RNA–Protein interactions for RNA: ENST00000379433.5

NEDD9-201, Transcript of neural precursor cell expressed, developmentally down-regulated 9, humanhuman

TSL 1 (best) BASIC

Gene NEDD9, Length 3,341 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD9-201ENST00000379433 BCAS3Q9H6U6 928 aa12.03□□□□□ -0.48
NEDD9-201ENST00000379433 MAGEC2Q9UBF1 373 aaPredicted RBP12.03□□□□□ -0.48
NEDD9-201ENST00000379433 B4DLN1 442 aa12.03□□□□□ -0.48
NEDD9-201ENST00000379433 SP4Q02446 784 aa12.03□□□□□ -0.48
NEDD9-201ENST00000379433 CIAPIN1Q6FI81 312 aa12.03□□□□□ -0.48
NEDD9-201ENST00000379433 LARP4BQ92615 738 aaKnown RBP12.03□□□□□ -0.48
NEDD9-201ENST00000379433 PPP1R13BQ96KQ4 1090 aa12.03□□□□□ -0.48
NEDD9-201ENST00000379433 ARHGEF10LQ9HCE6 1279 aa12.03□□□□□ -0.48
NEDD9-201ENST00000379433 TFR2Q9UP52 801 aa12.03□□□□□ -0.48
NEDD9-201ENST00000379433 LAMB1P07942 1786 aa12.02□□□□□ -0.48
NEDD9-201ENST00000379433 EDIL3O43854 480 aa12.02□□□□□ -0.49
NEDD9-201ENST00000379433 ECM2O94769 699 aaPredicted RBP12.02□□□□□ -0.49
NEDD9-201ENST00000379433 SNHG28P0DPA3 235 aa12.02□□□□□ -0.49
NEDD9-201ENST00000379433 GRB10Q13322 594 aa12.02□□□□□ -0.49
NEDD9-201ENST00000379433 PLS1Q14651 629 aa12.02□□□□□ -0.49
NEDD9-201ENST00000379433 TTC30BQ8N4P2 665 aa12.02□□□□□ -0.49
NEDD9-201ENST00000379433 DAGLBQ8NCG7 672 aa12.02□□□□□ -0.49
NEDD9-201ENST00000379433 PIGOQ8TEQ8 1089 aa12.02□□□□□ -0.49
NEDD9-201ENST00000379433 DDX12PQ92771 950 aa12.02□□□□□ -0.49
NEDD9-201ENST00000379433 CCDC47Q96A33 483 aaKnown RBP12.02□□□□□ -0.49
NEDD9-201ENST00000379433 ZBTB39O15060 712 aa12.02□□□□□ -0.49
NEDD9-201ENST00000379433 CREB3O43889 395 aa12.02□□□□□ -0.49
NEDD9-201ENST00000379433 IPO7O95373 1038 aaKnown RBP12.02□□□□□ -0.49
NEDD9-201ENST00000379433 ZNF18P17022 549 aa12.02□□□□□ -0.49
NEDD9-201ENST00000379433 ERCC5P28715 1186 aaPredicted RBP12.02□□□□□ -0.49
NEDD9-201ENST00000379433 ARHGAP4P98171 946 aa12.02□□□□□ -0.49
NEDD9-201ENST00000379433 SPATA20Q8TB22 786 aa12.02□□□□□ -0.49
NEDD9-201ENST00000379433 HAS1Q92839 578 aa12.02□□□□□ -0.49
NEDD9-201ENST00000379433 RAB34Q9BZG1 259 aa12.02□□□□□ -0.49
NEDD9-201ENST00000379433 NUCKS1Q9H1E3 243 aaKnown RBP12.02□□□□□ -0.49
NEDD9-201ENST00000379433 RMND1Q9NWS8 449 aa12.02□□□□□ -0.49
NEDD9-201ENST00000379433 RGL1Q9NZL6 768 aa12.02□□□□□ -0.49
NEDD9-201ENST00000379433 URI1O94763 535 aaPredicted RBP12.01□□□□□ -0.49
NEDD9-201ENST00000379433 FXR1P51114 621 aaKnown RBP eCLIP12.01□□□□□ -0.49
NEDD9-201ENST00000379433 MICALL2Q8IY33 904 aa12.01□□□□□ -0.49
NEDD9-201ENST00000379433 AGBL1Q96MI9 1066 aa12.01□□□□□ -0.49
NEDD9-201ENST00000379433 MYOZ2Q9NPC6 264 aa12.01□□□□□ -0.49
NEDD9-201ENST00000379433 IMPACTQ9P2X3 320 aa12.01□□□□□ -0.49
NEDD9-201ENST00000379433 RNF225M0QZC1 329 aaPredicted RBP12.01□□□□□ -0.49
NEDD9-201ENST00000379433 SMAPO00193 183 aa12.01□□□□□ -0.49
NEDD9-201ENST00000379433 LMNB1P20700 586 aa12.01□□□□□ -0.49
NEDD9-201ENST00000379433 PSMC6P62333 389 aa12.01□□□□□ -0.49
NEDD9-201ENST00000379433 MKRN3Q13064 507 aaKnown RBP12.01□□□□□ -0.49
NEDD9-201ENST00000379433 ANKRD40Q6AI12 368 aa12.01□□□□□ -0.49
NEDD9-201ENST00000379433 ZKSCAN4Q969J2 545 aaPredicted RBP12.01□□□□□ -0.49
NEDD9-201ENST00000379433 PURBQ96QR8 312 aaKnown RBP12.01□□□□□ -0.49
NEDD9-201ENST00000379433 NYAP2Q9P242 653 aa12.01□□□□□ -0.49
NEDD9-201ENST00000379433 UNCXA6NJT0 531 aa12.01□□□□□ -0.49
NEDD9-201ENST00000379433 FAM86B1E9PN63 330 aa12.01□□□□□ -0.49
NEDD9-201ENST00000379433 FAM86B2P0C5J1 330 aa12.01□□□□□ -0.49
NEDD9-201ENST00000379433 ALAS1P13196 640 aa12.01□□□□□ -0.49
NEDD9-201ENST00000379433 GNG11P61952 73 aa12.01□□□□□ -0.49
NEDD9-201ENST00000379433 PUS10Q3MIT2 529 aaKnown RBP12.01□□□□□ -0.49
NEDD9-201ENST00000379433 HERC4Q5GLZ8 1057 aaPredicted RBP12.01□□□□□ -0.49
NEDD9-201ENST00000379433 CCDC155Q8N6L0 562 aa12.01□□□□□ -0.49
NEDD9-201ENST00000379433 FEZ2Q9UHY8 353 aaPredicted RBP12.01□□□□□ -0.49
NEDD9-201ENST00000379433 AKR1B15C9JRZ8 316 aaPredicted RBP12□□□□□ -0.49
NEDD9-201ENST00000379433 MEIS2O14770 477 aa12□□□□□ -0.49
NEDD9-201ENST00000379433 INPP5BP32019 993 aa12□□□□□ -0.49
NEDD9-201ENST00000379433 COPB1P53618 953 aaKnown RBP12□□□□□ -0.49
NEDD9-201ENST00000379433 TATDN1Q6P1N9 297 aa12□□□□□ -0.49
NEDD9-201ENST00000379433 TPH2Q8IWU9 490 aa12□□□□□ -0.49
NEDD9-201ENST00000379433 TC2NQ8N9U0 490 aa12□□□□□ -0.49
NEDD9-201ENST00000379433 RETREG2Q8NC44 543 aa12□□□□□ -0.49
NEDD9-201ENST00000379433 MYRIPQ8NFW9 859 aa12□□□□□ -0.49
NEDD9-201ENST00000379433 NLGN2Q8NFZ4 835 aa12□□□□□ -0.49
NEDD9-201ENST00000379433 PNMA5Q96PV4 448 aa12□□□□□ -0.49
NEDD9-201ENST00000379433 CRACR2AQ9BSW2 395 aa12□□□□□ -0.49
NEDD9-201ENST00000379433 EHD4Q9H223 541 aa12□□□□□ -0.49
NEDD9-201ENST00000379433 PUF60Q9UHX1 559 aaKnown RBP12□□□□□ -0.49
NEDD9-201ENST00000379433 CDK5RAP2Q96SN8 1893 aa12□□□□□ -0.49
NEDD9-201ENST00000379433 PEX10O60683 326 aa12□□□□□ -0.49
NEDD9-201ENST00000379433 VIL1P09327 827 aaKnown RBP12□□□□□ -0.49
NEDD9-201ENST00000379433 TRIM21P19474 475 aaKnown RBP12□□□□□ -0.49
NEDD9-201ENST00000379433 GMPSP49915 693 aaPredicted RBP12□□□□□ -0.49
NEDD9-201ENST00000379433 CTTNQ14247 550 aaKnown RBP12□□□□□ -0.49
NEDD9-201ENST00000379433 NR1I3Q14994 352 aa12□□□□□ -0.49
NEDD9-201ENST00000379433 TCP11X2Q5H9J9 407 aa12□□□□□ -0.49
NEDD9-201ENST00000379433 FGFBP2Q9BYJ0 223 aa12□□□□□ -0.49
NEDD9-201ENST00000379433 CCSER1Q9C0I3 900 aa12□□□□□ -0.49
NEDD9-201ENST00000379433 FAM207AQ9NSI2 230 aaPredicted RBP12□□□□□ -0.49
NEDD9-201ENST00000379433 BLOC1S4Q9NUP1 217 aa12□□□□□ -0.49
NEDD9-201ENST00000379433 SAMM50Q9Y512 469 aa12□□□□□ -0.49
NEDD9-201ENST00000379433 TPM1P09493 284 aa11.99□□□□□ -0.49
NEDD9-201ENST00000379433 KRT9P35527 623 aa11.99□□□□□ -0.49
NEDD9-201ENST00000379433 AMPD3Q01432 767 aa11.99□□□□□ -0.49
NEDD9-201ENST00000379433 GPBP1Q86WP2 473 aa11.99□□□□□ -0.49
NEDD9-201ENST00000379433 KIF18AQ8NI77 898 aa11.99□□□□□ -0.49
NEDD9-201ENST00000379433 FAM151AQ8WW52 585 aa11.99□□□□□ -0.49
NEDD9-201ENST00000379433 FAM212AQ96EL1 285 aa11.99□□□□□ -0.49
NEDD9-201ENST00000379433 MMRN2Q9H8L6 949 aa11.99□□□□□ -0.49
NEDD9-201ENST00000379433 KBTBD4Q9NVX7 518 aa11.99□□□□□ -0.49
NEDD9-201ENST00000379433 ADD3Q9UEY8 706 aaKnown RBP11.99□□□□□ -0.49
NEDD9-201ENST00000379433 MAST2Q6P0Q8 1798 aa11.99□□□□□ -0.49
NEDD9-201ENST00000379433 KLRC4O43908 158 aa11.99□□□□□ -0.49
NEDD9-201ENST00000379433 FLOT1O75955 427 aa11.99□□□□□ -0.49
NEDD9-201ENST00000379433 NBPF12Q5TAG4 269 aaPredicted RBP11.99□□□□□ -0.49
NEDD9-201ENST00000379433 NSMFQ6X4W1 530 aa11.99□□□□□ -0.49
NEDD9-201ENST00000379433 ARHGAP27Q6ZUM4 889 aa11.99□□□□□ -0.49
NEDD9-201ENST00000379433 ADSSL1Q8N142 457 aa11.99□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 24.5 ms