RNA–Protein interactions for RNA: ENST00000413716.6

CCDC88A-204, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best) BASIC

Gene CCDC88A, Length 9,586 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-204ENST00000413716 POGZQ7Z3K3 1410 aa14.36□□□□□ -0.11
CCDC88A-204ENST00000413716 GRK2P25098 689 aa14.35□□□□□ -0.11
CCDC88A-204ENST00000413716 MAGEA9P43362 315 aa14.35□□□□□ -0.11
CCDC88A-204ENST00000413716 HIBCHQ6NVY1 386 aaPredicted RBP14.35□□□□□ -0.11
CCDC88A-204ENST00000413716 MAGOHBQ96A72 148 aaKnown RBP14.35□□□□□ -0.11
CCDC88A-204ENST00000413716 PKD2L2Q9NZM6 624 aa14.35□□□□□ -0.11
CCDC88A-204ENST00000413716 ARMCX3Q9UH62 379 aaPredicted RBP14.35□□□□□ -0.11
CCDC88A-204ENST00000413716 K7ENM7 598 aa14.35□□□□□ -0.11
CCDC88A-204ENST00000413716 RUNX1T1Q06455 604 aa14.35□□□□□ -0.11
CCDC88A-204ENST00000413716 XPO4Q9C0E2 1151 aaKnown RBP14.35□□□□□ -0.11
CCDC88A-204ENST00000413716 CHPF2Q9P2E5 772 aa14.35□□□□□ -0.11
CCDC88A-204ENST00000413716 SEL1LQ9UBV2 794 aa14.35□□□□□ -0.11
CCDC88A-204ENST00000413716 RASSF9O75901 435 aa14.35□□□□□ -0.11
CCDC88A-204ENST00000413716 WASHC5Q12768 1159 aa14.35□□□□□ -0.11
CCDC88A-204ENST00000413716 PDCLQ13371 301 aa14.35□□□□□ -0.11
CCDC88A-204ENST00000413716 GPBP1Q86WP2 473 aa14.35□□□□□ -0.11
CCDC88A-204ENST00000413716 NSMCE4AQ9NXX6 385 aa14.35□□□□□ -0.11
CCDC88A-204ENST00000413716 CCDC151A5D8V7 595 aa14.35□□□□□ -0.11
CCDC88A-204ENST00000413716 PNOCQ13519 176 aa14.35□□□□□ -0.11
CCDC88A-204ENST00000413716 RSRC2Q7L4I2 434 aaKnown RBP14.35□□□□□ -0.11
CCDC88A-204ENST00000413716 ZC3H12CQ9C0D7 883 aaKnown RBP14.35□□□□□ -0.11
CCDC88A-204ENST00000413716 IL16Q14005 1332 aa14.35□□□□□ -0.11
CCDC88A-204ENST00000413716 EYA3Q99504 573 aa14.35□□□□□ -0.11
CCDC88A-204ENST00000413716 SAP30BPQ9UHR5 308 aaKnown RBP14.35□□□□□ -0.11
CCDC88A-204ENST00000413716 CCDC61Q9Y6R9 512 aa14.35□□□□□ -0.11
CCDC88A-204ENST00000413716 DLATP10515 647 aaKnown RBP14.35□□□□□ -0.11
CCDC88A-204ENST00000413716 ADCY1Q08828 1119 aa14.35□□□□□ -0.11
CCDC88A-204ENST00000413716 EFTUD2Q15029 972 aaKnown RBP eCLIP14.35□□□□□ -0.118e-7■■■■□ 19.8
CCDC88A-204ENST00000413716 CDR2LQ86X02 465 aaPredicted RBP14.35□□□□□ -0.11
CCDC88A-204ENST00000413716 TDRD7Q8NHU6 1098 aaKnown RBP14.35□□□□□ -0.11
CCDC88A-204ENST00000413716 SLC52A1Q9NWF4 448 aa14.35□□□□□ -0.11
CCDC88A-204ENST00000413716 PSMA4P25789 261 aaKnown RBP14.35□□□□□ -0.11
CCDC88A-204ENST00000413716 IRX1P78414 480 aaPredicted RBP14.35□□□□□ -0.11
CCDC88A-204ENST00000413716 TFAP4Q01664 338 aa14.35□□□□□ -0.11
CCDC88A-204ENST00000413716 RCSD1Q6JBY9 416 aa14.35□□□□□ -0.11
CCDC88A-204ENST00000413716 DARS2Q6PI48 645 aaKnown RBP14.35□□□□□ -0.11
CCDC88A-204ENST00000413716 CCDC103Q8IW40 242 aa14.35□□□□□ -0.11
CCDC88A-204ENST00000413716 MTRQ99707 1265 aa14.35□□□□□ -0.11
CCDC88A-204ENST00000413716 EXOC4Q96A65 974 aa14.35□□□□□ -0.11
CCDC88A-204ENST00000413716 FAM170AA1A519 330 aa14.34□□□□□ -0.11
CCDC88A-204ENST00000413716 WDR91A4D1P6 747 aa14.34□□□□□ -0.11
CCDC88A-204ENST00000413716 TBC1D4O60343 1298 aa14.34□□□□□ -0.11
CCDC88A-204ENST00000413716 IGBP1P78318 339 aa14.34□□□□□ -0.11
CCDC88A-204ENST00000413716 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP14.34□□□□□ -0.11
CCDC88A-204ENST00000413716 KIF2CQ99661 725 aa14.34□□□□□ -0.11
CCDC88A-204ENST00000413716 OSBPL1AQ9BXW6 950 aa14.34□□□□□ -0.11
CCDC88A-204ENST00000413716 MYOCDQ8IZQ8 938 aa14.34□□□□□ -0.11
CCDC88A-204ENST00000413716 CCNYQ8ND76 341 aa14.34□□□□□ -0.11
CCDC88A-204ENST00000413716 THAP11Q96EK4 314 aa14.34□□□□□ -0.11
CCDC88A-204ENST00000413716 H0Y3Z8 333 aa14.34□□□□□ -0.11
CCDC88A-204ENST00000413716 ICE2Q659A1 982 aa14.34□□□□□ -0.11
CCDC88A-204ENST00000413716 RRM2BQ7LG56 351 aa14.34□□□□□ -0.11
CCDC88A-204ENST00000413716 SLFN12Q8IYM2 578 aa14.34□□□□□ -0.11
CCDC88A-204ENST00000413716 HAUS4Q9H6D7 363 aa14.34□□□□□ -0.11
CCDC88A-204ENST00000413716 MYO1FO00160 1098 aa14.34□□□□□ -0.11
CCDC88A-204ENST00000413716 KRT27Q7Z3Y8 459 aa14.34□□□□□ -0.11
CCDC88A-204ENST00000413716 STAMBPL1Q96FJ0 436 aa14.34□□□□□ -0.11
CCDC88A-204ENST00000413716 SIKE1Q9BRV8 207 aa14.34□□□□□ -0.11
CCDC88A-204ENST00000413716 A0A0G2JND7 137 aa14.34□□□□□ -0.11
CCDC88A-204ENST00000413716 CUL1Q13616 776 aa14.34□□□□□ -0.11
CCDC88A-204ENST00000413716 SPARCL1Q14515 664 aa14.34□□□□□ -0.11
CCDC88A-204ENST00000413716 KRT72Q14CN4 511 aa14.34□□□□□ -0.11
CCDC88A-204ENST00000413716 BRIP1Q9BX63 1249 aa14.34□□□□□ -0.11
CCDC88A-204ENST00000413716 ADA2Q9NZK5 511 aa14.34□□□□□ -0.11
CCDC88A-204ENST00000413716 KAT6AQ92794 2004 aa14.34□□□□□ -0.11
CCDC88A-204ENST00000413716 PGRMC1O00264 195 aaKnown RBP14.34□□□□□ -0.11
CCDC88A-204ENST00000413716 TRIP4Q15650 581 aaPredicted RBP14.34□□□□□ -0.11
CCDC88A-204ENST00000413716 ALKBH8Q96BT7 664 aaKnown RBP14.34□□□□□ -0.11
CCDC88A-204ENST00000413716 PCDHB4Q9Y5E5 795 aa14.34□□□□□ -0.11
CCDC88A-204ENST00000413716 NBPF26B4DH59 902 aa14.34□□□□□ -0.11
CCDC88A-204ENST00000413716 TLR3O15455 904 aaKnown RBP14.34□□□□□ -0.11
CCDC88A-204ENST00000413716 ATP2B4P23634 1241 aa14.34□□□□□ -0.11
CCDC88A-204ENST00000413716 TMOD1P28289 359 aa14.34□□□□□ -0.11
CCDC88A-204ENST00000413716 KRR1Q13601 381 aaKnown RBP14.34□□□□□ -0.11
CCDC88A-204ENST00000413716 NLRX1Q86UT6 975 aa14.34□□□□□ -0.11
CCDC88A-204ENST00000413716 NBPF15Q8N660 670 aa14.34□□□□□ -0.11
CCDC88A-204ENST00000413716 GLG1Q92896 1179 aa14.34□□□□□ -0.11
CCDC88A-204ENST00000413716 VPS39Q96JC1 886 aa14.34□□□□□ -0.11
CCDC88A-204ENST00000413716 BRD1O95696 1058 aa14.33□□□□□ -0.11
CCDC88A-204ENST00000413716 SLC1A4P43007 532 aa14.33□□□□□ -0.11
CCDC88A-204ENST00000413716 GPBP1L1Q9HC44 474 aaPredicted RBP14.33□□□□□ -0.11
CCDC88A-204ENST00000413716 PPP2R5BQ15173 497 aa14.33□□□□□ -0.11
CCDC88A-204ENST00000413716 KRT39Q6A163 491 aa14.33□□□□□ -0.11
CCDC88A-204ENST00000413716 ZMYND12Q9H0C1 365 aa14.33□□□□□ -0.11
CCDC88A-204ENST00000413716 PANK4Q9NVE7 773 aa14.33□□□□□ -0.11
CCDC88A-204ENST00000413716 MAGED2Q9UNF1 606 aaPredicted RBP14.33□□□□□ -0.11
CCDC88A-204ENST00000413716 GUCA1CO95843 209 aa14.33□□□□□ -0.12
CCDC88A-204ENST00000413716 KRT17Q04695 432 aa14.33□□□□□ -0.12
CCDC88A-204ENST00000413716 NNTQ13423 1086 aa14.33□□□□□ -0.12
CCDC88A-204ENST00000413716 CABP7Q86V35 215 aa14.33□□□□□ -0.12
CCDC88A-204ENST00000413716 VCPP55072 806 aaKnown RBP14.33□□□□□ -0.12
CCDC88A-204ENST00000413716 TRIM69Q86WT6 500 aa14.33□□□□□ -0.12
CCDC88A-204ENST00000413716 NDUFAF2Q8N183 169 aa14.33□□□□□ -0.12
CCDC88A-204ENST00000413716 PPM1KQ8N3J5 372 aa14.33□□□□□ -0.12
CCDC88A-204ENST00000413716 PARP3Q9Y6F1 533 aa14.33□□□□□ -0.12
CCDC88A-204ENST00000413716 ASAP2O43150 1006 aa14.33□□□□□ -0.12
CCDC88A-204ENST00000413716 AOC3Q16853 763 aa14.33□□□□□ -0.12
CCDC88A-204ENST00000413716 BRD8Q9H0E9 1235 aa14.33□□□□□ -0.12
CCDC88A-204ENST00000413716 PPARGC1AQ9UBK2 798 aaKnown RBP14.33□□□□□ -0.12
CCDC88A-204ENST00000413716 C10orf76Q5T2E6 689 aa14.33□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 73.4 ms