RNA–Protein interactions for RNA: ENST00000358808.6

CLIP1-202, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene CLIP1, Length 5,880 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-202ENST00000358808 ICA1Q05084 483 aa11.04□□□□□ -0.64
CLIP1-202ENST00000358808 TSC1Q92574 1164 aa11.04□□□□□ -0.64
CLIP1-202ENST00000358808 COG4Q9H9E3 785 aa11.04□□□□□ -0.64
CLIP1-202ENST00000358808 ARMCX3Q9UH62 379 aaPredicted RBP11.04□□□□□ -0.64
CLIP1-202ENST00000358808 AGLP35573 1532 aa11.04□□□□□ -0.64
CLIP1-202ENST00000358808 PASKQ96RG2 1323 aa11.04□□□□□ -0.64
CLIP1-202ENST00000358808 EIF3CLB5ME19 914 aaKnown RBP11.04□□□□□ -0.64
CLIP1-202ENST00000358808 EFCAB14O75071 495 aa11.04□□□□□ -0.64
CLIP1-202ENST00000358808 TRPA1O75762 1119 aa11.04□□□□□ -0.64
CLIP1-202ENST00000358808 EEF1DP29692 281 aaKnown RBP11.04□□□□□ -0.64
CLIP1-202ENST00000358808 IL13P35225 146 aa11.04□□□□□ -0.64
CLIP1-202ENST00000358808 PPP2R5EQ16537 467 aa11.04□□□□□ -0.64
CLIP1-202ENST00000358808 FRA10AC1Q70Z53 315 aa11.04□□□□□ -0.64
CLIP1-202ENST00000358808 GIPC2Q8TF65 315 aa11.04□□□□□ -0.64
CLIP1-202ENST00000358808 CACTINQ8WUQ7 758 aaKnown RBP11.04□□□□□ -0.64
CLIP1-202ENST00000358808 INTS4Q96HW7 963 aaKnown RBP11.04□□□□□ -0.64
CLIP1-202ENST00000358808 EIF3CQ99613 913 aaKnown RBP11.04□□□□□ -0.64
CLIP1-202ENST00000358808 PCDHA12Q9UN75 941 aa11.04□□□□□ -0.64
CLIP1-202ENST00000358808 HLA-DPA1P20036 260 aa11.03□□□□□ -0.64
CLIP1-202ENST00000358808 POLR2FP61218 127 aaKnown RBP11.03□□□□□ -0.64
CLIP1-202ENST00000358808 PPARAQ07869 468 aa11.03□□□□□ -0.64
CLIP1-202ENST00000358808 PPP2R5BQ15173 497 aa11.03□□□□□ -0.64
CLIP1-202ENST00000358808 KRT40Q6A162 431 aa11.03□□□□□ -0.64
CLIP1-202ENST00000358808 NLGN1Q8N2Q7 840 aa11.03□□□□□ -0.64
CLIP1-202ENST00000358808 NCLNQ969V3 563 aa11.03□□□□□ -0.64
CLIP1-202ENST00000358808 SUCLG2Q96I99 432 aa11.03□□□□□ -0.64
CLIP1-202ENST00000358808 TESK2Q96S53 571 aa11.03□□□□□ -0.64
CLIP1-202ENST00000358808 SRPK1Q96SB4 655 aaKnown RBP11.03□□□□□ -0.64
CLIP1-202ENST00000358808 LLPHQ9BRT6 129 aaKnown RBP11.03□□□□□ -0.64
CLIP1-202ENST00000358808 INPP5FQ9Y2H2 1132 aa11.03□□□□□ -0.64
CLIP1-202ENST00000358808 SPHKAPQ2M3C7 1700 aa11.03□□□□□ -0.64
CLIP1-202ENST00000358808 HNRNPDLO14979 420 aaKnown RBP11.03□□□□□ -0.64
CLIP1-202ENST00000358808 GNGT1P63211 74 aa11.03□□□□□ -0.64
CLIP1-202ENST00000358808 RASIP1Q5U651 963 aa11.03□□□□□ -0.64
CLIP1-202ENST00000358808 TTC19Q6DKK2 380 aaPredicted RBP11.03□□□□□ -0.64
CLIP1-202ENST00000358808 EFHD1Q9BUP0 239 aa11.03□□□□□ -0.64
CLIP1-202ENST00000358808 ABCA6Q8N139 1617 aa11.03□□□□□ -0.64
CLIP1-202ENST00000358808 KCNJ18B7U540 433 aa11.03□□□□□ -0.64
CLIP1-202ENST00000358808 TMEM232C9JQI7 657 aa11.03□□□□□ -0.64
CLIP1-202ENST00000358808 KCNJ12Q14500 433 aa11.03□□□□□ -0.64
CLIP1-202ENST00000358808 ELF2Q15723 593 aa11.03□□□□□ -0.64
CLIP1-202ENST00000358808 FAM196AQ6ZSG2 479 aa11.03□□□□□ -0.64
CLIP1-202ENST00000358808 ZBTB40Q9NUA8 1239 aa11.03□□□□□ -0.64
CLIP1-202ENST00000358808 G3BP2Q9UN86 482 aaKnown RBP11.03□□□□□ -0.64
CLIP1-202ENST00000358808 ROBO2Q9HCK4 1378 aa11.03□□□□□ -0.64
CLIP1-202ENST00000358808 HSP90AA5PQ58FG0 334 aa11.03□□□□□ -0.64
CLIP1-202ENST00000358808 ATG16L1Q676U5 607 aa11.03□□□□□ -0.64
CLIP1-202ENST00000358808 HYOU1Q9Y4L1 999 aa11.03□□□□□ -0.64
CLIP1-202ENST00000358808 SAR1BQ9Y6B6 198 aa11.03□□□□□ -0.64
CLIP1-202ENST00000358808 WDR17Q8IZU2 1322 aa11.03□□□□□ -0.64
CLIP1-202ENST00000358808 GOLGA8SH3BPF8 625 aa11.02□□□□□ -0.64
CLIP1-202ENST00000358808 OAS2P29728 719 aaKnown RBP11.02□□□□□ -0.64
CLIP1-202ENST00000358808 ESRRGP62508 458 aa11.02□□□□□ -0.64
CLIP1-202ENST00000358808 TRIM58Q8NG06 486 aa11.02□□□□□ -0.64
CLIP1-202ENST00000358808 CFAP36Q96G28 342 aa11.02□□□□□ -0.64
CLIP1-202ENST00000358808 JPH2Q9BR39 696 aaPredicted RBP11.02□□□□□ -0.64
CLIP1-202ENST00000358808 TRIM45Q9H8W5 580 aaPredicted RBP11.02□□□□□ -0.64
CLIP1-202ENST00000358808 SERTAD1Q9UHV2 236 aa11.02□□□□□ -0.64
CLIP1-202ENST00000358808 HADHAP40939 763 aa11.02□□□□□ -0.64
CLIP1-202ENST00000358808 DYNLT1P63172 113 aa11.02□□□□□ -0.64
CLIP1-202ENST00000358808 PNOCQ13519 176 aa11.02□□□□□ -0.64
CLIP1-202ENST00000358808 TBC1D10BQ4KMP7 808 aaPredicted RBP11.02□□□□□ -0.64
CLIP1-202ENST00000358808 DSTYKQ6XUX3 929 aa11.02□□□□□ -0.64
CLIP1-202ENST00000358808 SYTL2Q9HCH5 934 aa11.02□□□□□ -0.64
CLIP1-202ENST00000358808 COL4A3BPQ9Y5P4 624 aa11.02□□□□□ -0.64
CLIP1-202ENST00000358808 INO80Q9ULG1 1556 aaPredicted RBP11.02□□□□□ -0.64
CLIP1-202ENST00000358808 PPEF1O14829 653 aaPredicted RBP11.02□□□□□ -0.65
CLIP1-202ENST00000358808 TOM1L1O75674 476 aa11.02□□□□□ -0.65
CLIP1-202ENST00000358808 MYL3P08590 195 aa11.02□□□□□ -0.65
CLIP1-202ENST00000358808 GCKP35557 465 aa11.02□□□□□ -0.65
CLIP1-202ENST00000358808 CAPRIN1Q14444 709 aaKnown RBP11.02□□□□□ -0.65
CLIP1-202ENST00000358808 DARS2Q6PI48 645 aaKnown RBP11.02□□□□□ -0.65
CLIP1-202ENST00000358808 CARD14Q9BXL6 1004 aa11.02□□□□□ -0.65
CLIP1-202ENST00000358808 TRIM4Q9C037 500 aa11.02□□□□□ -0.65
CLIP1-202ENST00000358808 ZC4H2Q9NQZ6 224 aa11.02□□□□□ -0.65
CLIP1-202ENST00000358808 ZNF212Q9UDV6 495 aa11.02□□□□□ -0.65
CLIP1-202ENST00000358808 GOLGA8KD6RF30 607 aa11.02□□□□□ -0.65
CLIP1-202ENST00000358808 MCF2LO15068 1137 aa11.02□□□□□ -0.65
CLIP1-202ENST00000358808 MORC3Q14149 939 aa11.02□□□□□ -0.65
CLIP1-202ENST00000358808 ZBTB18Q99592 522 aa11.02□□□□□ -0.65
CLIP1-202ENST00000358808 PIDD1Q9HB75 910 aa11.02□□□□□ -0.65
CLIP1-202ENST00000358808 LARSQ9P2J5 1176 aaKnown RBP11.02□□□□□ -0.65
CLIP1-202ENST00000358808 CAPN7Q9Y6W3 813 aa11.02□□□□□ -0.65
CLIP1-202ENST00000358808 ZAP70P43403 619 aa11.02□□□□□ -0.65
CLIP1-202ENST00000358808 ATP1A2P50993 1020 aa11.02□□□□□ -0.65
CLIP1-202ENST00000358808 BPIFB4P59827 614 aa11.02□□□□□ -0.65
CLIP1-202ENST00000358808 LMNB2Q03252 620 aa11.02□□□□□ -0.65
CLIP1-202ENST00000358808 ART3Q13508 389 aa11.02□□□□□ -0.65
CLIP1-202ENST00000358808 NAA35Q5VZE5 725 aa11.02□□□□□ -0.65
CLIP1-202ENST00000358808 USP19O94966 1318 aa11.02□□□□□ -0.65
CLIP1-202ENST00000358808 ANKARQ7Z5J8 1434 aa11.02□□□□□ -0.65
CLIP1-202ENST00000358808 TRAPPC10P48553 1259 aa11.01□□□□□ -0.65
CLIP1-202ENST00000358808 KCNA1Q09470 495 aa11.01□□□□□ -0.65
CLIP1-202ENST00000358808 FLOT2Q14254 428 aa11.01□□□□□ -0.65
CLIP1-202ENST00000358808 MESDQ14696 234 aa11.01□□□□□ -0.65
CLIP1-202ENST00000358808 DEPDC1BQ8WUY9 529 aa11.01□□□□□ -0.65
CLIP1-202ENST00000358808 ZNF496Q96IT1 587 aaPredicted RBP11.01□□□□□ -0.65
CLIP1-202ENST00000358808 NT5C1BQ96P26 610 aa11.01□□□□□ -0.65
CLIP1-202ENST00000358808 ZNF215Q9UL58 517 aaPredicted RBP11.01□□□□□ -0.65
CLIP1-202ENST00000358808 KRT1P04264 644 aa11.01□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 26.7 ms