RNA–Protein interactions for RNA: ENST00000423636.6

PTPRN-204, Transcript of protein tyrosine phosphatase, receptor type N, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene PTPRN, Length 3,313 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRN-204ENST00000423636 CCNE1P24864 410 aa13.27□□□□□ -0.28
PTPRN-204ENST00000423636 ARHGAP4P98171 946 aa13.27□□□□□ -0.28
PTPRN-204ENST00000423636 TCERG1LQ5VWI1 586 aa13.27□□□□□ -0.28
PTPRN-204ENST00000423636 NOA1Q8NC60 698 aaKnown RBP13.27□□□□□ -0.28
PTPRN-204ENST00000423636 ZNF397Q8NF99 534 aaPredicted RBP13.27□□□□□ -0.28
PTPRN-204ENST00000423636 PARD6BQ9BYG5 372 aa13.27□□□□□ -0.28
PTPRN-204ENST00000423636 GOLPH3Q9H4A6 298 aa13.27□□□□□ -0.28
PTPRN-204ENST00000423636 EML1O00423 815 aa13.27□□□□□ -0.29
PTPRN-204ENST00000423636 MYO1BO43795 1136 aa13.27□□□□□ -0.29
PTPRN-204ENST00000423636 TADA3O75528 432 aa13.27□□□□□ -0.29
PTPRN-204ENST00000423636 COASYQ13057 564 aa13.27□□□□□ -0.29
PTPRN-204ENST00000423636 TDRD12Q587J7 1177 aaKnown RBP13.27□□□□□ -0.29
PTPRN-204ENST00000423636 MIIPQ5JXC2 388 aa13.27□□□□□ -0.29
PTPRN-204ENST00000423636 POTEAQ6S8J7 498 aa13.27□□□□□ -0.29
PTPRN-204ENST00000423636 HHIPL2Q6UWX4 724 aa13.27□□□□□ -0.29
PTPRN-204ENST00000423636 PANX2Q96RD6 677 aa13.27□□□□□ -0.29
PTPRN-204ENST00000423636 SPDYE3A6NKU9 549 aa13.26□□□□□ -0.29
PTPRN-204ENST00000423636 NCK2O43639 380 aa13.26□□□□□ -0.29
PTPRN-204ENST00000423636 ATP1A1P05023 1023 aaKnown RBP13.26□□□□□ -0.29
PTPRN-204ENST00000423636 PLA2G4BP0C869 781 aa13.26□□□□□ -0.29
PTPRN-204ENST00000423636 DPEP1P16444 411 aa13.26□□□□□ -0.29
PTPRN-204ENST00000423636 FBXO11Q86XK2 927 aa13.26□□□□□ -0.29
PTPRN-204ENST00000423636 RGS22Q8NE09 1264 aa13.26□□□□□ -0.29
PTPRN-204ENST00000423636 OR8K1Q8NGG5 319 aa13.26□□□□□ -0.29
PTPRN-204ENST00000423636 CCDC47Q96A33 483 aaKnown RBP13.26□□□□□ -0.29
PTPRN-204ENST00000423636 BHMT2Q9H2M3 363 aa13.26□□□□□ -0.29
PTPRN-204ENST00000423636 LY75O60449 1722 aa13.26□□□□□ -0.29
PTPRN-204ENST00000423636 SNHG28P0DPA3 235 aa13.26□□□□□ -0.29
PTPRN-204ENST00000423636 ARHGAP25P42331 645 aa13.26□□□□□ -0.29
PTPRN-204ENST00000423636 HERVK_113P62684 666 aa13.26□□□□□ -0.29
PTPRN-204ENST00000423636 DCAF17Q5H9S7 520 aaPredicted RBP13.26□□□□□ -0.29
PTPRN-204ENST00000423636 STRIP1Q5VSL9 837 aa13.26□□□□□ -0.29
PTPRN-204ENST00000423636 CYP26C1Q6V0L0 522 aa13.26□□□□□ -0.29
PTPRN-204ENST00000423636 CATSPER3Q86XQ3 398 aa13.26□□□□□ -0.29
PTPRN-204ENST00000423636 ELOA2Q8IYF1 753 aaPredicted RBP13.26□□□□□ -0.29
PTPRN-204ENST00000423636 DEF6Q9H4E7 631 aa13.26□□□□□ -0.29
PTPRN-204ENST00000423636 NHEJ1Q9H9Q4 299 aaPredicted RBP13.26□□□□□ -0.29
PTPRN-204ENST00000423636 MRFAP1Q9Y605 127 aa13.26□□□□□ -0.29
PTPRN-204ENST00000423636 BMP3P12645 472 aa13.26□□□□□ -0.29
PTPRN-204ENST00000423636 ZC2HC1CQ53FD0 456 aaPredicted RBP13.26□□□□□ -0.29
PTPRN-204ENST00000423636 GALNT17Q6IS24 598 aa13.26□□□□□ -0.29
PTPRN-204ENST00000423636 PRR12Q9ULL5 1215 aa13.26□□□□□ -0.29
PTPRN-204ENST00000423636 GFPT1Q06210 699 aaPredicted RBP13.25□□□□□ -0.29
PTPRN-204ENST00000423636 DLGAP5Q15398 846 aa13.25□□□□□ -0.29
PTPRN-204ENST00000423636 SLC15A2Q16348 729 aa13.25□□□□□ -0.29
PTPRN-204ENST00000423636 AGBL1Q96MI9 1066 aa13.25□□□□□ -0.29
PTPRN-204ENST00000423636 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP13.25□□□□□ -0.29
PTPRN-204ENST00000423636 JADE2Q9NQC1 790 aa13.25□□□□□ -0.29
PTPRN-204ENST00000423636 PACSIN2Q9UNF0 486 aaPredicted RBP13.25□□□□□ -0.29
PTPRN-204ENST00000423636 MYH7BA7E2Y1 1941 aa13.25□□□□□ -0.29
PTPRN-204ENST00000423636 SASH3O75995 380 aa13.25□□□□□ -0.29
PTPRN-204ENST00000423636 MYBP10242 640 aa13.25□□□□□ -0.29
PTPRN-204ENST00000423636 MAP3K9P80192 1104 aa13.25□□□□□ -0.29
PTPRN-204ENST00000423636 AMPD3Q01432 767 aa13.25□□□□□ -0.29
PTPRN-204ENST00000423636 CNNM4Q6P4Q7 775 aa13.25□□□□□ -0.29
PTPRN-204ENST00000423636 GJB7Q6PEY0 223 aa13.25□□□□□ -0.29
PTPRN-204ENST00000423636 ZNF507Q8TCN5 953 aa13.25□□□□□ -0.29
PTPRN-204ENST00000423636 FAM84AQ96KN4 292 aa13.25□□□□□ -0.29
PTPRN-204ENST00000423636 PNKPQ96T60 521 aa13.25□□□□□ -0.29
PTPRN-204ENST00000423636 FEZ1Q99689 392 aa13.25□□□□□ -0.29
PTPRN-204ENST00000423636 GJA3Q9Y6H8 435 aa13.25□□□□□ -0.29
PTPRN-204ENST00000423636 PHLPP2Q6ZVD8 1323 aa13.25□□□□□ -0.29
PTPRN-204ENST00000423636 LRRC53A6NM62 1247 aa13.24□□□□□ -0.29
PTPRN-204ENST00000423636 OPLAHO14841 1288 aa13.24□□□□□ -0.29
PTPRN-204ENST00000423636 ZNF263O14978 683 aa13.24□□□□□ -0.29
PTPRN-204ENST00000423636 GPATCH4Q5T3I0 446 aaKnown RBP13.24□□□□□ -0.29
PTPRN-204ENST00000423636 SYDE2Q5VT97 1194 aa13.24□□□□□ -0.29
PTPRN-204ENST00000423636 SAMD7Q7Z3H4 446 aa13.24□□□□□ -0.29
PTPRN-204ENST00000423636 C7orf25Q9BPX7 421 aa13.24□□□□□ -0.29
PTPRN-204ENST00000423636 NDST4Q9H3R1 872 aa13.24□□□□□ -0.29
PTPRN-204ENST00000423636 SWAP70Q9UH65 585 aa13.24□□□□□ -0.29
PTPRN-204ENST00000423636 MYH10P35580 1976 aa13.24□□□□□ -0.29
PTPRN-204ENST00000423636 ANKRD31Q8N7Z5 1873 aa13.24□□□□□ -0.29
PTPRN-204ENST00000423636 CTAGE9A4FU28 777 aa13.24□□□□□ -0.29
PTPRN-204ENST00000423636 KIF2AO00139 706 aaPredicted RBP13.24□□□□□ -0.29
PTPRN-204ENST00000423636 ECM2O94769 699 aaPredicted RBP13.24□□□□□ -0.29
PTPRN-204ENST00000423636 MOCS3O95396 460 aa13.24□□□□□ -0.29
PTPRN-204ENST00000423636 PRPHP41219 470 aa13.24□□□□□ -0.29
PTPRN-204ENST00000423636 CHMP4BP1P59074 171 aa13.24□□□□□ -0.29
PTPRN-204ENST00000423636 FAM26FQ5R3K3 315 aa13.24□□□□□ -0.29
PTPRN-204ENST00000423636 ZNF771Q7L3S4 317 aaPredicted RBP13.24□□□□□ -0.29
PTPRN-204ENST00000423636 CACNA2D4Q7Z3S7 1137 aa13.24□□□□□ -0.29
PTPRN-204ENST00000423636 PCDHB13Q9Y5F0 798 aa13.24□□□□□ -0.29
PTPRN-204ENST00000423636 EIF4A3P38919 411 aaKnown RBP13.24□□□□□ -0.29
PTPRN-204ENST00000423636 POLR2FP61218 127 aaKnown RBP13.24□□□□□ -0.29
PTPRN-204ENST00000423636 COG2Q14746 738 aa13.24□□□□□ -0.29
PTPRN-204ENST00000423636 ARSHQ5FYA8 562 aa13.24□□□□□ -0.29
PTPRN-204ENST00000423636 OGFOD1Q8N543 542 aa13.24□□□□□ -0.29
PTPRN-204ENST00000423636 AMNQ9BXJ7 453 aa13.24□□□□□ -0.29
PTPRN-204ENST00000423636 DDX41Q9UJV9 622 aaKnown RBP13.24□□□□□ -0.29
PTPRN-204ENST00000423636 LAMA3Q16787 3333 aa13.23□□□□□ -0.29
PTPRN-204ENST00000423636 LRRC10BA6NIK2 292 aa13.23□□□□□ -0.29
PTPRN-204ENST00000423636 TISP43B9A030 160 aa13.23□□□□□ -0.29
PTPRN-204ENST00000423636 CASP4P49662 377 aa13.23□□□□□ -0.29
PTPRN-204ENST00000423636 SPAG1Q07617 926 aa13.23□□□□□ -0.29
PTPRN-204ENST00000423636 SFR1Q86XK3 245 aa13.23□□□□□ -0.29
PTPRN-204ENST00000423636 BANK1Q8NDB2 785 aa13.23□□□□□ -0.29
PTPRN-204ENST00000423636 DNAJC19Q96DA6 116 aa13.23□□□□□ -0.29
PTPRN-204ENST00000423636 TRERF1Q96PN7 1200 aa13.23□□□□□ -0.29
PTPRN-204ENST00000423636 RUSC1Q9BVN2 902 aa13.23□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 52.2 ms