RNA–Protein interactions for RNA: ENST00000394269.7

TCOF1-203, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene TCOF1, Length 3,400 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-203ENST00000394269 FGFBP2Q9BYJ0 223 aa12.4□□□□□ -0.42
TCOF1-203ENST00000394269 GLT8D2Q9H1C3 349 aa12.4□□□□□ -0.42
TCOF1-203ENST00000394269 AGPAT5Q9NUQ2 364 aa12.4□□□□□ -0.42
TCOF1-203ENST00000394269 TMX2Q9Y320 296 aa12.4□□□□□ -0.42
TCOF1-203ENST00000394269 CDK5RAP2Q96SN8 1893 aa12.4□□□□□ -0.43
TCOF1-203ENST00000394269 ZBTB39O15060 712 aa12.39□□□□□ -0.43
TCOF1-203ENST00000394269 ALAS1P13196 640 aa12.39□□□□□ -0.43
TCOF1-203ENST00000394269 CATSPER3Q86XQ3 398 aa12.39□□□□□ -0.43
TCOF1-203ENST00000394269 MICALL2Q8IY33 904 aa12.39□□□□□ -0.43
TCOF1-203ENST00000394269 CCDC155Q8N6L0 562 aa12.39□□□□□ -0.43
TCOF1-203ENST00000394269 BCAS3Q9H6U6 928 aa12.39□□□□□ -0.43
TCOF1-203ENST00000394269 GCOM1H8Y6P7 765 aaPredicted RBP12.39□□□□□ -0.43
TCOF1-203ENST00000394269 ABL1P00519 1130 aa12.39□□□□□ -0.43
TCOF1-203ENST00000394269 POLR2MP0CAP2 368 aa12.39□□□□□ -0.43
TCOF1-203ENST00000394269 CASQ1P31415 396 aa12.39□□□□□ -0.43
TCOF1-203ENST00000394269 INPP5BP32019 993 aa12.39□□□□□ -0.43
TCOF1-203ENST00000394269 MNS1Q8NEH6 495 aa12.39□□□□□ -0.43
TCOF1-203ENST00000394269 ZBTB9Q96C00 473 aa12.39□□□□□ -0.43
TCOF1-203ENST00000394269 CRACR2AQ9BSW2 395 aa12.39□□□□□ -0.43
TCOF1-203ENST00000394269 BHMT2Q9H2M3 363 aa12.39□□□□□ -0.43
TCOF1-203ENST00000394269 MAGEF1Q9HAY2 307 aa12.39□□□□□ -0.43
TCOF1-203ENST00000394269 CNTNAP1P78357 1384 aa12.39□□□□□ -0.43
TCOF1-203ENST00000394269 OPLAHO14841 1288 aa12.39□□□□□ -0.43
TCOF1-203ENST00000394269 MSH4O15457 936 aa12.39□□□□□ -0.43
TCOF1-203ENST00000394269 ELF2Q15723 593 aa12.39□□□□□ -0.43
TCOF1-203ENST00000394269 CCDC40Q4G0X9 1142 aa12.39□□□□□ -0.43
TCOF1-203ENST00000394269 FAM26FQ5R3K3 315 aa12.39□□□□□ -0.43
TCOF1-203ENST00000394269 PDCL2Q8N4E4 241 aa12.39□□□□□ -0.43
TCOF1-203ENST00000394269 SH2D3AQ9BRG2 576 aa12.39□□□□□ -0.43
TCOF1-203ENST00000394269 VCPKMTQ9H867 229 aa12.39□□□□□ -0.43
TCOF1-203ENST00000394269 ABHD10Q9NUJ1 306 aa12.39□□□□□ -0.43
TCOF1-203ENST00000394269 CCPG1Q9ULG6 757 aa12.39□□□□□ -0.43
TCOF1-203ENST00000394269 DNM3Q9UQ16 869 aa12.39□□□□□ -0.43
TCOF1-203ENST00000394269 LTBP1Q14766 1721 aa12.38□□□□□ -0.43
TCOF1-203ENST00000394269 LRRC10BA6NIK2 292 aa12.38□□□□□ -0.43
TCOF1-203ENST00000394269 SPDYE4A6NLX3 237 aa12.38□□□□□ -0.43
TCOF1-203ENST00000394269 KIF2AO00139 706 aaPredicted RBP12.38□□□□□ -0.43
TCOF1-203ENST00000394269 GMPSP49915 693 aaPredicted RBP12.38□□□□□ -0.43
TCOF1-203ENST00000394269 COASYQ13057 564 aa12.38□□□□□ -0.43
TCOF1-203ENST00000394269 ERCC6LQ2NKX8 1250 aa12.38□□□□□ -0.43
TCOF1-203ENST00000394269 ARHGAP27Q6ZUM4 889 aa12.38□□□□□ -0.43
TCOF1-203ENST00000394269 LDHDQ86WU2 507 aa12.38□□□□□ -0.43
TCOF1-203ENST00000394269 NT5C3AQ9H0P0 336 aa12.38□□□□□ -0.43
TCOF1-203ENST00000394269 CNOT7Q9UIV1 285 aaKnown RBP12.38□□□□□ -0.43
TCOF1-203ENST00000394269 LRRC37AA6NMS7 1700 aa12.38□□□□□ -0.43
TCOF1-203ENST00000394269 NPM3O75607 178 aaKnown RBP12.38□□□□□ -0.43
TCOF1-203ENST00000394269 FLOT1O75955 427 aa12.38□□□□□ -0.43
TCOF1-203ENST00000394269 EEF1GP26641 437 aaKnown RBP12.38□□□□□ -0.43
TCOF1-203ENST00000394269 PLS1Q14651 629 aa12.38□□□□□ -0.43
TCOF1-203ENST00000394269 ZNF569Q5MCW4 686 aa12.38□□□□□ -0.43
TCOF1-203ENST00000394269 FKBP15Q5T1M5 1219 aa12.38□□□□□ -0.43
TCOF1-203ENST00000394269 SLFN12Q8IYM2 578 aa12.38□□□□□ -0.43
TCOF1-203ENST00000394269 MYOCDQ8IZQ8 938 aa12.38□□□□□ -0.43
TCOF1-203ENST00000394269 AGBL3Q8NEM8 1001 aa12.38□□□□□ -0.43
TCOF1-203ENST00000394269 ERMNQ8TAM6 284 aa12.38□□□□□ -0.43
TCOF1-203ENST00000394269 NOC3LQ8WTT2 800 aaKnown RBP12.38□□□□□ -0.43
TCOF1-203ENST00000394269 THAP9Q9H5L6 903 aa12.38□□□□□ -0.43
TCOF1-203ENST00000394269 RAVER2Q9HCJ3 691 aaKnown RBP12.38□□□□□ -0.43
TCOF1-203ENST00000394269 SAMM50Q9Y512 469 aa12.38□□□□□ -0.43
TCOF1-203ENST00000394269 LGALS16A8MUM7 142 aa12.37□□□□□ -0.43
TCOF1-203ENST00000394269 SLU7O95391 586 aaKnown RBP12.37□□□□□ -0.43
TCOF1-203ENST00000394269 ASNSP08243 561 aa12.37□□□□□ -0.43
TCOF1-203ENST00000394269 NCBP1Q09161 790 aaKnown RBP12.37□□□□□ -0.43
TCOF1-203ENST00000394269 AP3B2Q13367 1082 aa12.37□□□□□ -0.43
TCOF1-203ENST00000394269 PANX2Q96RD6 677 aa12.37□□□□□ -0.43
TCOF1-203ENST00000394269 GUCA1BQ9UMX6 200 aa12.37□□□□□ -0.43
TCOF1-203ENST00000394269 FAM170AA1A519 330 aa12.37□□□□□ -0.43
TCOF1-203ENST00000394269 EML1O00423 815 aa12.37□□□□□ -0.43
TCOF1-203ENST00000394269 FOSP01100 380 aaPredicted RBP12.37□□□□□ -0.43
TCOF1-203ENST00000394269 PBX1P40424 430 aa12.37□□□□□ -0.43
TCOF1-203ENST00000394269 ERVK-24P63145 666 aa12.37□□□□□ -0.43
TCOF1-203ENST00000394269 NBPF12Q5TAG4 269 aaPredicted RBP12.37□□□□□ -0.43
TCOF1-203ENST00000394269 TRIM65Q6PJ69 517 aa12.37□□□□□ -0.43
TCOF1-203ENST00000394269 CCDC65Q8IXS2 484 aa12.37□□□□□ -0.43
TCOF1-203ENST00000394269 SMCR8Q8TEV9 937 aaPredicted RBP12.37□□□□□ -0.43
TCOF1-203ENST00000394269 ZKSCAN4Q969J2 545 aaPredicted RBP12.37□□□□□ -0.43
TCOF1-203ENST00000394269 TSG101Q99816 390 aa12.37□□□□□ -0.43
TCOF1-203ENST00000394269 CARD6Q9BX69 1037 aa12.37□□□□□ -0.43
TCOF1-203ENST00000394269 PDCL3Q9H2J4 239 aa12.37□□□□□ -0.43
TCOF1-203ENST00000394269 ATRNL1Q5VV63 1379 aa12.37□□□□□ -0.43
TCOF1-203ENST00000394269 SPP2Q13103 211 aa12.37□□□□□ -0.43
TCOF1-203ENST00000394269 ORC2Q13416 577 aaPredicted RBP12.37□□□□□ -0.43
TCOF1-203ENST00000394269 TNIP1Q15025 636 aa12.37□□□□□ -0.43
TCOF1-203ENST00000394269 LRCH2Q5VUJ6 765 aa12.37□□□□□ -0.43
TCOF1-203ENST00000394269 HAUS3Q68CZ6 603 aa12.37□□□□□ -0.43
TCOF1-203ENST00000394269 OR8K1Q8NGG5 319 aa12.37□□□□□ -0.43
TCOF1-203ENST00000394269 SLC16A10Q8TF71 515 aa12.37□□□□□ -0.43
TCOF1-203ENST00000394269 HOOK2Q96ED9 719 aa12.37□□□□□ -0.43
TCOF1-203ENST00000394269 DEFB129Q9H1M3 183 aa12.37□□□□□ -0.43
TCOF1-203ENST00000394269 EPC1Q9H2F5 836 aa12.37□□□□□ -0.43
TCOF1-203ENST00000394269 KCNMB3Q9NPA1 279 aa12.37□□□□□ -0.43
TCOF1-203ENST00000394269 ADGRG1Q9Y653 693 aa12.37□□□□□ -0.43
TCOF1-203ENST00000394269 RSPH10B2B2RC85 870 aa12.36□□□□□ -0.43
TCOF1-203ENST00000394269 NFKBIEO00221 500 aa12.36□□□□□ -0.43
TCOF1-203ENST00000394269 RSPH10BP0C881 870 aa12.36□□□□□ -0.43
TCOF1-203ENST00000394269 DNM2P50570 870 aa12.36□□□□□ -0.43
TCOF1-203ENST00000394269 ARID5AQ03989 594 aa12.36□□□□□ -0.43
TCOF1-203ENST00000394269 NSMFQ6X4W1 530 aa12.36□□□□□ -0.43
TCOF1-203ENST00000394269 FAM114A1Q8IWE2 563 aa12.36□□□□□ -0.43
TCOF1-203ENST00000394269 LRRC27Q9C0I9 530 aa12.36□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 28.8 ms