RNA–Protein interactions for RNA: ENST00000423463.6

VPS13A-208, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 2

Gene VPS13A, Length 2,702 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-208ENST00000423463 ADGRF1Q5T601 910 aa3.42□□□□□ -1.86
VPS13A-208ENST00000423463 ZNF648Q5T619 568 aaPredicted RBP3.42□□□□□ -1.86
VPS13A-208ENST00000423463 GTF2IRD2BQ6EKJ0 949 aa3.42□□□□□ -1.86
VPS13A-208ENST00000423463 EEPD1Q7L9B9 569 aa3.42□□□□□ -1.86
VPS13A-208ENST00000423463 GTF2IRD2Q86UP8 949 aa3.42□□□□□ -1.86
VPS13A-208ENST00000423463 CPNE8Q86YQ8 564 aa3.42□□□□□ -1.86
VPS13A-208ENST00000423463 NALCNQ8IZF0 1738 aa3.42□□□□□ -1.86
VPS13A-208ENST00000423463 NGDNQ8NEJ9 315 aaKnown RBP3.42□□□□□ -1.86
VPS13A-208ENST00000423463 DDX17Q92841 729 aaKnown RBP3.42□□□□□ -1.86
VPS13A-208ENST00000423463 SHISA4Q96DD7 197 aa3.42□□□□□ -1.86
VPS13A-208ENST00000423463 CCDC120Q96HB5 630 aa3.42□□□□□ -1.86
VPS13A-208ENST00000423463 RCC1LQ96I51 464 aaKnown RBP3.42□□□□□ -1.86
VPS13A-208ENST00000423463 APBA2Q99767 749 aa3.42□□□□□ -1.86
VPS13A-208ENST00000423463 DIS3Q9Y2L1 958 aaKnown RBP3.42□□□□□ -1.86
VPS13A-208ENST00000423463 EMC9Q9Y3B6 208 aa3.42□□□□□ -1.86
VPS13A-208ENST00000423463 BACE2Q9Y5Z0 518 aa3.42□□□□□ -1.86
VPS13A-208ENST00000423463 TAF6LQ9Y6J9 622 aa3.42□□□□□ -1.86
VPS13A-208ENST00000423463 SBNO2Q9Y2G9 1366 aa3.42□□□□□ -1.86
VPS13A-208ENST00000423463 ADGRB2O60241 1585 aa3.42□□□□□ -1.86
VPS13A-208ENST00000423463 C2orf71A6NGG8 1288 aa3.42□□□□□ -1.86
VPS13A-208ENST00000423463 NOP56O00567 594 aaKnown RBP3.42□□□□□ -1.86
VPS13A-208ENST00000423463 MSL3P1P0C860 447 aa3.42□□□□□ -1.86
VPS13A-208ENST00000423463 PRKCAP17252 672 aa3.42□□□□□ -1.86
VPS13A-208ENST00000423463 SEPHS1P49903 392 aa3.42□□□□□ -1.86
VPS13A-208ENST00000423463 SLCO6A1Q86UG4 719 aa3.42□□□□□ -1.86
VPS13A-208ENST00000423463 NUP43Q8NFH3 380 aa3.42□□□□□ -1.86
VPS13A-208ENST00000423463 PMFBP1Q8TBY8 1022 aa3.42□□□□□ -1.86
VPS13A-208ENST00000423463 NSUN3Q9H649 340 aaKnown RBP3.42□□□□□ -1.86
VPS13A-208ENST00000423463 CLEC1BQ9P126 229 aa3.42□□□□□ -1.86
VPS13A-208ENST00000423463 TRPM1Q7Z4N2 1603 aa3.41□□□□□ -1.86
VPS13A-208ENST00000423463 SPATA31A3Q5VYP0 1347 aa3.41□□□□□ -1.86
VPS13A-208ENST00000423463 TULP4Q9NRJ4 1543 aa3.41□□□□□ -1.86
VPS13A-208ENST00000423463 A0A087WZG4 1122 aa3.41□□□□□ -1.86
VPS13A-208ENST00000423463 ST20-MTHFSA0A0A6YYL1 179 aa3.41□□□□□ -1.86
VPS13A-208ENST00000423463 PAX4O43316 350 aa3.41□□□□□ -1.86
VPS13A-208ENST00000423463 CYP4F3Q08477 520 aa3.41□□□□□ -1.86
VPS13A-208ENST00000423463 NR0B2Q15466 257 aa3.41□□□□□ -1.86
VPS13A-208ENST00000423463 MBLAC2Q68D91 279 aa3.41□□□□□ -1.86
VPS13A-208ENST00000423463 SPATC1Q76KD6 591 aa3.41□□□□□ -1.86
VPS13A-208ENST00000423463 JAMLQ86YT9 394 aa3.41□□□□□ -1.86
VPS13A-208ENST00000423463 TRIM59Q8IWR1 403 aa3.41□□□□□ -1.86
VPS13A-208ENST00000423463 PTCHD1Q96NR3 888 aa3.41□□□□□ -1.86
VPS13A-208ENST00000423463 FBLN5Q9UBX5 448 aa3.41□□□□□ -1.86
VPS13A-208ENST00000423463 PFDN2Q9UHV9 154 aa3.41□□□□□ -1.86
VPS13A-208ENST00000423463 SBNO1A3KN83 1393 aa3.41□□□□□ -1.86
VPS13A-208ENST00000423463 PNPLA6Q8IY17 1366 aa3.41□□□□□ -1.86
VPS13A-208ENST00000423463 FMN2Q9NZ56 1722 aa3.41□□□□□ -1.86
VPS13A-208ENST00000423463 U2SURPO15042 1029 aaKnown RBP3.41□□□□□ -1.86
VPS13A-208ENST00000423463 THBDP07204 575 aa3.41□□□□□ -1.86
VPS13A-208ENST00000423463 KIR2DL1P43626 348 aaPredicted RBP3.41□□□□□ -1.86
VPS13A-208ENST00000423463 KIR2DL2P43627 348 aaPredicted RBP3.41□□□□□ -1.86
VPS13A-208ENST00000423463 NOP2P46087 812 aaKnown RBP3.41□□□□□ -1.86
VPS13A-208ENST00000423463 PPP2R2AP63151 447 aa3.41□□□□□ -1.86
VPS13A-208ENST00000423463 EEF1DP3Q658K8 133 aa3.41□□□□□ -1.86
VPS13A-208ENST00000423463 POMZP3Q6PJE2 187 aa3.41□□□□□ -1.86
VPS13A-208ENST00000423463 NLRX1Q86UT6 975 aa3.41□□□□□ -1.86
VPS13A-208ENST00000423463 SPPL2CQ8IUH8 684 aa3.41□□□□□ -1.86
VPS13A-208ENST00000423463 ARMC5Q96C12 935 aa3.41□□□□□ -1.86
VPS13A-208ENST00000423463 INTS4Q96HW7 963 aaKnown RBP3.41□□□□□ -1.86
VPS13A-208ENST00000423463 MRGPRX3Q96LB0 322 aa3.41□□□□□ -1.86
VPS13A-208ENST00000423463 TESK2Q96S53 571 aa3.41□□□□□ -1.86
VPS13A-208ENST00000423463 USP35Q9P2H5 1018 aa3.41□□□□□ -1.86
VPS13A-208ENST00000423463 TNFRSF10DQ9UBN6 386 aa3.41□□□□□ -1.86
VPS13A-208ENST00000423463 BRD4O60885 1362 aaPredicted RBP3.41□□□□□ -1.86
VPS13A-208ENST00000423463 ACEP12821 1306 aa3.4□□□□□ -1.86
VPS13A-208ENST00000423463 PHLPP1O60346 1717 aa3.4□□□□□ -1.86
VPS13A-208ENST00000423463 ARHGEF28Q8N1W1 1705 aaKnown RBP3.4□□□□□ -1.86
VPS13A-208ENST00000423463 NRDCO43847 1150 aa3.4□□□□□ -1.86
VPS13A-208ENST00000423463 PLS3P13797 630 aa3.4□□□□□ -1.86
VPS13A-208ENST00000423463 PDE6BP35913 854 aa3.4□□□□□ -1.86
VPS13A-208ENST00000423463 ECI1P42126 302 aa3.4□□□□□ -1.86
VPS13A-208ENST00000423463 TMF1P82094 1093 aa3.4□□□□□ -1.86
VPS13A-208ENST00000423463 GRB10Q13322 594 aa3.4□□□□□ -1.86
VPS13A-208ENST00000423463 YOD1Q5VVQ6 348 aaPredicted RBP3.4□□□□□ -1.86
VPS13A-208ENST00000423463 ZNF605Q86T29 641 aa3.4□□□□□ -1.86
VPS13A-208ENST00000423463 LILRA2Q8N149 483 aa3.4□□□□□ -1.86
VPS13A-208ENST00000423463 UBXN4Q92575 508 aa3.4□□□□□ -1.86
VPS13A-208ENST00000423463 COPS5Q92905 334 aa3.4□□□□□ -1.86
VPS13A-208ENST00000423463 RXFP1Q9HBX9 757 aa3.4□□□□□ -1.86
VPS13A-208ENST00000423463 BTG4Q9NY30 223 aa3.4□□□□□ -1.86
VPS13A-208ENST00000423463 GULP1Q9UBP9 304 aa3.4□□□□□ -1.86
VPS13A-208ENST00000423463 YBX2Q9Y2T7 364 aaKnown RBP3.4□□□□□ -1.86
VPS13A-208ENST00000423463 RWDD3Q9Y3V2 267 aa3.4□□□□□ -1.86
VPS13A-208ENST00000423463 POLR3AO14802 1390 aaPredicted RBP3.4□□□□□ -1.86
VPS13A-208ENST00000423463 DISP3Q9P2K9 1392 aa3.4□□□□□ -1.86
VPS13A-208ENST00000423463 COL16A1Q07092 1604 aaPredicted RBP3.4□□□□□ -1.87
VPS13A-208ENST00000423463 ATP7BP35670 1465 aa3.4□□□□□ -1.87
VPS13A-208ENST00000423463 PXDNQ92626 1479 aa3.4□□□□□ -1.87
VPS13A-208ENST00000423463 ARHGEF10O15013 1369 aa3.4□□□□□ -1.87
VPS13A-208ENST00000423463 USP47Q96K76 1375 aa3.4□□□□□ -1.87
VPS13A-208ENST00000423463 NAT2P11245 290 aa3.4□□□□□ -1.87
VPS13A-208ENST00000423463 ZNF143P52747 638 aaPredicted RBP3.4□□□□□ -1.87
VPS13A-208ENST00000423463 MEX3CQ5U5Q3 659 aaKnown RBP3.4□□□□□ -1.87
VPS13A-208ENST00000423463 RCSD1Q6JBY9 416 aa3.4□□□□□ -1.87
VPS13A-208ENST00000423463 CYP2R1Q6VVX0 501 aa3.4□□□□□ -1.87
VPS13A-208ENST00000423463 KSR1Q8IVT5 923 aa3.4□□□□□ -1.87
VPS13A-208ENST00000423463 NKX2-4Q9H2Z4 354 aa3.4□□□□□ -1.87
VPS13A-208ENST00000423463 TMEFF2Q9UIK5 374 aaPredicted RBP3.4□□□□□ -1.87
VPS13A-208ENST00000423463 NHSL1Q5SYE7 1610 aa3.4□□□□□ -1.87
VPS13A-208ENST00000423463 NPHP3-ACAD11A0A0J9YXS1 232 aa3.39□□□□□ -1.87
Retrieved 100 of 20,778 RNA–protein pairs in 15.1 ms