RNA–Protein interactions for RNA: ENST00000374876.4

CCDC40-202, Transcript of coiled-coil domain containing 40, humanhuman

TSL 1 (best) BASIC

Gene CCDC40, Length 2,010 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-202ENST00000374876 ARID3AQ99856 593 aa17.45■□□□□ 0.38
CCDC40-202ENST00000374876 A0A1B0GTH6 734 aa17.44■□□□□ 0.38
CCDC40-202ENST00000374876 PPP1R3GB7ZBB8 358 aa17.44■□□□□ 0.38
CCDC40-202ENST00000374876 ARHGAP6O43182 974 aa17.44■□□□□ 0.38
CCDC40-202ENST00000374876 GCLCP48506 637 aaPredicted RBP17.44■□□□□ 0.38
CCDC40-202ENST00000374876 IKQ13123 557 aaPredicted RBP17.44■□□□□ 0.38
CCDC40-202ENST00000374876 FCHSD1Q86WN1 690 aa17.44■□□□□ 0.38
CCDC40-202ENST00000374876 CD99L2Q8TCZ2 262 aa17.44■□□□□ 0.38
CCDC40-202ENST00000374876 BAG1Q99933 345 aaPredicted RBP17.44■□□□□ 0.38
CCDC40-202ENST00000374876 SLF1Q9BQI6 1058 aa17.44■□□□□ 0.38
CCDC40-202ENST00000374876 SPZ1Q9BXG8 430 aa17.44■□□□□ 0.38
CCDC40-202ENST00000374876 ARHGAP39Q9C0H5 1083 aa17.44■□□□□ 0.38
CCDC40-202ENST00000374876 BTBD7Q9P203 1132 aa17.44■□□□□ 0.38
CCDC40-202ENST00000374876 RLFQ13129 1914 aa17.44■□□□□ 0.38
CCDC40-202ENST00000374876 ZSCAN12O43309 604 aa17.43■□□□□ 0.38
CCDC40-202ENST00000374876 CNMDO75829 334 aa17.43■□□□□ 0.38
CCDC40-202ENST00000374876 SLC16A2P36021 539 aa17.43■□□□□ 0.38
CCDC40-202ENST00000374876 STAT6P42226 847 aa17.43■□□□□ 0.38
CCDC40-202ENST00000374876 INF2Q27J81 1249 aa17.43■□□□□ 0.38
CCDC40-202ENST00000374876 SYT10Q6XYQ8 523 aa17.43■□□□□ 0.38
CCDC40-202ENST00000374876 CCDC12Q8WUD4 166 aaPredicted RBP17.43■□□□□ 0.38
CCDC40-202ENST00000374876 DCAF4Q8WV16 495 aa17.43■□□□□ 0.38
CCDC40-202ENST00000374876 CTAGE1Q96RT6 745 aa17.43■□□□□ 0.38
CCDC40-202ENST00000374876 RMND1Q9NWS8 449 aa17.43■□□□□ 0.38
CCDC40-202ENST00000374876 FEM1BQ9UK73 627 aa17.43■□□□□ 0.38
CCDC40-202ENST00000374876 PPP1R9AQ9ULJ8 1098 aa17.43■□□□□ 0.38
CCDC40-202ENST00000374876 SNHG28P0DPA3 235 aa17.43■□□□□ 0.38
CCDC40-202ENST00000374876 CTGFP29279 349 aa17.43■□□□□ 0.38
CCDC40-202ENST00000374876 PRPF38AQ8NAV1 312 aaKnown RBP17.43■□□□□ 0.38
CCDC40-202ENST00000374876 RASSF8Q8NHQ8 419 aa17.43■□□□□ 0.38
CCDC40-202ENST00000374876 CCDC94Q9BW85 323 aaPredicted RBP17.43■□□□□ 0.38
CCDC40-202ENST00000374876 CPVLQ9H3G5 476 aa17.43■□□□□ 0.38
CCDC40-202ENST00000374876 CDC25AP30304 524 aa17.42■□□□□ 0.38
CCDC40-202ENST00000374876 STAT2P52630 851 aa17.42■□□□□ 0.38
CCDC40-202ENST00000374876 NAPAP54920 295 aa17.42■□□□□ 0.38
CCDC40-202ENST00000374876 ADKP55263 362 aaKnown RBP17.42■□□□□ 0.38
CCDC40-202ENST00000374876 SNAP25P60880 206 aa17.42■□□□□ 0.38
CCDC40-202ENST00000374876 LACTBP83111 547 aaPredicted RBP17.42■□□□□ 0.38
CCDC40-202ENST00000374876 FAM110CQ1W6H9 321 aa17.42■□□□□ 0.38
CCDC40-202ENST00000374876 CDKAL1Q5VV42 579 aa17.42■□□□□ 0.38
CCDC40-202ENST00000374876 RRAGBQ5VZM2 374 aa17.42■□□□□ 0.38
CCDC40-202ENST00000374876 LBX2Q6XYB7 198 aa17.42■□□□□ 0.38
CCDC40-202ENST00000374876 TMEM139Q8IV31 216 aa17.42■□□□□ 0.38
CCDC40-202ENST00000374876 TC2NQ8N9U0 490 aa17.42■□□□□ 0.38
CCDC40-202ENST00000374876 GPRC5AQ8NFJ5 357 aa17.42■□□□□ 0.38
CCDC40-202ENST00000374876 RRP36Q96EU6 259 aaKnown RBP17.42■□□□□ 0.38
CCDC40-202ENST00000374876 MTRQ99707 1265 aa17.42■□□□□ 0.38
CCDC40-202ENST00000374876 SEC63Q9UGP8 760 aaKnown RBP17.42■□□□□ 0.38
CCDC40-202ENST00000374876 CTNND2Q9UQB3 1225 aa17.42■□□□□ 0.38
CCDC40-202ENST00000374876 LAD1O00515 517 aa17.42■□□□□ 0.38
CCDC40-202ENST00000374876 VWA5AO00534 786 aa17.42■□□□□ 0.38
CCDC40-202ENST00000374876 STX10O60499 249 aa17.42■□□□□ 0.38
CCDC40-202ENST00000374876 ERVK-9P63128 1117 aa17.42■□□□□ 0.38
CCDC40-202ENST00000374876 ERVK-24P63145 666 aa17.42■□□□□ 0.38
CCDC40-202ENST00000374876 ZNF543Q08ER8 600 aa17.42■□□□□ 0.38
CCDC40-202ENST00000374876 PLS1Q14651 629 aa17.42■□□□□ 0.38
CCDC40-202ENST00000374876 KARSQ15046 597 aaKnown RBP17.42■□□□□ 0.38
CCDC40-202ENST00000374876 FILIP1LQ4L180 1135 aa17.42■□□□□ 0.38
CCDC40-202ENST00000374876 UBA5Q9GZZ9 404 aa17.42■□□□□ 0.38
CCDC40-202ENST00000374876 ZMYND12Q9H0C1 365 aa17.42■□□□□ 0.38
CCDC40-202ENST00000374876 DISC1Q9NRI5 854 aa17.42■□□□□ 0.38
CCDC40-202ENST00000374876 ZNF215Q9UL58 517 aaPredicted RBP17.42■□□□□ 0.38
CCDC40-202ENST00000374876 ADAMTS5Q9UNA0 930 aa17.42■□□□□ 0.38
CCDC40-202ENST00000374876 RABGAP1Q9Y3P9 1069 aa17.42■□□□□ 0.38
CCDC40-202ENST00000374876 PARP14Q460N5 1801 aa17.41■□□□□ 0.38
CCDC40-202ENST00000374876 CHURC1Q8WUH1 139 aa17.41■□□□□ 0.38
CCDC40-202ENST00000374876 C6orf50Q9HD87 102 aa17.41■□□□□ 0.38
CCDC40-202ENST00000374876 MORF4L1Q9UBU8 362 aa17.41■□□□□ 0.38
CCDC40-202ENST00000374876 SLU7O95391 586 aaKnown RBP17.4■□□□□ 0.38
CCDC40-202ENST00000374876 RPN1P04843 607 aaKnown RBP17.4■□□□□ 0.38
CCDC40-202ENST00000374876 GNA11P29992 359 aa17.4■□□□□ 0.38
CCDC40-202ENST00000374876 UBA7P41226 1012 aa17.4■□□□□ 0.38
CCDC40-202ENST00000374876 ETF1P62495 437 aaKnown RBP17.4■□□□□ 0.38
CCDC40-202ENST00000374876 TMEM132BQ14DG7 1078 aa17.4■□□□□ 0.38
CCDC40-202ENST00000374876 ZNF658Q5TYW1 1059 aaPredicted RBP17.4■□□□□ 0.38
CCDC40-202ENST00000374876 APTXQ7Z2E3 356 aaKnown RBP17.4■□□□□ 0.38
CCDC40-202ENST00000374876 KRT25Q7Z3Z0 450 aa17.4■□□□□ 0.38
CCDC40-202ENST00000374876 ERO1AQ96HE7 468 aa17.4■□□□□ 0.38
CCDC40-202ENST00000374876 TMEM60Q9H2L4 133 aa17.4■□□□□ 0.38
CCDC40-202ENST00000374876 PRDM10Q9NQV6 1147 aa17.4■□□□□ 0.38
CCDC40-202ENST00000374876 RWDD2AQ9UIY3 292 aa17.4■□□□□ 0.38
CCDC40-202ENST00000374876 PRR12Q9ULL5 1215 aa17.4■□□□□ 0.38
CCDC40-202ENST00000374876 MYPNQ86TC9 1320 aa17.4■□□□□ 0.38
CCDC40-202ENST00000374876 ZSWIM8A7E2V4 1837 aa17.4■□□□□ 0.38
CCDC40-202ENST00000374876 TEX33O43247 280 aa17.4■□□□□ 0.38
CCDC40-202ENST00000374876 SMARCA1P28370 1054 aa17.4■□□□□ 0.38
CCDC40-202ENST00000374876 PSMC4P43686 418 aa17.4■□□□□ 0.38
CCDC40-202ENST00000374876 NAA30Q147X3 362 aaPredicted RBP17.4■□□□□ 0.38
CCDC40-202ENST00000374876 PPFIBP1Q86W92 1011 aa17.4■□□□□ 0.38
CCDC40-202ENST00000374876 CPXCR1Q8N123 301 aa17.4■□□□□ 0.38
CCDC40-202ENST00000374876 GTF3C2Q8WUA4 911 aaPredicted RBP17.4■□□□□ 0.38
CCDC40-202ENST00000374876 PORCNQ9H237 461 aa17.4■□□□□ 0.38
CCDC40-202ENST00000374876 ADD3Q9UEY8 706 aaKnown RBP17.4■□□□□ 0.38
CCDC40-202ENST00000374876 PPP2R2CQ9Y2T4 447 aa17.4■□□□□ 0.38
CCDC40-202ENST00000374876 SMCO2A6NFE2 343 aa17.39■□□□□ 0.37
CCDC40-202ENST00000374876 AKR1B15C9JRZ8 316 aaPredicted RBP17.39■□□□□ 0.37
CCDC40-202ENST00000374876 PRPHP41219 470 aa17.39■□□□□ 0.37
CCDC40-202ENST00000374876 PAK1Q13153 545 aa17.39■□□□□ 0.37
CCDC40-202ENST00000374876 KIF22Q14807 665 aa17.39■□□□□ 0.37
CCDC40-202ENST00000374876 FAM160B2Q86V87 743 aa17.39■□□□□ 0.37
Retrieved 100 of 20,778 RNA–protein pairs in 25.3 ms