RNA–Protein interactions for RNA: ENST00000351842.8

USP4-202, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 1 (best) BASIC

Gene USP4, Length 3,222 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-202ENST00000351842 BANK1Q8NDB2 785 aa10.39□□□□□ -0.75
USP4-202ENST00000351842 CDK5RAP3Q96JB5 506 aa10.39□□□□□ -0.75
USP4-202ENST00000351842 SDF4Q9BRK5 362 aa10.39□□□□□ -0.75
USP4-202ENST00000351842 FLRT1Q9NZU1 646 aa10.39□□□□□ -0.75
USP4-202ENST00000351842 MYPNQ86TC9 1320 aa10.39□□□□□ -0.75
USP4-202ENST00000351842 UNCXA6NJT0 531 aa10.39□□□□□ -0.75
USP4-202ENST00000351842 ZBTB39O15060 712 aa10.39□□□□□ -0.75
USP4-202ENST00000351842 TRAK2O60296 914 aa10.39□□□□□ -0.75
USP4-202ENST00000351842 PTPREP23469 700 aa10.39□□□□□ -0.75
USP4-202ENST00000351842 MAPK4P31152 587 aa10.39□□□□□ -0.75
USP4-202ENST00000351842 FCGRTP55899 365 aa10.39□□□□□ -0.75
USP4-202ENST00000351842 CACNB1Q02641 598 aaPredicted RBP10.39□□□□□ -0.75
USP4-202ENST00000351842 TKFCQ3LXA3 575 aa10.39□□□□□ -0.75
USP4-202ENST00000351842 NLRX1Q86UT6 975 aa10.39□□□□□ -0.75
USP4-202ENST00000351842 GOLPH3LQ9H4A5 285 aa10.39□□□□□ -0.75
USP4-202ENST00000351842 MLXIPQ9HAP2 919 aa10.39□□□□□ -0.75
USP4-202ENST00000351842 EIF4ENIF1Q9NRA8 985 aaKnown RBP10.39□□□□□ -0.75
USP4-202ENST00000351842 LMBRD1Q9NUN5 540 aa10.39□□□□□ -0.75
USP4-202ENST00000351842 LRWD1Q9UFC0 647 aa10.39□□□□□ -0.75
USP4-202ENST00000351842 CEP131Q9UPN4 1083 aa10.39□□□□□ -0.75
USP4-202ENST00000351842 C11orf97A0A1B0GVM6 126 aaPredicted RBP10.39□□□□□ -0.75
USP4-202ENST00000351842 ALDH1A1P00352 501 aa10.39□□□□□ -0.75
USP4-202ENST00000351842 PTPAQ15257 358 aa10.39□□□□□ -0.75
USP4-202ENST00000351842 DAGLBQ8NCG7 672 aa10.39□□□□□ -0.75
USP4-202ENST00000351842 GPT2Q8TD30 523 aa10.39□□□□□ -0.75
USP4-202ENST00000351842 KCNG4Q8TDN1 519 aa10.39□□□□□ -0.75
USP4-202ENST00000351842 SNX29Q8TEQ0 813 aa10.39□□□□□ -0.75
USP4-202ENST00000351842 PIGOQ8TEQ8 1089 aa10.39□□□□□ -0.75
USP4-202ENST00000351842 GLT8D2Q9H1C3 349 aa10.39□□□□□ -0.75
USP4-202ENST00000351842 PFASO15067 1338 aa10.38□□□□□ -0.75
USP4-202ENST00000351842 TXNP10599 105 aaKnown RBP10.38□□□□□ -0.75
USP4-202ENST00000351842 TMEM266Q2M3C6 531 aa10.38□□□□□ -0.75
USP4-202ENST00000351842 JMYQ8N9B5 988 aa10.38□□□□□ -0.75
USP4-202ENST00000351842 POLR3EQ9NVU0 708 aa10.38□□□□□ -0.75
USP4-202ENST00000351842 RLFQ13129 1914 aa10.38□□□□□ -0.75
USP4-202ENST00000351842 NOP56O00567 594 aaKnown RBP10.38□□□□□ -0.75
USP4-202ENST00000351842 ARIH2O95376 493 aa10.38□□□□□ -0.75
USP4-202ENST00000351842 GGPS1O95749 300 aa10.38□□□□□ -0.75
USP4-202ENST00000351842 MAP2K2P36507 400 aa10.38□□□□□ -0.75
USP4-202ENST00000351842 LBX1P52954 281 aa10.38□□□□□ -0.75
USP4-202ENST00000351842 SP2Q02086 613 aa10.38□□□□□ -0.75
USP4-202ENST00000351842 SHC4Q6S5L8 630 aa10.38□□□□□ -0.75
USP4-202ENST00000351842 FAM133AQ8N9E0 248 aa10.38□□□□□ -0.75
USP4-202ENST00000351842 HAS1Q92839 578 aa10.38□□□□□ -0.75
USP4-202ENST00000351842 ZNF668Q96K58 619 aaPredicted RBP10.38□□□□□ -0.75
USP4-202ENST00000351842 POTEB3A0JP26 581 aa10.37□□□□□ -0.75
USP4-202ENST00000351842 POTEFA5A3E0 1075 aa10.37□□□□□ -0.75
USP4-202ENST00000351842 FOXN1O15353 648 aa10.37□□□□□ -0.75
USP4-202ENST00000351842 RGS20O76081 388 aa10.37□□□□□ -0.75
USP4-202ENST00000351842 PFKFB1P16118 471 aa10.37□□□□□ -0.75
USP4-202ENST00000351842 IBSPP21815 317 aaPredicted RBP10.37□□□□□ -0.75
USP4-202ENST00000351842 CCT6AP40227 531 aaKnown RBP10.37□□□□□ -0.75
USP4-202ENST00000351842 POTEBQ6S5H4 581 aa10.37□□□□□ -0.75
USP4-202ENST00000351842 POTEGQ6S5H5 508 aa10.37□□□□□ -0.75
USP4-202ENST00000351842 VSIG10LQ86VR7 867 aa10.37□□□□□ -0.75
USP4-202ENST00000351842 MAML3Q96JK9 1138 aa10.37□□□□□ -0.75
USP4-202ENST00000351842 CCDC43Q96MW1 224 aaKnown RBP10.37□□□□□ -0.75
USP4-202ENST00000351842 PPP1R16BQ96T49 567 aa10.37□□□□□ -0.75
USP4-202ENST00000351842 MXRA8Q9BRK3 442 aa10.37□□□□□ -0.75
USP4-202ENST00000351842 BLZF1Q9H2G9 400 aa10.37□□□□□ -0.75
USP4-202ENST00000351842 CDKN2AIPQ9NXV6 580 aaPredicted RBP10.37□□□□□ -0.75
USP4-202ENST00000351842 ZSWIM8A7E2V4 1837 aa10.37□□□□□ -0.75
USP4-202ENST00000351842 DDX11L8A8MPP1 907 aa10.37□□□□□ -0.75
USP4-202ENST00000351842 PIK3CDO00329 1044 aa10.37□□□□□ -0.75
USP4-202ENST00000351842 EML1O00423 815 aa10.37□□□□□ -0.75
USP4-202ENST00000351842 ATP2A1O14983 1001 aa10.37□□□□□ -0.75
USP4-202ENST00000351842 DYNC1LI2O43237 492 aaPredicted RBP10.37□□□□□ -0.75
USP4-202ENST00000351842 IGBP1P78318 339 aa10.37□□□□□ -0.75
USP4-202ENST00000351842 GNPTABQ3T906 1256 aa10.37□□□□□ -0.75
USP4-202ENST00000351842 VTI1AQ96AJ9 217 aa10.37□□□□□ -0.75
USP4-202ENST00000351842 ZBTB10Q96DT7 871 aa10.37□□□□□ -0.75
USP4-202ENST00000351842 MORF4L1Q9UBU8 362 aa10.37□□□□□ -0.75
USP4-202ENST00000351842 PGK1P00558 417 aa10.37□□□□□ -0.75
USP4-202ENST00000351842 SYKP43405 635 aa10.37□□□□□ -0.75
USP4-202ENST00000351842 ATP2C1P98194 919 aaPredicted RBP10.37□□□□□ -0.75
USP4-202ENST00000351842 BEX3Q00994 111 aa10.37□□□□□ -0.75
USP4-202ENST00000351842 MAP2K5Q13163 448 aa10.37□□□□□ -0.75
USP4-202ENST00000351842 ITGB3BPQ13352 177 aaPredicted RBP10.37□□□□□ -0.75
USP4-202ENST00000351842 GLG1Q92896 1179 aa10.37□□□□□ -0.75
USP4-202ENST00000351842 HHIPL1Q96JK4 782 aa10.37□□□□□ -0.75
USP4-202ENST00000351842 TINF2Q9BSI4 451 aa10.37□□□□□ -0.75
USP4-202ENST00000351842 FBXO2Q9UK22 296 aaPredicted RBP10.37□□□□□ -0.75
USP4-202ENST00000351842 RCOR1Q9UKL0 485 aa10.37□□□□□ -0.75
USP4-202ENST00000351842 KIAA1024Q9UPX6 916 aa10.37□□□□□ -0.75
USP4-202ENST00000351842 KINO60870 393 aaKnown RBP10.36□□□□□ -0.75
USP4-202ENST00000351842 MAP2K1Q02750 393 aaPredicted RBP10.36□□□□□ -0.75
USP4-202ENST00000351842 CSPP1Q1MSJ5 1256 aa10.36□□□□□ -0.75
USP4-202ENST00000351842 CCDC144BQ3MJ40 725 aa10.36□□□□□ -0.75
USP4-202ENST00000351842 DYMQ7RTS9 669 aa10.36□□□□□ -0.75
USP4-202ENST00000351842 MRPS27Q92552 414 aaKnown RBP10.36□□□□□ -0.75
USP4-202ENST00000351842 KCNH3Q9ULD8 1083 aa10.36□□□□□ -0.75
USP4-202ENST00000351842 YEATS4O95619 227 aa10.36□□□□□ -0.75
USP4-202ENST00000351842 HSDL1Q3SXM5 330 aa10.36□□□□□ -0.75
USP4-202ENST00000351842 PCNX4Q63HM2 1172 aa10.36□□□□□ -0.75
USP4-202ENST00000351842 MIER3Q7Z3K6 550 aa10.36□□□□□ -0.75
USP4-202ENST00000351842 DHX37Q8IY37 1157 aaKnown RBP10.36□□□□□ -0.75
USP4-202ENST00000351842 TRIB2Q92519 343 aa10.36□□□□□ -0.75
USP4-202ENST00000351842 LENG9Q96B70 501 aa10.36□□□□□ -0.75
USP4-202ENST00000351842 FGD4Q96M96 766 aa10.36□□□□□ -0.75
USP4-202ENST00000351842 IGLV3-22A0A075B6J6 115 aa10.35□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 55.6 ms