RNA–Protein interactions for RNA: ENST00000393211.3

COL17A1-203, Transcript of collagen type XVII alpha 1 chain, humanhuman

TSL 1 (best) BASIC

Gene COL17A1, Length 1,610 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL17A1-203ENST00000393211 COL4A3BPQ9Y5P4 624 aa11.04□□□□□ -0.64
COL17A1-203ENST00000393211 PLIN4Q96Q06 1357 aa11.04□□□□□ -0.64
COL17A1-203ENST00000393211 C10orf71Q711Q0 1435 aa11.04□□□□□ -0.64
COL17A1-203ENST00000393211 GCFC2P16383 781 aaKnown RBP11.03□□□□□ -0.64
COL17A1-203ENST00000393211 ANXA13P27216 316 aa11.03□□□□□ -0.64
COL17A1-203ENST00000393211 ADCY7P51828 1080 aa11.03□□□□□ -0.64
COL17A1-203ENST00000393211 EZH2Q15910 746 aaKnown RBP11.03□□□□□ -0.64
COL17A1-203ENST00000393211 ASPRV1Q53RT3 343 aa11.03□□□□□ -0.64
COL17A1-203ENST00000393211 KDM7AQ6ZMT4 941 aa11.03□□□□□ -0.64
COL17A1-203ENST00000393211 ZNF804AQ7Z570 1209 aa11.03□□□□□ -0.64
COL17A1-203ENST00000393211 NBPF5PQ86XG9 351 aaPredicted RBP11.03□□□□□ -0.64
COL17A1-203ENST00000393211 SLF2Q8IX21 1173 aa11.03□□□□□ -0.64
COL17A1-203ENST00000393211 IQCKQ8N0W5 287 aa11.03□□□□□ -0.64
COL17A1-203ENST00000393211 TGFBRAP1Q8WUH2 860 aa11.03□□□□□ -0.64
COL17A1-203ENST00000393211 HDAC7Q8WUI4 952 aa11.03□□□□□ -0.64
COL17A1-203ENST00000393211 GDAP1L1Q96MZ0 367 aa11.03□□□□□ -0.64
COL17A1-203ENST00000393211 PAGR1Q9BTK6 254 aa11.03□□□□□ -0.64
COL17A1-203ENST00000393211 NT5C3AQ9H0P0 336 aa11.03□□□□□ -0.64
COL17A1-203ENST00000393211 BMP2KQ9NSY1 1161 aaPredicted RBP11.03□□□□□ -0.64
COL17A1-203ENST00000393211 ATP6V0A2Q9Y487 856 aa11.03□□□□□ -0.64
COL17A1-203ENST00000393211 GRIN2DO15399 1336 aa11.03□□□□□ -0.64
COL17A1-203ENST00000393211 KDM3AQ9Y4C1 1321 aa11.03□□□□□ -0.64
COL17A1-203ENST00000393211 SBF2Q86WG5 1849 aa11.03□□□□□ -0.64
COL17A1-203ENST00000393211 CDK5RAP2Q96SN8 1893 aa11.03□□□□□ -0.64
COL17A1-203ENST00000393211 GPR75-ASB3A0A0A6YYF3 556 aa11.02□□□□□ -0.64
COL17A1-203ENST00000393211 GOLGA8HP0CJ92 632 aa11.02□□□□□ -0.64
COL17A1-203ENST00000393211 TM4SF1P30408 202 aa11.02□□□□□ -0.64
COL17A1-203ENST00000393211 GNGT1P63211 74 aa11.02□□□□□ -0.64
COL17A1-203ENST00000393211 RASSF7Q02833 373 aa11.02□□□□□ -0.64
COL17A1-203ENST00000393211 KCNMA1Q12791 1236 aa11.02□□□□□ -0.64
COL17A1-203ENST00000393211 SLC18A3Q16572 532 aa11.02□□□□□ -0.64
COL17A1-203ENST00000393211 IFI16Q16666 785 aaKnown RBP11.02□□□□□ -0.64
COL17A1-203ENST00000393211 FAM83BQ5T0W9 1011 aa11.02□□□□□ -0.64
COL17A1-203ENST00000393211 CFAP58Q5T655 872 aa11.02□□□□□ -0.64
COL17A1-203ENST00000393211 MEI1Q5TIA1 1274 aa11.02□□□□□ -0.64
COL17A1-203ENST00000393211 ICE2Q659A1 982 aa11.02□□□□□ -0.64
COL17A1-203ENST00000393211 PPP4R3CPQ6ZMV5 832 aa11.02□□□□□ -0.64
COL17A1-203ENST00000393211 SUGP1Q8IWZ8 645 aaKnown RBP11.02□□□□□ -0.64
COL17A1-203ENST00000393211 ZC3H3Q8IXZ2 948 aaKnown RBP11.02□□□□□ -0.64
COL17A1-203ENST00000393211 LINC00116Q8NCU8 138 aa11.02□□□□□ -0.64
COL17A1-203ENST00000393211 BCAS4Q8TDM0 211 aa11.02□□□□□ -0.64
COL17A1-203ENST00000393211 DDX12PQ92771 950 aa11.02□□□□□ -0.64
COL17A1-203ENST00000393211 MTMR8Q96EF0 704 aa11.02□□□□□ -0.64
COL17A1-203ENST00000393211 FAM163AQ96GL9 167 aaPredicted RBP11.02□□□□□ -0.64
COL17A1-203ENST00000393211 PIGSQ96S52 555 aa11.02□□□□□ -0.64
COL17A1-203ENST00000393211 RTFDC1Q9BY42 306 aaPredicted RBP11.02□□□□□ -0.64
COL17A1-203ENST00000393211 RBM12Q9NTZ6 932 aaKnown RBP11.02□□□□□ -0.64
COL17A1-203ENST00000393211 AIPL1Q9NZN9 384 aa11.02□□□□□ -0.64
COL17A1-203ENST00000393211 BIN2Q9UBW5 565 aaPredicted RBP11.02□□□□□ -0.64
COL17A1-203ENST00000393211 GGA2Q9UJY4 613 aa11.02□□□□□ -0.64
COL17A1-203ENST00000393211 MYH10P35580 1976 aa11.02□□□□□ -0.65
COL17A1-203ENST00000393211 RPS6KA4O75676 772 aa11.02□□□□□ -0.65
COL17A1-203ENST00000393211 SLC1A4P43007 532 aa11.02□□□□□ -0.65
COL17A1-203ENST00000393211 CCT5P48643 541 aa11.02□□□□□ -0.65
COL17A1-203ENST00000393211 TNNC1P63316 161 aa11.02□□□□□ -0.65
COL17A1-203ENST00000393211 GFPT1Q06210 699 aaPredicted RBP11.02□□□□□ -0.65
COL17A1-203ENST00000393211 CDC37Q16543 378 aaPredicted RBP11.02□□□□□ -0.65
COL17A1-203ENST00000393211 CCDC40Q4G0X9 1142 aa11.02□□□□□ -0.65
COL17A1-203ENST00000393211 TDRD12Q587J7 1177 aaKnown RBP11.02□□□□□ -0.65
COL17A1-203ENST00000393211 PACS2Q86VP3 889 aa11.02□□□□□ -0.65
COL17A1-203ENST00000393211 TXNRD3Q86VQ6 643 aa11.02□□□□□ -0.65
COL17A1-203ENST00000393211 TSEN2Q8NCE0 465 aaKnown RBP11.02□□□□□ -0.65
COL17A1-203ENST00000393211 SNX29Q8TEQ0 813 aa11.02□□□□□ -0.65
COL17A1-203ENST00000393211 EEF2KMTQ96G04 330 aa11.02□□□□□ -0.65
COL17A1-203ENST00000393211 DRC1Q96MC2 740 aa11.02□□□□□ -0.65
COL17A1-203ENST00000393211 GLT8D2Q9H1C3 349 aa11.02□□□□□ -0.65
COL17A1-203ENST00000393211 SWAP70Q9UH65 585 aa11.02□□□□□ -0.65
COL17A1-203ENST00000393211 SALL4Q9UJQ4 1053 aa11.02□□□□□ -0.65
COL17A1-203ENST00000393211 BZW2Q9Y6E2 419 aaKnown RBP11.02□□□□□ -0.65
COL17A1-203ENST00000393211 FAM169AQ9Y6X4 670 aa11.02□□□□□ -0.65
COL17A1-203ENST00000393211 NHSQ6T4R5 1651 aa11.01□□□□□ -0.65
COL17A1-203ENST00000393211 A0A0G2JS52 829 aa11.01□□□□□ -0.65
COL17A1-203ENST00000393211 HMGB1P1B2RPK0 211 aaPredicted RBP11.01□□□□□ -0.65
COL17A1-203ENST00000393211 NKRFO15226 690 aaKnown RBP eCLIP11.01□□□□□ -0.65
COL17A1-203ENST00000393211 NOL4O94818 638 aa11.01□□□□□ -0.65
COL17A1-203ENST00000393211 MATR3P43243 847 aaKnown RBP eCLIP11.01□□□□□ -0.65
COL17A1-203ENST00000393211 SLC7A5Q01650 507 aa11.01□□□□□ -0.65
COL17A1-203ENST00000393211 COASYQ13057 564 aa11.01□□□□□ -0.65
COL17A1-203ENST00000393211 EDRF1Q3B7T1 1238 aa11.01□□□□□ -0.65
COL17A1-203ENST00000393211 TTMPQ5BVD1 217 aa11.01□□□□□ -0.65
COL17A1-203ENST00000393211 FAM26FQ5R3K3 315 aa11.01□□□□□ -0.65
COL17A1-203ENST00000393211 USP17L2Q6R6M4 530 aa11.01□□□□□ -0.65
COL17A1-203ENST00000393211 LRIG3Q6UXM1 1119 aa11.01□□□□□ -0.65
COL17A1-203ENST00000393211 MICALCLQ6ZW33 695 aa11.01□□□□□ -0.65
COL17A1-203ENST00000393211 DYMQ7RTS9 669 aa11.01□□□□□ -0.65
COL17A1-203ENST00000393211 YTHDF3Q7Z739 585 aaKnown RBP11.01□□□□□ -0.65
COL17A1-203ENST00000393211 TRIM59Q8IWR1 403 aa11.01□□□□□ -0.65
COL17A1-203ENST00000393211 CCDC65Q8IXS2 484 aa11.01□□□□□ -0.65
COL17A1-203ENST00000393211 SLC44A5Q8NCS7 719 aa11.01□□□□□ -0.65
COL17A1-203ENST00000393211 HPS3Q969F9 1004 aa11.01□□□□□ -0.65
COL17A1-203ENST00000393211 DNAJC19Q96DA6 116 aa11.01□□□□□ -0.65
COL17A1-203ENST00000393211 PBKQ96KB5 322 aa11.01□□□□□ -0.65
COL17A1-203ENST00000393211 ZIM3Q96PE6 472 aa11.01□□□□□ -0.65
COL17A1-203ENST00000393211 TANGO6Q9C0B7 1094 aa11.01□□□□□ -0.65
COL17A1-203ENST00000393211 SPATA31A5Q5VU36 1347 aa11.01□□□□□ -0.65
COL17A1-203ENST00000393211 SPATA31A7Q8IWB4 1347 aa11.01□□□□□ -0.65
COL17A1-203ENST00000393211 KIF13BQ9NQT8 1826 aa11□□□□□ -0.65
COL17A1-203ENST00000393211 TRAF5O00463 557 aa11□□□□□ -0.65
COL17A1-203ENST00000393211 TLR2O60603 784 aa11□□□□□ -0.65
COL17A1-203ENST00000393211 ERLIN2O94905 339 aa11□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 25 ms