RNA–Protein interactions for RNA: ENST00000396625.3

COL4A4-201, Transcript of collagen type IV alpha 4 chain, humanhuman

APPRIS P1 TSL 5 BASIC

Gene COL4A4, Length 9,895 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A4-201ENST00000396625 FAM178BQ8IXR5 827 aa11.13□□□□□ -0.63
COL4A4-201ENST00000396625 ASPSCR1Q9BZE9 553 aa11.13□□□□□ -0.63
COL4A4-201ENST00000396625 NDE1Q9NXR1 346 aa11.13□□□□□ -0.63
COL4A4-201ENST00000396625 ARHGAP26Q9UNA1 814 aa11.13□□□□□ -0.63
COL4A4-201ENST00000396625 AOX1Q06278 1338 aa11.13□□□□□ -0.63
COL4A4-201ENST00000396625 KRT87PA6NCN2 255 aa11.13□□□□□ -0.63
COL4A4-201ENST00000396625 GPAA1O43292 621 aa11.13□□□□□ -0.63
COL4A4-201ENST00000396625 MMEP08473 750 aa11.13□□□□□ -0.63
COL4A4-201ENST00000396625 MAPK4P31152 587 aa11.13□□□□□ -0.63
COL4A4-201ENST00000396625 KRT33BQ14525 404 aa11.13□□□□□ -0.63
COL4A4-201ENST00000396625 TADA2BQ86TJ2 420 aa11.13□□□□□ -0.63
COL4A4-201ENST00000396625 MRPL50Q8N5N7 158 aaKnown RBP11.13□□□□□ -0.63
COL4A4-201ENST00000396625 VPS54Q9P1Q0 977 aa11.13□□□□□ -0.63
COL4A4-201ENST00000396625 IRS4O14654 1257 aaPredicted RBP11.13□□□□□ -0.63
COL4A4-201ENST00000396625 LZTS3O60299 673 aaPredicted RBP11.13□□□□□ -0.63
COL4A4-201ENST00000396625 TRAPPC10P48553 1259 aa11.13□□□□□ -0.63
COL4A4-201ENST00000396625 EXOC3L4Q17RC7 722 aa11.13□□□□□ -0.63
COL4A4-201ENST00000396625 NEK8Q86SG6 692 aa11.13□□□□□ -0.63
COL4A4-201ENST00000396625 PATL1Q86TB9 770 aaKnown RBP11.13□□□□□ -0.63
COL4A4-201ENST00000396625 DHX38Q92620 1227 aaKnown RBP11.13□□□□□ -0.63
COL4A4-201ENST00000396625 TESK2Q96S53 571 aa11.13□□□□□ -0.63
COL4A4-201ENST00000396625 HSPA4LO95757 839 aa11.13□□□□□ -0.63
COL4A4-201ENST00000396625 RPN1P04843 607 aaKnown RBP11.13□□□□□ -0.63
COL4A4-201ENST00000396625 TMED10P49755 219 aaKnown RBP11.13□□□□□ -0.63
COL4A4-201ENST00000396625 CUL1Q13616 776 aa11.13□□□□□ -0.63
COL4A4-201ENST00000396625 CNGA3Q16281 694 aa11.13□□□□□ -0.63
COL4A4-201ENST00000396625 GCNT4Q9P109 453 aa11.13□□□□□ -0.63
COL4A4-201ENST00000396625 GSNP06396 782 aa11.13□□□□□ -0.63
COL4A4-201ENST00000396625 TMEM191BP0C7N4 346 aa11.13□□□□□ -0.63
COL4A4-201ENST00000396625 PFKFB1P16118 471 aa11.13□□□□□ -0.63
COL4A4-201ENST00000396625 CDC25BP30305 580 aa11.13□□□□□ -0.63
COL4A4-201ENST00000396625 ADCK1Q86TW2 530 aa11.13□□□□□ -0.63
COL4A4-201ENST00000396625 NLRX1Q86UT6 975 aa11.13□□□□□ -0.63
COL4A4-201ENST00000396625 NOSTRINQ8IVI9 506 aa11.13□□□□□ -0.63
COL4A4-201ENST00000396625 PPARGC1AQ9UBK2 798 aaKnown RBP11.13□□□□□ -0.63
COL4A4-201ENST00000396625 ABCC1P33527 1531 aa11.13□□□□□ -0.63
COL4A4-201ENST00000396625 CCDC195A0A1B0GUA6 201 aa11.13□□□□□ -0.63
COL4A4-201ENST00000396625 CFBP00751 764 aa11.13□□□□□ -0.63
COL4A4-201ENST00000396625 SOX5P35711 763 aa11.13□□□□□ -0.63
COL4A4-201ENST00000396625 ADCY2Q08462 1091 aa11.13□□□□□ -0.63
COL4A4-201ENST00000396625 TAF1BQ53T94 588 aaPredicted RBP11.13□□□□□ -0.63
COL4A4-201ENST00000396625 ACAD11Q709F0 780 aa11.13□□□□□ -0.63
COL4A4-201ENST00000396625 SYT2Q8N9I0 419 aaPredicted RBP11.13□□□□□ -0.63
COL4A4-201ENST00000396625 NSFL1CQ9UNZ2 370 aaKnown RBP11.13□□□□□ -0.63
COL4A4-201ENST00000396625 WASLO00401 505 aaPredicted RBP11.12□□□□□ -0.63
COL4A4-201ENST00000396625 CCNYQ8ND76 341 aa11.12□□□□□ -0.63
COL4A4-201ENST00000396625 TDRD7Q8NHU6 1098 aaKnown RBP11.12□□□□□ -0.63
COL4A4-201ENST00000396625 RBM17Q96I25 401 aaKnown RBP11.12□□□□□ -0.63
COL4A4-201ENST00000396625 H0Y626 953 aa11.12□□□□□ -0.63
COL4A4-201ENST00000396625 TRIM16O95361 564 aa11.12□□□□□ -0.63
COL4A4-201ENST00000396625 CXCR5P32302 372 aa11.12□□□□□ -0.63
COL4A4-201ENST00000396625 EIF3BP55884 814 aaKnown RBP11.12□□□□□ -0.63
COL4A4-201ENST00000396625 TEDDM1Q5T9Z0 273 aa11.12□□□□□ -0.63
COL4A4-201ENST00000396625 PHF21AQ96BD5 680 aa11.12□□□□□ -0.63
COL4A4-201ENST00000396625 ZNF653Q96CK0 615 aa11.12□□□□□ -0.63
COL4A4-201ENST00000396625 DDX25Q9UHL0 483 aaKnown RBP11.12□□□□□ -0.63
COL4A4-201ENST00000396625 RASSF10A6NK89 507 aa11.12□□□□□ -0.63
COL4A4-201ENST00000396625 MYO1FO00160 1098 aa11.12□□□□□ -0.63
COL4A4-201ENST00000396625 ATP8B1O43520 1251 aa11.12□□□□□ -0.63
COL4A4-201ENST00000396625 KRT1P04264 644 aa11.12□□□□□ -0.63
COL4A4-201ENST00000396625 RSRC2Q7L4I2 434 aaKnown RBP11.12□□□□□ -0.63
COL4A4-201ENST00000396625 HDDC2Q7Z4H3 204 aa11.12□□□□□ -0.63
COL4A4-201ENST00000396625 OTULINQ96BN8 352 aa11.12□□□□□ -0.63
COL4A4-201ENST00000396625 ADPGKQ9BRR6 497 aa11.12□□□□□ -0.63
COL4A4-201ENST00000396625 MAGI1Q96QZ7 1491 aaPredicted RBP11.12□□□□□ -0.63
COL4A4-201ENST00000396625 hCG_1642624A0A1W2PR95 340 aa11.12□□□□□ -0.63
COL4A4-201ENST00000396625 SUPT3HO75486 399 aa11.12□□□□□ -0.63
COL4A4-201ENST00000396625 TBC1D1Q86TI0 1168 aaPredicted RBP11.12□□□□□ -0.63
COL4A4-201ENST00000396625 PLD3Q8IV08 490 aa11.12□□□□□ -0.63
COL4A4-201ENST00000396625 STMN3Q9NZ72 180 aa11.12□□□□□ -0.63
COL4A4-201ENST00000396625 ZNF212Q9UDV6 495 aa11.12□□□□□ -0.63
COL4A4-201ENST00000396625 PARP3Q9Y6F1 533 aa11.12□□□□□ -0.63
COL4A4-201ENST00000396625 DEAF1O75398 565 aaPredicted RBP11.12□□□□□ -0.63
COL4A4-201ENST00000396625 ETF1P62495 437 aaKnown RBP11.12□□□□□ -0.63
COL4A4-201ENST00000396625 MECOMQ03112 1051 aa11.12□□□□□ -0.63
COL4A4-201ENST00000396625 CTDSPL2Q05D32 466 aa11.12□□□□□ -0.63
COL4A4-201ENST00000396625 CCDC142Q17RM4 750 aa11.12□□□□□ -0.63
COL4A4-201ENST00000396625 KCNV2Q8TDN2 545 aa11.12□□□□□ -0.63
COL4A4-201ENST00000396625 TRAF3IP3Q9Y228 551 aa11.12□□□□□ -0.63
COL4A4-201ENST00000396625 BPIFB4P59827 614 aa11.12□□□□□ -0.63
COL4A4-201ENST00000396625 C10orf76Q5T2E6 689 aa11.12□□□□□ -0.63
COL4A4-201ENST00000396625 KHDRBS2Q5VWX1 349 aaKnown RBP11.12□□□□□ -0.63
COL4A4-201ENST00000396625 MID2Q9UJV3 735 aa11.12□□□□□ -0.63
COL4A4-201ENST00000396625 CDC23Q9UJX2 597 aa11.12□□□□□ -0.63
COL4A4-201ENST00000396625 MAP3K5Q99683 1374 aa11.12□□□□□ -0.63
COL4A4-201ENST00000396625 F8W8V4 182 aa11.12□□□□□ -0.63
COL4A4-201ENST00000396625 MAP4P27816 1152 aaKnown RBP11.12□□□□□ -0.63
COL4A4-201ENST00000396625 DR1Q01658 176 aa11.12□□□□□ -0.63
COL4A4-201ENST00000396625 ZBED4O75132 1171 aa11.12□□□□□ -0.63
COL4A4-201ENST00000396625 PPP2R5BQ15173 497 aa11.12□□□□□ -0.63
COL4A4-201ENST00000396625 OTUB1Q96FW1 271 aaPredicted RBP11.12□□□□□ -0.63
COL4A4-201ENST00000396625 APOBEC2Q9Y235 224 aaKnown RBP11.12□□□□□ -0.63
COL4A4-201ENST00000396625 HSPA1AP0DMV8 641 aaKnown RBP11.11□□□□□ -0.63
COL4A4-201ENST00000396625 HSPA1BP0DMV9 641 aaKnown RBP11.11□□□□□ -0.63
COL4A4-201ENST00000396625 DMC1Q14565 340 aa11.11□□□□□ -0.63
COL4A4-201ENST00000396625 KRT40Q6A162 431 aa11.11□□□□□ -0.63
COL4A4-201ENST00000396625 TMPRSS15P98073 1019 aa11.11□□□□□ -0.63
COL4A4-201ENST00000396625 ARHGAP18Q8N392 663 aa11.11□□□□□ -0.63
COL4A4-201ENST00000396625 ACRBPQ8NEB7 543 aa11.11□□□□□ -0.63
COL4A4-201ENST00000396625 FAM193BQ96PV7 902 aaPredicted RBP11.11□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 78 ms