RNA–Protein interactions for RNA: ENST00000355766.5

VPS13A-201, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 3

Gene VPS13A, Length 753 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-201ENST00000355766 FAM161BQ96MY7 647 aa8.37□□□□□ -1.07
VPS13A-201ENST00000355766 BICC1Q9H694 974 aaKnown RBP8.37□□□□□ -1.07
VPS13A-201ENST00000355766 GPR108Q9NPR9 543 aa8.37□□□□□ -1.07
VPS13A-201ENST00000355766 SH2B1Q9NRF2 756 aaPredicted RBP8.37□□□□□ -1.07
VPS13A-201ENST00000355766 CNTN3Q9P232 1028 aa8.37□□□□□ -1.07
VPS13A-201ENST00000355766 SLC45A1Q9Y2W3 748 aa8.37□□□□□ -1.07
VPS13A-201ENST00000355766 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP8.37□□□□□ -1.07
VPS13A-201ENST00000355766 MGAMO43451 1857 aa8.36□□□□□ -1.07
VPS13A-201ENST00000355766 RFX7Q2KHR2 1363 aa8.36□□□□□ -1.07
VPS13A-201ENST00000355766 FSCN2O14926 492 aa8.36□□□□□ -1.07
VPS13A-201ENST00000355766 ERC2O15083 957 aa8.36□□□□□ -1.07
VPS13A-201ENST00000355766 CDC45O75419 566 aa8.36□□□□□ -1.07
VPS13A-201ENST00000355766 SURF6O75683 361 aaKnown RBP8.36□□□□□ -1.07
VPS13A-201ENST00000355766 EPHA1P21709 976 aa8.36□□□□□ -1.07
VPS13A-201ENST00000355766 PDE1AP54750 535 aa8.36□□□□□ -1.07
VPS13A-201ENST00000355766 APOBEC3HQ6NTF7 200 aaKnown RBP8.36□□□□□ -1.07
VPS13A-201ENST00000355766 LDHAL6AQ6ZMR3 332 aa8.36□□□□□ -1.07
VPS13A-201ENST00000355766 FASTKD5Q7L8L6 764 aaKnown RBP8.36□□□□□ -1.07
VPS13A-201ENST00000355766 CLASRPQ8N2M8 674 aaKnown RBP8.36□□□□□ -1.07
VPS13A-201ENST00000355766 MAFAQ8NHW3 353 aaPredicted RBP8.36□□□□□ -1.07
VPS13A-201ENST00000355766 SMCR8Q8TEV9 937 aaPredicted RBP8.36□□□□□ -1.07
VPS13A-201ENST00000355766 TBC1D22AQ8WUA7 517 aa8.36□□□□□ -1.07
VPS13A-201ENST00000355766 FAM151AQ8WW52 585 aa8.36□□□□□ -1.07
VPS13A-201ENST00000355766 COA7Q96BR5 231 aa8.36□□□□□ -1.07
VPS13A-201ENST00000355766 POP1Q99575 1024 aaKnown RBP8.36□□□□□ -1.07
VPS13A-201ENST00000355766 CNNM1Q9NRU3 951 aa8.36□□□□□ -1.07
VPS13A-201ENST00000355766 KANSL3Q9P2N6 904 aa8.36□□□□□ -1.07
VPS13A-201ENST00000355766 OGDHLQ9ULD0 1010 aa8.36□□□□□ -1.07
VPS13A-201ENST00000355766 EXOC6BQ9Y2D4 811 aa8.36□□□□□ -1.07
VPS13A-201ENST00000355766 MUC3AQ02505 3323 aa8.36□□□□□ -1.07
VPS13A-201ENST00000355766 ATRNL1Q5VV63 1379 aa8.35□□□□□ -1.07
VPS13A-201ENST00000355766 KRTAP9-6A0A140TA67 174 aa8.35□□□□□ -1.07
VPS13A-201ENST00000355766 COL6A1P12109 1028 aa8.35□□□□□ -1.07
VPS13A-201ENST00000355766 RFX5P48382 616 aaPredicted RBP8.35□□□□□ -1.07
VPS13A-201ENST00000355766 CHAF1AQ13111 956 aaPredicted RBP8.35□□□□□ -1.07
VPS13A-201ENST00000355766 FAM110CQ1W6H9 321 aa8.35□□□□□ -1.07
VPS13A-201ENST00000355766 CCDC57Q2TAC2 916 aa8.35□□□□□ -1.07
VPS13A-201ENST00000355766 TAF7LQ5H9L4 462 aa8.35□□□□□ -1.07
VPS13A-201ENST00000355766 ACAD11Q709F0 780 aa8.35□□□□□ -1.07
VPS13A-201ENST00000355766 ZNF438Q7Z4V0 828 aa8.35□□□□□ -1.07
VPS13A-201ENST00000355766 MRIQ9BWK5 157 aa8.35□□□□□ -1.07
VPS13A-201ENST00000355766 RAXQ9Y2V3 346 aa8.35□□□□□ -1.07
VPS13A-201ENST00000355766 PRUNE2Q8WUY3 3088 aa8.34□□□□□ -1.07
VPS13A-201ENST00000355766 DDX3YO15523 660 aaKnown RBP8.34□□□□□ -1.07
VPS13A-201ENST00000355766 GLRX3O76003 335 aaKnown RBP8.34□□□□□ -1.07
VPS13A-201ENST00000355766 PTPRAP18433 802 aa8.34□□□□□ -1.07
VPS13A-201ENST00000355766 IL15P40933 162 aaPredicted RBP8.34□□□□□ -1.07
VPS13A-201ENST00000355766 G3BP1Q13283 466 aaKnown RBP eCLIP8.34□□□□□ -1.07
VPS13A-201ENST00000355766 OS9Q13438 667 aaPredicted RBP8.34□□□□□ -1.07
VPS13A-201ENST00000355766 HHIPL2Q6UWX4 724 aa8.34□□□□□ -1.07
VPS13A-201ENST00000355766 LMBR1LQ6UX01 489 aa8.34□□□□□ -1.07
VPS13A-201ENST00000355766 GADL1Q6ZQY3 521 aa8.34□□□□□ -1.07
VPS13A-201ENST00000355766 KIAA1211Q6ZU35 1233 aa8.34□□□□□ -1.07
VPS13A-201ENST00000355766 SCYL3Q8IZE3 742 aa8.34□□□□□ -1.07
VPS13A-201ENST00000355766 ARMC10Q8N2F6 343 aa8.34□□□□□ -1.07
VPS13A-201ENST00000355766 ANKRD13CQ8N6S4 541 aa8.34□□□□□ -1.07
VPS13A-201ENST00000355766 HELQQ8TDG4 1101 aa8.34□□□□□ -1.07
VPS13A-201ENST00000355766 EDEM1Q92611 657 aa8.34□□□□□ -1.07
VPS13A-201ENST00000355766 TBC1D32Q96NH3 1257 aa8.34□□□□□ -1.07
VPS13A-201ENST00000355766 CDX2Q99626 313 aaPredicted RBP8.34□□□□□ -1.07
VPS13A-201ENST00000355766 ADAM19Q9H013 955 aa8.34□□□□□ -1.07
VPS13A-201ENST00000355766 SALL4Q9UJQ4 1053 aa8.34□□□□□ -1.07
VPS13A-201ENST00000355766 SUGT1Q9Y2Z0 365 aa8.34□□□□□ -1.07
VPS13A-201ENST00000355766 FRAT2O75474 233 aaPredicted RBP8.33□□□□□ -1.08
VPS13A-201ENST00000355766 GSPT1P15170 499 aaKnown RBP8.33□□□□□ -1.08
VPS13A-201ENST00000355766 PLA2G5P39877 138 aa8.33□□□□□ -1.08
VPS13A-201ENST00000355766 LRRC26Q2I0M4 334 aa8.33□□□□□ -1.08
VPS13A-201ENST00000355766 EPHA10Q5JZY3 1008 aa8.33□□□□□ -1.08
VPS13A-201ENST00000355766 MAP3K21Q5TCX8 1036 aa8.33□□□□□ -1.08
VPS13A-201ENST00000355766 XKR5Q6UX68 686 aa8.33□□□□□ -1.08
VPS13A-201ENST00000355766 FBXO33Q7Z6M2 555 aa8.33□□□□□ -1.08
VPS13A-201ENST00000355766 SKAP1Q86WV1 359 aa8.33□□□□□ -1.08
VPS13A-201ENST00000355766 VPS37DQ86XT2 251 aa8.33□□□□□ -1.08
VPS13A-201ENST00000355766 C1orf127Q8N9H9 656 aa8.33□□□□□ -1.08
VPS13A-201ENST00000355766 KLHL23Q8NBE8 558 aa8.33□□□□□ -1.08
VPS13A-201ENST00000355766 TRIB2Q92519 343 aa8.33□□□□□ -1.08
VPS13A-201ENST00000355766 KLHDC7BQ96G42 594 aa8.33□□□□□ -1.08
VPS13A-201ENST00000355766 PICK1Q9NRD5 415 aa8.33□□□□□ -1.08
VPS13A-201ENST00000355766 ECHDC1Q9NTX5 307 aa8.33□□□□□ -1.08
VPS13A-201ENST00000355766 AGTPBP1Q9UPW5 1226 aa8.33□□□□□ -1.08
VPS13A-201ENST00000355766 AFG3L2Q9Y4W6 797 aa8.33□□□□□ -1.08
VPS13A-201ENST00000355766 ZHX2Q9Y6X8 837 aa8.33□□□□□ -1.08
VPS13A-201ENST00000355766 MAST2Q6P0Q8 1798 aa8.33□□□□□ -1.08
VPS13A-201ENST00000355766 TTC28Q96AY4 2481 aa8.32□□□□□ -1.08
VPS13A-201ENST00000355766 CDH23Q9H251 3354 aa8.32□□□□□ -1.08
VPS13A-201ENST00000355766 HIP1O00291 1037 aa8.32□□□□□ -1.08
VPS13A-201ENST00000355766 ADAM11O75078 769 aa8.32□□□□□ -1.08
VPS13A-201ENST00000355766 REC8O95072 547 aa8.32□□□□□ -1.08
VPS13A-201ENST00000355766 ACPPP15309 386 aa8.32□□□□□ -1.08
VPS13A-201ENST00000355766 RBM25P49756 843 aaKnown RBP8.32□□□□□ -1.08
VPS13A-201ENST00000355766 DNM1Q05193 864 aaKnown RBP8.32□□□□□ -1.08
VPS13A-201ENST00000355766 TCP10Q12799 353 aa8.32□□□□□ -1.08
VPS13A-201ENST00000355766 NFIAQ12857 509 aa8.32□□□□□ -1.08
VPS13A-201ENST00000355766 DUOXA2Q1HG44 320 aa8.32□□□□□ -1.08
VPS13A-201ENST00000355766 CAVIN4Q5BKX8 364 aa8.32□□□□□ -1.08
VPS13A-201ENST00000355766 FAM117BQ6P1L5 589 aa8.32□□□□□ -1.08
VPS13A-201ENST00000355766 UBASH3BQ8TF42 649 aa8.32□□□□□ -1.08
VPS13A-201ENST00000355766 FOXD4L4Q8WXT5 416 aaPredicted RBP8.32□□□□□ -1.08
VPS13A-201ENST00000355766 STOML1Q9UBI4 398 aa8.32□□□□□ -1.08
VPS13A-201ENST00000355766 DAGLAQ9Y4D2 1042 aa8.32□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 16.5 ms