RNA–Protein interactions for RNA: ENST00000356352.6

UPF2-201, Transcript of UPF2, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF2, Length 5,569 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF2-201ENST00000356352 ARHGAP27Q6ZUM4 889 aa7□□□□□ -1.29
UPF2-201ENST00000356352 FAM160B2Q86V87 743 aa7□□□□□ -1.29
UPF2-201ENST00000356352 LRRC8AQ8IWT6 810 aa7□□□□□ -1.29
UPF2-201ENST00000356352 FBXO41Q8TF61 875 aa7□□□□□ -1.29
UPF2-201ENST00000356352 USP28Q96RU2 1077 aa7□□□□□ -1.29
UPF2-201ENST00000356352 DAAM1Q9Y4D1 1078 aa7□□□□□ -1.29
UPF2-201ENST00000356352 DNMT1P26358 1616 aaKnown RBP7□□□□□ -1.29
UPF2-201ENST00000356352 SYNJ2BP-COX16A0A087WUM0 186 aa7□□□□□ -1.29
UPF2-201ENST00000356352 TMEM247A6NEH6 219 aa7□□□□□ -1.29
UPF2-201ENST00000356352 PAMP19021 973 aa7□□□□□ -1.29
UPF2-201ENST00000356352 GYG1P46976 350 aa7□□□□□ -1.29
UPF2-201ENST00000356352 MESDQ14696 234 aa7□□□□□ -1.29
UPF2-201ENST00000356352 RNF123Q5XPI4 1314 aa7□□□□□ -1.29
UPF2-201ENST00000356352 MAGOHBQ96A72 148 aaKnown RBP7□□□□□ -1.29
UPF2-201ENST00000356352 UIMC1Q96RL1 719 aa7□□□□□ -1.29
UPF2-201ENST00000356352 KIFC3Q9BVG8 833 aa7□□□□□ -1.29
UPF2-201ENST00000356352 LRRC4Q9HBW1 653 aa7□□□□□ -1.29
UPF2-201ENST00000356352 SMYD2Q9NRG4 433 aa7□□□□□ -1.29
UPF2-201ENST00000356352 COX16Q9P0S2 106 aa7□□□□□ -1.29
UPF2-201ENST00000356352 LRRD1A4D1F6 860 aa7□□□□□ -1.29
UPF2-201ENST00000356352 SPDYE2BA6NHP3 402 aa7□□□□□ -1.29
UPF2-201ENST00000356352 SEC24BO95487 1268 aa7□□□□□ -1.29
UPF2-201ENST00000356352 SPDYE6P0CI01 402 aa7□□□□□ -1.29
UPF2-201ENST00000356352 ATG16L1Q676U5 607 aa7□□□□□ -1.29
UPF2-201ENST00000356352 TRIM68Q6AZZ1 485 aa7□□□□□ -1.29
UPF2-201ENST00000356352 SLFN12LQ6IEE8 588 aa7□□□□□ -1.29
UPF2-201ENST00000356352 RASEFQ8IZ41 740 aa7□□□□□ -1.29
UPF2-201ENST00000356352 ZBTB9Q96C00 473 aa7□□□□□ -1.29
UPF2-201ENST00000356352 NRBF2Q96F24 287 aa7□□□□□ -1.29
UPF2-201ENST00000356352 THAP9Q9H5L6 903 aa7□□□□□ -1.29
UPF2-201ENST00000356352 FAM96AQ9H5X1 160 aa7□□□□□ -1.29
UPF2-201ENST00000356352 FGFR1OP2Q9NVK5 253 aa7□□□□□ -1.29
UPF2-201ENST00000356352 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP7□□□□□ -1.294e-8■■■■□ 23.5
UPF2-201ENST00000356352 ZNF212Q9UDV6 495 aa7□□□□□ -1.29
UPF2-201ENST00000356352 CDC23Q9UJX2 597 aa7□□□□□ -1.29
UPF2-201ENST00000356352 PCDHA7Q9UN72 937 aa7□□□□□ -1.29
UPF2-201ENST00000356352 POC1B-GALNT4F8VUJ3 575 aa6.99□□□□□ -1.29
UPF2-201ENST00000356352 PRPSAP2O60256 369 aa6.99□□□□□ -1.29
UPF2-201ENST00000356352 TAC1P20366 129 aa6.99□□□□□ -1.29
UPF2-201ENST00000356352 GUCY2DQ02846 1103 aa6.99□□□□□ -1.29
UPF2-201ENST00000356352 DEUP1Q05D60 604 aa6.99□□□□□ -1.29
UPF2-201ENST00000356352 KIAA1841Q6NSI8 718 aa6.99□□□□□ -1.29
UPF2-201ENST00000356352 DARS2Q6PI48 645 aaKnown RBP6.99□□□□□ -1.29
UPF2-201ENST00000356352 KIAA0825Q8IV33 1275 aa6.99□□□□□ -1.29
UPF2-201ENST00000356352 DNAAF3Q8N9W5 541 aa6.99□□□□□ -1.29
UPF2-201ENST00000356352 FBXL13Q8NEE6 735 aa6.99□□□□□ -1.29
UPF2-201ENST00000356352 PI4K2BQ8TCG2 481 aa6.99□□□□□ -1.29
UPF2-201ENST00000356352 MICAL1Q8TDZ2 1067 aa6.99□□□□□ -1.29
UPF2-201ENST00000356352 SDR42E1Q8WUS8 393 aa6.99□□□□□ -1.29
UPF2-201ENST00000356352 GJA10Q969M2 543 aa6.99□□□□□ -1.29
UPF2-201ENST00000356352 TACO1Q9BSH4 297 aaKnown RBP6.99□□□□□ -1.29
UPF2-201ENST00000356352 SCINQ9Y6U3 715 aa6.99□□□□□ -1.29
UPF2-201ENST00000356352 ABCC2Q92887 1545 aa6.99□□□□□ -1.29
UPF2-201ENST00000356352 YEATS2Q9ULM3 1422 aa6.99□□□□□ -1.29
UPF2-201ENST00000356352 RPAP1Q9BWH6 1393 aaPredicted RBP6.99□□□□□ -1.29
UPF2-201ENST00000356352 PYGBP11216 843 aa6.99□□□□□ -1.29
UPF2-201ENST00000356352 BCAMP50895 628 aa6.99□□□□□ -1.29
UPF2-201ENST00000356352 EIF3BP55884 814 aaKnown RBP6.99□□□□□ -1.29
UPF2-201ENST00000356352 IL1RL1Q01638 556 aa6.99□□□□□ -1.29
UPF2-201ENST00000356352 RASSF7Q02833 373 aa6.99□□□□□ -1.29
UPF2-201ENST00000356352 CAPN12Q6ZSI9 719 aa6.99□□□□□ -1.29
UPF2-201ENST00000356352 KCTD6Q8NC69 237 aa6.99□□□□□ -1.29
UPF2-201ENST00000356352 MCUQ8NE86 351 aa6.99□□□□□ -1.29
UPF2-201ENST00000356352 BCAS4Q8TDM0 211 aa6.99□□□□□ -1.29
UPF2-201ENST00000356352 TCP11Q8WWU5 503 aa6.99□□□□□ -1.29
UPF2-201ENST00000356352 APOL6Q9BWW8 343 aa6.99□□□□□ -1.29
UPF2-201ENST00000356352 TRIM4Q9C037 500 aa6.99□□□□□ -1.29
UPF2-201ENST00000356352 POLR3EQ9NVU0 708 aa6.99□□□□□ -1.29
UPF2-201ENST00000356352 SLAIN2Q9P270 581 aa6.99□□□□□ -1.29
UPF2-201ENST00000356352 ANGPTL2Q9UKU9 493 aa6.99□□□□□ -1.29
UPF2-201ENST00000356352 A0A0D9SFI3 127 aa6.99□□□□□ -1.29
UPF2-201ENST00000356352 IQANK1A0A1B0GTG1 560 aa6.99□□□□□ -1.29
UPF2-201ENST00000356352 PDIA3P30101 505 aaKnown RBP6.99□□□□□ -1.29
UPF2-201ENST00000356352 SCNN1DP51172 638 aa6.99□□□□□ -1.29
UPF2-201ENST00000356352 HSPA2P54652 639 aa6.99□□□□□ -1.29
UPF2-201ENST00000356352 EHHADHQ08426 723 aa6.99□□□□□ -1.29
UPF2-201ENST00000356352 CC2D2BQ6DHV5 1058 aa6.99□□□□□ -1.29
UPF2-201ENST00000356352 NOP9Q86U38 636 aaKnown RBP6.99□□□□□ -1.29
UPF2-201ENST00000356352 CCNYQ8ND76 341 aa6.99□□□□□ -1.29
UPF2-201ENST00000356352 RNF139Q8WU17 664 aa6.99□□□□□ -1.29
UPF2-201ENST00000356352 TRIM45Q9H8W5 580 aaPredicted RBP6.99□□□□□ -1.29
UPF2-201ENST00000356352 FANCLQ9NW38 375 aa6.99□□□□□ -1.29
UPF2-201ENST00000356352 SUCLA2Q9P2R7 463 aaPredicted RBP6.99□□□□□ -1.29
UPF2-201ENST00000356352 RWDD2AQ9UIY3 292 aa6.99□□□□□ -1.29
UPF2-201ENST00000356352 ADAMTS12P58397 1594 aa6.99□□□□□ -1.29
UPF2-201ENST00000356352 INO80B-WBP1J3KQ70 363 aa6.99□□□□□ -1.29
UPF2-201ENST00000356352 BBOX1O75936 387 aa6.99□□□□□ -1.29
UPF2-201ENST00000356352 LDHAP00338 332 aaKnown RBP6.99□□□□□ -1.29
UPF2-201ENST00000356352 APOEP02649 317 aa6.99□□□□□ -1.29
UPF2-201ENST00000356352 MT-ND3P03897 115 aa6.99□□□□□ -1.29
UPF2-201ENST00000356352 GOLGA8HP0CJ92 632 aa6.99□□□□□ -1.29
UPF2-201ENST00000356352 STAT2P52630 851 aa6.99□□□□□ -1.29
UPF2-201ENST00000356352 SLC39A14Q15043 492 aa6.99□□□□□ -1.29
UPF2-201ENST00000356352 ZBTB18Q99592 522 aa6.99□□□□□ -1.29
UPF2-201ENST00000356352 DESI2Q9BSY9 194 aa6.99□□□□□ -1.29
UPF2-201ENST00000356352 TEX12Q9BXU0 123 aa6.99□□□□□ -1.29
UPF2-201ENST00000356352 INO80BQ9C086 356 aaPredicted RBP6.99□□□□□ -1.29
UPF2-201ENST00000356352 ATG3Q9NT62 314 aa6.99□□□□□ -1.29
UPF2-201ENST00000356352 IRAK4Q9NWZ3 460 aa6.99□□□□□ -1.29
UPF2-201ENST00000356352 PNMA3Q9UL41 463 aa6.99□□□□□ -1.29
Retrieved 100 of 20,778 RNA–protein pairs in 23.8 ms