 aa6.78□□□□□ -1.32
VPS13D-202ENST00000460333 RPS6KA1Q15418 735 aa6.78□□□□□ -1.32
VPS13D-202ENST00000460333 GLE1Q53GS7 698 aaKnown RBP6.78□□□□□ -1.32
VPS13D-202ENST00000460333 PARP9Q8IXQ6 854 aa6.78□□□□□ -1.32
VPS13D-202ENST00000460333 REXO1Q8N1G1 1221 aaKnown RBP6.78□□□□□ -1.32
VPS13D-202ENST00000460333 IFIH1Q9BYX4 1025 aaKnown RBP6.78□□□□□ -1.32
VPS13D-202ENST00000460333 EIF4ENIF1Q9NRA8 985 aaKnown RBP6.78□□□□□ -1.32
VPS13D-202ENST00000460333 BCAP29Q9UHQ4 241 aa6.78□□□□□ -1.32
VPS13D-202ENST00000460333 TPX2Q9ULW0 747 aaKnown RBP6.78□□□□□ -1.32
VPS13D-202ENST00000460333 SRPRBQ9Y5M8 271 aaKnown RBP6.78□□□□□ -1.32
VPS13D-202ENST00000460333 DUOX1Q9NRD9 1551 aa6.78□□□□□ -1.32
VPS13D-202ENST00000460333 KLRG2A4D1S0 409 aaPredicted RBP6.78□□□□□ -1.32
VPS13D-202ENST00000460333 VWA3AA6NCI4 1184 aa6.78□□□□□ -1.32
VPS13D-202ENST00000460333 SMCO2A6NFE2 343 aa6.78□□□□□ -1.32
VPS13D-202ENST00000460333 SMIM23A6NLE4 172 aa6.78□□□□□ -1.32
VPS13D-202ENST00000460333 SKIP12755 728 aa6.78□□□□□ -1.32
VPS13D-202ENST00000460333 ATP2A2P16615 1042 aaKnown RBP6.78□□□□□ -1.32
VPS13D-202ENST00000460333 NR1D1P20393 614 aa6.78□□□□□ -1.32
VPS13D-202ENST00000460333 SUGP1Q8IWZ8 645 aaKnown RBP6.78□□□□□ -1.32
VPS13D-202ENST00000460333 VPS52Q8N1B4 723 aa6.78□□□□□ -1.32
VPS13D-202ENST00000460333 CTTNBP2NLQ9P2B4 639 aa6.78□□□□□ -1.32
VPS13D-202ENST00000460333 EPN1Q9Y6I3 576 aaPredicted RBP6.78□□□□□ -1.32
VPS13D-202ENST00000460333 SCN7AQ01118 1682 aa6.78□□□□□ -1.32
VPS13D-202ENST00000460333 hCG_1642624A0A1W2PR95 340 aa6.77□□□□□ -1.32
VPS13D-202ENST00000460333 SOCS7O14512 581 aa6.77□□□□□ -1.32
VPS13D-202ENST00000460333 POLR2DO15514 142 aaKnown RBP6.77□□□□□ -1.32
VPS13D-202ENST00000460333 LONP1P36776 959 aaKnown RBP6.77□□□□□ -1.32
VPS13D-202ENST00000460333 TROAPQ12815 778 aa6.77□□□□□ -1.32
VPS13D-202ENST00000460333 NNTQ13423 1086 aa6.77□□□□□ -1.32
Retrieved 100 of 20,778 RNA–protein pairs in 63.6 ms