RNA–Protein interactions for RNA: ENST00000450251.5

USP53-202, Transcript of ubiquitin specific peptidase 53, humanhuman

APPRIS P1 TSL 5 BASIC

Gene USP53, Length 6,072 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-202ENST00000450251 ASPHQ12797 758 aa2.39□□□□□ -2.03
USP53-202ENST00000450251 PDCLQ13371 301 aa2.39□□□□□ -2.03
USP53-202ENST00000450251 POSTNQ15063 836 aa2.39□□□□□ -2.03
USP53-202ENST00000450251 ASIC2Q16515 512 aa2.39□□□□□ -2.03
USP53-202ENST00000450251 SLC5A9Q2M3M2 681 aa2.39□□□□□ -2.03
USP53-202ENST00000450251 PPP4R4Q6NUP7 873 aa2.39□□□□□ -2.03
USP53-202ENST00000450251 B3GNT6Q6ZMB0 384 aa2.39□□□□□ -2.03
USP53-202ENST00000450251 TRPM8Q7Z2W7 1104 aa2.39□□□□□ -2.03
USP53-202ENST00000450251 AACSQ86V21 672 aa2.39□□□□□ -2.03
USP53-202ENST00000450251 SKAP1Q86WV1 359 aa2.39□□□□□ -2.03
USP53-202ENST00000450251 LRRC43Q8N309 656 aa2.39□□□□□ -2.03
USP53-202ENST00000450251 C1orf131Q8NDD1 294 aaKnown RBP2.39□□□□□ -2.03
USP53-202ENST00000450251 RFWD2Q8NHY2 731 aa2.39□□□□□ -2.03
USP53-202ENST00000450251 ACMSDQ8TDX5 336 aa2.39□□□□□ -2.03
USP53-202ENST00000450251 HDAC7Q8WUI4 952 aa2.39□□□□□ -2.03
USP53-202ENST00000450251 TSR2Q969E8 191 aaKnown RBP2.39□□□□□ -2.03
USP53-202ENST00000450251 CENPTQ96BT3 561 aa2.39□□□□□ -2.03
USP53-202ENST00000450251 SYTL4Q96C24 671 aaPredicted RBP2.39□□□□□ -2.03
USP53-202ENST00000450251 RMDN1Q96DB5 314 aa2.39□□□□□ -2.03
USP53-202ENST00000450251 MS4A3Q96HJ5 214 aa2.39□□□□□ -2.03
USP53-202ENST00000450251 PAWRQ96IZ0 340 aaKnown RBP2.39□□□□□ -2.03
USP53-202ENST00000450251 RBM41Q96IZ5 413 aaKnown RBP2.39□□□□□ -2.03
USP53-202ENST00000450251 COQ7Q99807 217 aa2.39□□□□□ -2.03
USP53-202ENST00000450251 NDEL1Q9GZM8 345 aa2.39□□□□□ -2.03
USP53-202ENST00000450251 SLITRK6Q9H5Y7 841 aa2.39□□□□□ -2.03
USP53-202ENST00000450251 DCLRE1BQ9H816 532 aa2.39□□□□□ -2.03
USP53-202ENST00000450251 CNNM2Q9H8M5 875 aa2.39□□□□□ -2.03
USP53-202ENST00000450251 PLGRKTQ9HBL7 147 aa2.39□□□□□ -2.03
USP53-202ENST00000450251 RHBDL2Q9NX52 303 aa2.39□□□□□ -2.03
USP53-202ENST00000450251 SENP1Q9P0U3 644 aa2.39□□□□□ -2.03
USP53-202ENST00000450251 DDX25Q9UHL0 483 aaKnown RBP2.39□□□□□ -2.03
USP53-202ENST00000450251 RIMS2Q9UQ26 1411 aa2.39□□□□□ -2.03
USP53-202ENST00000450251 PLAAQ9Y263 795 aa2.39□□□□□ -2.03
USP53-202ENST00000450251 A0A1B0GVL5 298 aa2.39□□□□□ -2.03
USP53-202ENST00000450251 DAB1O75553 588 aa2.39□□□□□ -2.03
USP53-202ENST00000450251 MTRF1O75570 445 aaKnown RBP2.39□□□□□ -2.03
USP53-202ENST00000450251 HEXIM1O94992 359 aaKnown RBP2.39□□□□□ -2.03
USP53-202ENST00000450251 GGPS1O95749 300 aa2.39□□□□□ -2.03
USP53-202ENST00000450251 KRT10P13645 584 aa2.39□□□□□ -2.03
USP53-202ENST00000450251 TTKP33981 857 aa2.39□□□□□ -2.03
USP53-202ENST00000450251 SKIV2L2P42285 1042 aaKnown RBP2.39□□□□□ -2.03
USP53-202ENST00000450251 ATN1P54259 1190 aaPredicted RBP2.39□□□□□ -2.03
USP53-202ENST00000450251 PPP2R5BQ15173 497 aa2.39□□□□□ -2.03
USP53-202ENST00000450251 CEP78Q5JTW2 689 aa2.39□□□□□ -2.03
USP53-202ENST00000450251 TCHHL1Q5QJ38 904 aaPredicted RBP2.39□□□□□ -2.03
USP53-202ENST00000450251 BEND6Q5SZJ8 279 aaPredicted RBP2.39□□□□□ -2.03
USP53-202ENST00000450251 ZFYVE27Q5T4F4 411 aa2.39□□□□□ -2.03
USP53-202ENST00000450251 OLFML2BQ68BL8 750 aa2.39□□□□□ -2.03
USP53-202ENST00000450251 PPP1R2P3Q6NXS1 205 aa2.39□□□□□ -2.03
USP53-202ENST00000450251 PM20D2Q8IYS1 436 aa2.39□□□□□ -2.03
USP53-202ENST00000450251 RIBC1Q8N443 379 aaPredicted RBP2.39□□□□□ -2.03
USP53-202ENST00000450251 STX19Q8N4C7 294 aa2.39□□□□□ -2.03
USP53-202ENST00000450251 CCDC82Q8N4S0 544 aa2.39□□□□□ -2.03
USP53-202ENST00000450251 TSPYL6Q8N831 410 aa2.39□□□□□ -2.03
USP53-202ENST00000450251 NCOA7Q8NI08 942 aa2.39□□□□□ -2.03
USP53-202ENST00000450251 PPP4R1Q8TF05 950 aa2.39□□□□□ -2.03
USP53-202ENST00000450251 DIS3LQ8TF46 1054 aaKnown RBP2.39□□□□□ -2.03
USP53-202ENST00000450251 JADE3Q92613 823 aa2.39□□□□□ -2.03
USP53-202ENST00000450251 LRRC59Q96AG4 307 aaKnown RBP2.39□□□□□ -2.03
USP53-202ENST00000450251 CNBD2Q96M20 576 aa2.39□□□□□ -2.03
USP53-202ENST00000450251 LRGUKQ96M69 825 aa2.39□□□□□ -2.03
USP53-202ENST00000450251 PLEKHG4BQ96PX9 1271 aa2.39□□□□□ -2.03
USP53-202ENST00000450251 OLFM1Q99784 485 aa2.39□□□□□ -2.03
USP53-202ENST00000450251 MRPS26Q9BYN8 205 aaKnown RBP2.39□□□□□ -2.03
USP53-202ENST00000450251 SPC25Q9HBM1 224 aa2.39□□□□□ -2.03
USP53-202ENST00000450251 PIH1D3Q9NQM4 214 aaKnown RBP2.39□□□□□ -2.03
USP53-202ENST00000450251 RTEL1Q9NZ71 1219 aa2.39□□□□□ -2.03
USP53-202ENST00000450251 STK26Q9P289 416 aa2.39□□□□□ -2.03
USP53-202ENST00000450251 DNAJC12Q9UKB3 198 aa2.39□□□□□ -2.03
USP53-202ENST00000450251 APOBEC2Q9Y235 224 aaKnown RBP2.39□□□□□ -2.03
USP53-202ENST00000450251 CLEC11AQ9Y240 323 aa2.39□□□□□ -2.03
USP53-202ENST00000450251 USP15Q9Y4E8 981 aaPredicted RBP2.39□□□□□ -2.03
USP53-202ENST00000450251 SNX14Q9Y5W7 946 aa2.39□□□□□ -2.03
USP53-202ENST00000450251 PARP3Q9Y6F1 533 aa2.39□□□□□ -2.03
USP53-202ENST00000450251 RAPGEF6Q8TEU7 1601 aa2.39□□□□□ -2.03
USP53-202ENST00000450251 ABCC4O15439 1325 aa2.39□□□□□ -2.03
USP53-202ENST00000450251 PDS5AQ29RF7 1337 aaKnown RBP2.39□□□□□ -2.03
USP53-202ENST00000450251 FAM187AA6NFU0 413 aa2.39□□□□□ -2.03
USP53-202ENST00000450251 ARID3CA6NKF2 412 aa2.39□□□□□ -2.03
USP53-202ENST00000450251 EIF3DO15371 548 aaKnown RBP eCLIP2.39□□□□□ -2.03
USP53-202ENST00000450251 MFAP3LO75121 409 aa2.39□□□□□ -2.03
USP53-202ENST00000450251 ZNF202O95125 648 aa2.39□□□□□ -2.03
USP53-202ENST00000450251 FMNL1O95466 1100 aaPredicted RBP2.39□□□□□ -2.03
USP53-202ENST00000450251 CALM1P0DP23 149 aa2.39□□□□□ -2.03
USP53-202ENST00000450251 CALM2P0DP24 149 aa2.39□□□□□ -2.03
USP53-202ENST00000450251 CALM3P0DP25 149 aa2.39□□□□□ -2.03
USP53-202ENST00000450251 BCRP11274 1271 aa2.39□□□□□ -2.03
USP53-202ENST00000450251 KRT3P12035 628 aa2.39□□□□□ -2.03
USP53-202ENST00000450251 FOSL1P15407 271 aa2.39□□□□□ -2.03
USP53-202ENST00000450251 ANXA13P27216 316 aa2.39□□□□□ -2.03
USP53-202ENST00000450251 FLT3P36888 993 aa2.39□□□□□ -2.03
USP53-202ENST00000450251 GRIK3Q13003 919 aa2.39□□□□□ -2.03
USP53-202ENST00000450251 ITGB3BPQ13352 177 aaPredicted RBP2.39□□□□□ -2.03
USP53-202ENST00000450251 BYSLQ13895 437 aaKnown RBP2.39□□□□□ -2.03
USP53-202ENST00000450251 PTK2BQ14289 1009 aa2.39□□□□□ -2.03
USP53-202ENST00000450251 SGSM1Q2NKQ1 1148 aa2.39□□□□□ -2.03
USP53-202ENST00000450251 CEP55Q53EZ4 464 aa2.39□□□□□ -2.03
USP53-202ENST00000450251 LACTB2Q53H82 288 aaPredicted RBP2.39□□□□□ -2.03
USP53-202ENST00000450251 RBM20Q5T481 1227 aaKnown RBP2.39□□□□□ -2.03
USP53-202ENST00000450251 CNNM4Q6P4Q7 775 aa2.39□□□□□ -2.03
Retrieved 100 of 20,778 RNA–protein pairs in 23.6 ms