RNA–Protein interactions for RNA: ENST00000378676.1

SHROOM1-202, Transcript of shroom family member 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene SHROOM1, Length 2,352 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM1-202ENST00000378676 ZBTB5O15062 677 aa21.63■■□□□ 1.05
SHROOM1-202ENST00000378676 ZMYND10O75800 440 aa21.63■■□□□ 1.05
SHROOM1-202ENST00000378676 LCA5LO95447 670 aa21.63■■□□□ 1.05
SHROOM1-202ENST00000378676 FGFR1OPO95684 399 aaKnown RBP21.63■■□□□ 1.05
SHROOM1-202ENST00000378676 PSMD2Q13200 908 aa21.63■■□□□ 1.05
SHROOM1-202ENST00000378676 SP8Q8IXZ3 490 aa21.63■■□□□ 1.05
SHROOM1-202ENST00000378676 MTMR8Q96EF0 704 aa21.63■■□□□ 1.05
SHROOM1-202ENST00000378676 DRC1Q96MC2 740 aa21.63■■□□□ 1.05
SHROOM1-202ENST00000378676 KLRG2A4D1S0 409 aaPredicted RBP21.63■■□□□ 1.05
SHROOM1-202ENST00000378676 KCNMA1Q12791 1236 aa21.63■■□□□ 1.05
SHROOM1-202ENST00000378676 SHROOM1Q2M3G4 852 aaPredicted RBP21.63■■□□□ 1.05
SHROOM1-202ENST00000378676 CDC42EP5Q6NZY7 148 aa21.63■■□□□ 1.05
SHROOM1-202ENST00000378676 PDXDC1Q6P996 788 aa21.63■■□□□ 1.05
SHROOM1-202ENST00000378676 GSPT2Q8IYD1 628 aaKnown RBP21.63■■□□□ 1.05
SHROOM1-202ENST00000378676 MYOCDQ8IZQ8 938 aa21.63■■□□□ 1.05
SHROOM1-202ENST00000378676 RPGRIP1Q96KN7 1286 aa21.63■■□□□ 1.05
SHROOM1-202ENST00000378676 TSG101Q99816 390 aa21.63■■□□□ 1.05
SHROOM1-202ENST00000378676 TBC1D7Q9P0N9 293 aa21.63■■□□□ 1.05
SHROOM1-202ENST00000378676 CALCOCO1Q9P1Z2 691 aa21.63■■□□□ 1.05
SHROOM1-202ENST00000378676 ATF5Q9Y2D1 282 aaPredicted RBP21.63■■□□□ 1.05
SHROOM1-202ENST00000378676 E9PMD0 336 aa21.62■■□□□ 1.05
SHROOM1-202ENST00000378676 SSBP05455 408 aaKnown RBP eCLIP21.62■■□□□ 1.05
SHROOM1-202ENST00000378676 NFIAQ12857 509 aa21.62■■□□□ 1.05
SHROOM1-202ENST00000378676 DOK7Q18PE1 504 aa21.62■■□□□ 1.05
SHROOM1-202ENST00000378676 LRRC27Q9C0I9 530 aa21.62■■□□□ 1.05
SHROOM1-202ENST00000378676 DEF6Q9H4E7 631 aa21.62■■□□□ 1.05
SHROOM1-202ENST00000378676 SNX12Q9UMY4 172 aa21.62■■□□□ 1.05
SHROOM1-202ENST00000378676 LMAN1P49257 510 aa21.62■■□□□ 1.05
SHROOM1-202ENST00000378676 CACNB1Q02641 598 aaPredicted RBP21.62■■□□□ 1.05
SHROOM1-202ENST00000378676 FAM26FQ5R3K3 315 aa21.62■■□□□ 1.05
SHROOM1-202ENST00000378676 CCDC84Q86UT8 332 aaPredicted RBP21.62■■□□□ 1.05
SHROOM1-202ENST00000378676 CCDC102AQ96A19 550 aa21.62■■□□□ 1.05
SHROOM1-202ENST00000378676 PSTPIP2Q9H939 334 aa21.62■■□□□ 1.05
SHROOM1-202ENST00000378676 PANK4Q9NVE7 773 aa21.62■■□□□ 1.05
SHROOM1-202ENST00000378676 NPHP3-ACAD11A0A0J9YXS1 232 aa21.61■■□□□ 1.05
SHROOM1-202ENST00000378676 TARSL2A2RTX5 802 aaKnown RBP21.61■■□□□ 1.05
SHROOM1-202ENST00000378676 USP17L15C9J2P7 530 aa21.61■■□□□ 1.05
SHROOM1-202ENST00000378676 USP17L13C9JLJ4 530 aa21.61■■□□□ 1.05
SHROOM1-202ENST00000378676 USP17L11C9JVI0 530 aa21.61■■□□□ 1.05
SHROOM1-202ENST00000378676 USP17L18D6R9N7 530 aa21.61■■□□□ 1.05
SHROOM1-202ENST00000378676 USP17L22D6RA61 530 aa21.61■■□□□ 1.05
SHROOM1-202ENST00000378676 USP17L17D6RBQ6 530 aa21.61■■□□□ 1.05
SHROOM1-202ENST00000378676 USP17L19D6RCP7 530 aa21.61■■□□□ 1.05
SHROOM1-202ENST00000378676 USP17L20D6RJB6 530 aa21.61■■□□□ 1.05
SHROOM1-202ENST00000378676 AKR1B10O60218 316 aa21.61■■□□□ 1.05
SHROOM1-202ENST00000378676 USO1O60763 962 aaKnown RBP21.61■■□□□ 1.05
SHROOM1-202ENST00000378676 MYBL2P10244 700 aa21.61■■□□□ 1.05
SHROOM1-202ENST00000378676 MRPL12P52815 198 aaKnown RBP21.61■■□□□ 1.05
SHROOM1-202ENST00000378676 PDE4CQ08493 712 aa21.61■■□□□ 1.05
SHROOM1-202ENST00000378676 USP17L24Q0WX57 530 aa21.61■■□□□ 1.05
SHROOM1-202ENST00000378676 GPATCH4Q5T3I0 446 aaKnown RBP21.61■■□□□ 1.05
SHROOM1-202ENST00000378676 USP17L6PQ6QN14 398 aa21.61■■□□□ 1.05
SHROOM1-202ENST00000378676 ZFPM1Q8IX07 1006 aa21.61■■□□□ 1.05
SHROOM1-202ENST00000378676 TRIM58Q8NG06 486 aa21.61■■□□□ 1.05
SHROOM1-202ENST00000378676 TANGO6Q9C0B7 1094 aa21.61■■□□□ 1.05
SHROOM1-202ENST00000378676 DNAJC18Q9H819 358 aa21.61■■□□□ 1.05
SHROOM1-202ENST00000378676 PSD3Q9NYI0 1048 aa21.61■■□□□ 1.05
SHROOM1-202ENST00000378676 PCDHA12Q9UN75 941 aa21.61■■□□□ 1.05
SHROOM1-202ENST00000378676 SUGT1Q9Y2Z0 365 aa21.61■■□□□ 1.05
SHROOM1-202ENST00000378676 ATP6V0A2Q9Y487 856 aa21.61■■□□□ 1.05
SHROOM1-202ENST00000378676 KIF13BQ9NQT8 1826 aa21.61■■□□□ 1.05
SHROOM1-202ENST00000378676 MARCH6O60337 910 aa21.61■■□□□ 1.05
SHROOM1-202ENST00000378676 HYIQ5T013 277 aa21.61■■□□□ 1.05
SHROOM1-202ENST00000378676 CREG2Q8IUH2 290 aa21.61■■□□□ 1.05
SHROOM1-202ENST00000378676 COG1Q8WTW3 980 aa21.61■■□□□ 1.05
SHROOM1-202ENST00000378676 SALL4Q9UJQ4 1053 aa21.61■■□□□ 1.05
SHROOM1-202ENST00000378676 COL4A3BPQ9Y5P4 624 aa21.61■■□□□ 1.05
SHROOM1-202ENST00000378676 POTEB3A0JP26 581 aa21.6■■□□□ 1.05
SHROOM1-202ENST00000378676 FAM196BA6NMK8 535 aa21.6■■□□□ 1.05
SHROOM1-202ENST00000378676 POTECB2RU33 542 aa21.6■■□□□ 1.05
SHROOM1-202ENST00000378676 TACC1O75410 805 aa21.6■■□□□ 1.05
SHROOM1-202ENST00000378676 TNNT3P45378 269 aaPredicted RBP21.6■■□□□ 1.05
SHROOM1-202ENST00000378676 POTEBQ6S5H4 581 aa21.6■■□□□ 1.05
SHROOM1-202ENST00000378676 PROM2Q8N271 834 aa21.6■■□□□ 1.05
SHROOM1-202ENST00000378676 JRKLQ9Y4A0 524 aa21.6■■□□□ 1.05
SHROOM1-202ENST00000378676 TRAF5O00463 557 aa21.6■■□□□ 1.05
SHROOM1-202ENST00000378676 PHACTR2O75167 634 aa21.6■■□□□ 1.05
SHROOM1-202ENST00000378676 GCFC2P16383 781 aaKnown RBP21.6■■□□□ 1.05
SHROOM1-202ENST00000378676 GFPT1Q06210 699 aaPredicted RBP21.6■■□□□ 1.05
SHROOM1-202ENST00000378676 QRICH1Q2TAL8 776 aa21.6■■□□□ 1.05
SHROOM1-202ENST00000378676 ASTE1Q2TB18 679 aaPredicted RBP21.6■■□□□ 1.05
SHROOM1-202ENST00000378676 HGSNATQ68CP4 663 aa21.6■■□□□ 1.05
SHROOM1-202ENST00000378676 NELFCDQ8IXH7 590 aa21.6■■□□□ 1.05
SHROOM1-202ENST00000378676 NLRC4Q9NPP4 1024 aa21.6■■□□□ 1.05
SHROOM1-202ENST00000378676 KIAA1024Q9UPX6 916 aa21.6■■□□□ 1.05
SHROOM1-202ENST00000378676 PCDHA2Q9Y5H9 948 aa21.6■■□□□ 1.05
SHROOM1-202ENST00000378676 ZC3H4Q9UPT8 1303 aaKnown RBP21.59■■□□□ 1.05
SHROOM1-202ENST00000378676 KDM3AQ9Y4C1 1321 aa21.59■■□□□ 1.05
SHROOM1-202ENST00000378676 ZNF646O15015 1829 aaPredicted RBP21.59■■□□□ 1.05
SHROOM1-202ENST00000378676 SLC20A2Q08357 652 aa21.59■■□□□ 1.05
SHROOM1-202ENST00000378676 CCDC40Q4G0X9 1142 aa21.59■■□□□ 1.05
SHROOM1-202ENST00000378676 APOBEC3HQ6NTF7 200 aaKnown RBP21.59■■□□□ 1.05
SHROOM1-202ENST00000378676 FOXR2Q6PJQ5 311 aa21.59■■□□□ 1.05
SHROOM1-202ENST00000378676 FAM71BQ8TC56 605 aa21.59■■□□□ 1.05
SHROOM1-202ENST00000378676 GDAP1L1Q96MZ0 367 aa21.59■■□□□ 1.05
SHROOM1-202ENST00000378676 NOL4O94818 638 aa21.59■■□□□ 1.05
SHROOM1-202ENST00000378676 TRIM37O94972 964 aa21.59■■□□□ 1.05
SHROOM1-202ENST00000378676 STAT3P40763 770 aa21.59■■□□□ 1.05
SHROOM1-202ENST00000378676 FKBP3Q00688 224 aaKnown RBP21.59■■□□□ 1.05
SHROOM1-202ENST00000378676 APBA1Q02410 837 aa21.59■■□□□ 1.05
Retrieved 100 of 20,778 RNA–protein pairs in 23.3 ms