RNA–Protein interactions for RNA: ENST00000406019.1

HMGB1P13-201, Transcript of high mobility group box 1 pseudogene 13, humanhuman

BASIC

Gene HMGB1P13, Length 642 nt, Biotype processed pseudogene.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P13-201ENST00000406019 PFDN2Q9UHV9 154 aa6.95□□□□□ -1.3
HMGB1P13-201ENST00000406019 ASXL2Q76L83 1435 aa6.94□□□□□ -1.3
HMGB1P13-201ENST00000406019 H7BY64 318 aa6.94□□□□□ -1.3
HMGB1P13-201ENST00000406019 BUB1BO60566 1050 aaPredicted RBP6.94□□□□□ -1.3
HMGB1P13-201ENST00000406019 PLA2G1BP04054 148 aaKnown RBP6.94□□□□□ -1.3
HMGB1P13-201ENST00000406019 VIL1P09327 827 aaKnown RBP6.94□□□□□ -1.3
HMGB1P13-201ENST00000406019 MC3RP41968 323 aa6.94□□□□□ -1.3
HMGB1P13-201ENST00000406019 MASP1P48740 699 aa6.94□□□□□ -1.3
HMGB1P13-201ENST00000406019 GTF2A2P52657 109 aa6.94□□□□□ -1.3
HMGB1P13-201ENST00000406019 CAP1Q01518 475 aa6.94□□□□□ -1.3
HMGB1P13-201ENST00000406019 SSRP1Q08945 709 aaKnown RBP6.94□□□□□ -1.3
HMGB1P13-201ENST00000406019 TCEA2Q15560 299 aa6.94□□□□□ -1.3
HMGB1P13-201ENST00000406019 EMC4Q5J8M3 183 aa6.94□□□□□ -1.3
HMGB1P13-201ENST00000406019 MROH9Q5TGP6 573 aa6.94□□□□□ -1.3
HMGB1P13-201ENST00000406019 STYK1Q6J9G0 422 aa6.94□□□□□ -1.3
HMGB1P13-201ENST00000406019 KCNT2Q6UVM3 1135 aa6.94□□□□□ -1.3
HMGB1P13-201ENST00000406019 NSMFQ6X4W1 530 aa6.94□□□□□ -1.3
HMGB1P13-201ENST00000406019 MIB1Q86YT6 1006 aa6.94□□□□□ -1.3
HMGB1P13-201ENST00000406019 DCP2Q8IU60 420 aaKnown RBP6.94□□□□□ -1.3
HMGB1P13-201ENST00000406019 SIAH1Q8IUQ4 282 aa6.94□□□□□ -1.3
HMGB1P13-201ENST00000406019 ZBTB38Q8NAP3 1195 aaPredicted RBP6.94□□□□□ -1.3
HMGB1P13-201ENST00000406019 EXOC2Q96KP1 924 aa6.94□□□□□ -1.3
HMGB1P13-201ENST00000406019 PHF20Q9BVI0 1012 aa6.94□□□□□ -1.3
HMGB1P13-201ENST00000406019 BTG4Q9NY30 223 aa6.94□□□□□ -1.3
HMGB1P13-201ENST00000406019 PPARGC1AQ9UBK2 798 aaKnown RBP6.94□□□□□ -1.3
HMGB1P13-201ENST00000406019 PCDHA2Q9Y5H9 948 aa6.94□□□□□ -1.3
HMGB1P13-201ENST00000406019 BLACEA4D250 179 aa6.93□□□□□ -1.3
HMGB1P13-201ENST00000406019 NUAK1O60285 661 aa6.93□□□□□ -1.3
HMGB1P13-201ENST00000406019 ZBTB7AO95365 584 aa6.93□□□□□ -1.3
HMGB1P13-201ENST00000406019 FAM153BP0C7A2 387 aa6.93□□□□□ -1.3
HMGB1P13-201ENST00000406019 DLX2Q07687 328 aaPredicted RBP6.93□□□□□ -1.3
HMGB1P13-201ENST00000406019 LSAMPQ13449 338 aa6.93□□□□□ -1.3
HMGB1P13-201ENST00000406019 LONRF2Q1L5Z9 754 aa6.93□□□□□ -1.3
HMGB1P13-201ENST00000406019 LCE4AQ5TA78 99 aa6.93□□□□□ -1.3
HMGB1P13-201ENST00000406019 CIAPIN1Q6FI81 312 aa6.93□□□□□ -1.3
HMGB1P13-201ENST00000406019 USP53Q70EK8 1073 aa6.93□□□□□ -1.3
HMGB1P13-201ENST00000406019 CEP68Q76N32 757 aa6.93□□□□□ -1.3
HMGB1P13-201ENST00000406019 B3GNT8Q7Z7M8 397 aa6.93□□□□□ -1.3
HMGB1P13-201ENST00000406019 IRF2BPLQ9H1B7 796 aa6.93□□□□□ -1.3
HMGB1P13-201ENST00000406019 NUDT5Q9UKK9 219 aa6.93□□□□□ -1.3
HMGB1P13-201ENST00000406019 KRTAP4-8A0A0G2JLE6 195 aa6.92□□□□□ -1.3
HMGB1P13-201ENST00000406019 MARCH6O60337 910 aa6.92□□□□□ -1.3
HMGB1P13-201ENST00000406019 TADA3O75528 432 aa6.92□□□□□ -1.3
HMGB1P13-201ENST00000406019 C8BP07358 591 aa6.92□□□□□ -1.3
HMGB1P13-201ENST00000406019 ZSCAN22P10073 491 aaPredicted RBP6.92□□□□□ -1.3
HMGB1P13-201ENST00000406019 LIMS1P48059 325 aa6.92□□□□□ -1.3
HMGB1P13-201ENST00000406019 TARBP2Q15633 366 aaKnown RBP6.92□□□□□ -1.3
HMGB1P13-201ENST00000406019 VWA3BQ502W6 1294 aa6.92□□□□□ -1.3
HMGB1P13-201ENST00000406019 ZNF385BQ569K4 471 aa6.92□□□□□ -1.3
HMGB1P13-201ENST00000406019 DALRD3Q5D0E6 543 aaKnown RBP6.92□□□□□ -1.3
HMGB1P13-201ENST00000406019 TAF7LQ5H9L4 462 aa6.92□□□□□ -1.3
HMGB1P13-201ENST00000406019 TP53I13Q8NBR0 393 aaPredicted RBP6.92□□□□□ -1.3
HMGB1P13-201ENST00000406019 ZSWIM2Q8NEG5 633 aa6.92□□□□□ -1.3
HMGB1P13-201ENST00000406019 ZSCAN18Q8TBC5 510 aaPredicted RBP6.92□□□□□ -1.3
HMGB1P13-201ENST00000406019 USP33Q8TEY7 942 aa6.92□□□□□ -1.3
HMGB1P13-201ENST00000406019 DCAF4Q8WV16 495 aa6.92□□□□□ -1.3
HMGB1P13-201ENST00000406019 SEC14L1Q92503 715 aa6.92□□□□□ -1.3
HMGB1P13-201ENST00000406019 ALG3Q92685 438 aa6.92□□□□□ -1.3
HMGB1P13-201ENST00000406019 KISS1RQ969F8 398 aaPredicted RBP6.92□□□□□ -1.3
HMGB1P13-201ENST00000406019 TMEM169Q96HH4 297 aa6.92□□□□□ -1.3
HMGB1P13-201ENST00000406019 MYO1BO43795 1136 aa6.91□□□□□ -1.3
HMGB1P13-201ENST00000406019 ASMTLO95671 621 aa6.91□□□□□ -1.3
HMGB1P13-201ENST00000406019 HABP4Q5JVS0 413 aaKnown RBP6.91□□□□□ -1.3
HMGB1P13-201ENST00000406019 FAM209AQ5JX71 171 aa6.91□□□□□ -1.3
HMGB1P13-201ENST00000406019 LBX2Q6XYB7 198 aa6.91□□□□□ -1.3
HMGB1P13-201ENST00000406019 PPIL4Q8WUA2 492 aaKnown RBP eCLIP6.91□□□□□ -1.3
HMGB1P13-201ENST00000406019 TRMT2BQ96GJ1 504 aaKnown RBP6.91□□□□□ -1.3
HMGB1P13-201ENST00000406019 ZFYVE21Q9BQ24 234 aa6.91□□□□□ -1.3
HMGB1P13-201ENST00000406019 DBR1Q9UK59 544 aaKnown RBP6.91□□□□□ -1.3
HMGB1P13-201ENST00000406019 PALD1Q9ULE6 856 aa6.91□□□□□ -1.3
HMGB1P13-201ENST00000406019 PLAAQ9Y263 795 aa6.91□□□□□ -1.3
HMGB1P13-201ENST00000406019 ZNF652Q9Y2D9 606 aa6.91□□□□□ -1.3
HMGB1P13-201ENST00000406019 BTBD11A6QL63 1104 aa6.9□□□□□ -1.3
HMGB1P13-201ENST00000406019 RFXAPO00287 272 aa6.9□□□□□ -1.3
HMGB1P13-201ENST00000406019 NCAM1P13591 858 aa6.9□□□□□ -1.3
HMGB1P13-201ENST00000406019 PFKLP17858 780 aa6.9□□□□□ -1.3
HMGB1P13-201ENST00000406019 FOXO4P98177 505 aa6.9□□□□□ -1.3
HMGB1P13-201ENST00000406019 CACNB2Q08289 660 aaPredicted RBP6.9□□□□□ -1.3
HMGB1P13-201ENST00000406019 FBLN7Q53RD9 439 aa6.9□□□□□ -1.3
HMGB1P13-201ENST00000406019 ZC3H12BQ5HYM0 836 aaKnown RBP6.9□□□□□ -1.3
HMGB1P13-201ENST00000406019 CNKSR3Q6P9H4 555 aa6.9□□□□□ -1.3
HMGB1P13-201ENST00000406019 KRT26Q7Z3Y9 468 aa6.9□□□□□ -1.3
HMGB1P13-201ENST00000406019 FNIP1Q8TF40 1166 aa6.9□□□□□ -1.3
HMGB1P13-201ENST00000406019 STAG1Q8WVM7 1258 aa6.9□□□□□ -1.3
HMGB1P13-201ENST00000406019 CLDND1Q9NY35 253 aa6.9□□□□□ -1.3
HMGB1P13-201ENST00000406019 CD2APQ9Y5K6 639 aa6.9□□□□□ -1.3
HMGB1P13-201ENST00000406019 FFAR3O14843 346 aa6.89□□□□□ -1.31
HMGB1P13-201ENST00000406019 TRIM13O60858 407 aa6.89□□□□□ -1.31
HMGB1P13-201ENST00000406019 AFF3P51826 1226 aaKnown RBP6.89□□□□□ -1.31
HMGB1P13-201ENST00000406019 GPR85P60893 370 aa6.89□□□□□ -1.31
HMGB1P13-201ENST00000406019 SCUBE1Q8IWY4 988 aa6.89□□□□□ -1.31
HMGB1P13-201ENST00000406019 PUM2Q8TB72 1066 aaKnown RBP eCLIP6.89□□□□□ -1.31
HMGB1P13-201ENST00000406019 NOX5Q96PH1 765 aa6.89□□□□□ -1.31
HMGB1P13-201ENST00000406019 EPB41L1Q9H4G0 881 aa6.89□□□□□ -1.31
HMGB1P13-201ENST00000406019 DDX56Q9NY93 547 aaKnown RBP6.89□□□□□ -1.31
HMGB1P13-201ENST00000406019 KLHL42Q9P2K6 505 aa6.89□□□□□ -1.31
HMGB1P13-201ENST00000406019 TRBV23-1A0A0A0MS06 115 aa6.88□□□□□ -1.31
HMGB1P13-201ENST00000406019 TCRBV5S2A0A599 114 aa6.88□□□□□ -1.31
HMGB1P13-201ENST00000406019 FAM126BQ8IXS8 530 aa6.88□□□□□ -1.31
HMGB1P13-201ENST00000406019 SMARCC2Q8TAQ2 1214 aa6.88□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms