RNA–Protein interactions for RNA: ENST00000350028.4

SAMM50-201, Transcript of SAMM50 sorting and assembly machinery component, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SAMM50, Length 1,717 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SAMM50-201ENST00000350028 PRKCSHP14314 528 aaPredicted RBP18.6■□□□□ 0.57
SAMM50-201ENST00000350028 KRT9P35527 623 aa18.6■□□□□ 0.57
SAMM50-201ENST00000350028 MTIF2P46199 727 aaKnown RBP18.6■□□□□ 0.57
SAMM50-201ENST00000350028 CYP26C1Q6V0L0 522 aa18.6■□□□□ 0.57
SAMM50-201ENST00000350028 MIGA2Q7L4E1 593 aa18.6■□□□□ 0.57
SAMM50-201ENST00000350028 CCDC65Q8IXS2 484 aa18.6■□□□□ 0.57
SAMM50-201ENST00000350028 ZNF710Q8N1W2 664 aa18.6■□□□□ 0.57
SAMM50-201ENST00000350028 ANKRD7Q92527 254 aa18.6■□□□□ 0.57
SAMM50-201ENST00000350028 LENG9Q96B70 501 aa18.6■□□□□ 0.57
SAMM50-201ENST00000350028 ERO1AQ96HE7 468 aa18.6■□□□□ 0.57
SAMM50-201ENST00000350028 FHDC1Q9C0D6 1143 aaPredicted RBP18.6■□□□□ 0.57
SAMM50-201ENST00000350028 PANK4Q9NVE7 773 aa18.6■□□□□ 0.57
SAMM50-201ENST00000350028 MRPL11Q9Y3B7 192 aaKnown RBP18.6■□□□□ 0.57
SAMM50-201ENST00000350028 ADGRG1Q9Y653 693 aa18.6■□□□□ 0.57
SAMM50-201ENST00000350028 ABCB11O95342 1321 aa18.59■□□□□ 0.57
SAMM50-201ENST00000350028 FER1L6Q2WGJ9 1857 aa18.59■□□□□ 0.57
SAMM50-201ENST00000350028 E9PMD0 336 aa18.59■□□□□ 0.57
SAMM50-201ENST00000350028 PES1O00541 588 aaKnown RBP18.59■□□□□ 0.57
SAMM50-201ENST00000350028 ZNF76P36508 570 aa18.59■□□□□ 0.57
SAMM50-201ENST00000350028 SPIRE1Q08AE8 756 aa18.59■□□□□ 0.57
SAMM50-201ENST00000350028 COASYQ13057 564 aa18.59■□□□□ 0.57
SAMM50-201ENST00000350028 RETREG2Q8NC44 543 aa18.59■□□□□ 0.57
SAMM50-201ENST00000350028 TSG101Q99816 390 aa18.59■□□□□ 0.57
SAMM50-201ENST00000350028 EHMT1Q9H9B1 1298 aa18.59■□□□□ 0.57
SAMM50-201ENST00000350028 POTEB3A0JP26 581 aa18.58■□□□□ 0.57
SAMM50-201ENST00000350028 POTECB2RU33 542 aa18.58■□□□□ 0.57
SAMM50-201ENST00000350028 FAM86B1E9PN63 330 aa18.58■□□□□ 0.57
SAMM50-201ENST00000350028 GCOM1H8Y6P7 765 aaPredicted RBP18.58■□□□□ 0.57
SAMM50-201ENST00000350028 MED24O75448 989 aa18.58■□□□□ 0.57
SAMM50-201ENST00000350028 SSBP05455 408 aaKnown RBP eCLIP18.58■□□□□ 0.57
SAMM50-201ENST00000350028 FAM86B2P0C5J1 330 aa18.58■□□□□ 0.57
SAMM50-201ENST00000350028 POLR2MP0CAP2 368 aa18.58■□□□□ 0.57
SAMM50-201ENST00000350028 RPS12P25398 132 aaKnown RBP18.58■□□□□ 0.57
SAMM50-201ENST00000350028 HOXA13P31271 388 aaPredicted RBP18.58■□□□□ 0.57
SAMM50-201ENST00000350028 TBC1D8BQ0IIM8 1120 aa18.58■□□□□ 0.57
SAMM50-201ENST00000350028 MTF1Q14872 753 aa18.58■□□□□ 0.57
SAMM50-201ENST00000350028 NBPF9Q3BBW0 867 aa18.58■□□□□ 0.57
SAMM50-201ENST00000350028 POTEBQ6S5H4 581 aa18.58■□□□□ 0.57
SAMM50-201ENST00000350028 CDAN1Q8IWY9 1227 aa18.58■□□□□ 0.57
SAMM50-201ENST00000350028 MYOCDQ8IZQ8 938 aa18.58■□□□□ 0.57
SAMM50-201ENST00000350028 KCTD17Q8N5Z5 321 aa18.58■□□□□ 0.57
SAMM50-201ENST00000350028 KIFC2Q96AC6 838 aa18.58■□□□□ 0.57
SAMM50-201ENST00000350028 NOC4LQ9BVI4 516 aaKnown RBP18.58■□□□□ 0.57
SAMM50-201ENST00000350028 CAPN11Q9UMQ6 739 aa18.58■□□□□ 0.57
SAMM50-201ENST00000350028 LUC7L2Q9Y383 392 aaKnown RBP18.58■□□□□ 0.57
SAMM50-201ENST00000350028 B4DLN1 442 aa18.57■□□□□ 0.56
SAMM50-201ENST00000350028 RPA1P27694 616 aa18.57■□□□□ 0.56
SAMM50-201ENST00000350028 STAT3P40763 770 aa18.57■□□□□ 0.56
SAMM50-201ENST00000350028 ZNF280AP59817 542 aaPredicted RBP18.57■□□□□ 0.56
SAMM50-201ENST00000350028 FAM26FQ5R3K3 315 aa18.57■□□□□ 0.56
SAMM50-201ENST00000350028 NCAPH2Q6IBW4 605 aa18.57■□□□□ 0.56
SAMM50-201ENST00000350028 CCDC174Q6PII3 467 aa18.57■□□□□ 0.56
SAMM50-201ENST00000350028 GPBP1Q86WP2 473 aa18.57■□□□□ 0.56
SAMM50-201ENST00000350028 OR8K1Q8NGG5 319 aa18.57■□□□□ 0.56
SAMM50-201ENST00000350028 IQCDQ96DY2 449 aa18.57■□□□□ 0.56
SAMM50-201ENST00000350028 DESI2Q9BSY9 194 aa18.57■□□□□ 0.56
SAMM50-201ENST00000350028 GINM1Q9NU53 330 aa18.57■□□□□ 0.56
SAMM50-201ENST00000350028 PITPNM2Q9BZ72 1349 aa18.57■□□□□ 0.56
SAMM50-201ENST00000350028 TTC26A0AVF1 554 aa18.57■□□□□ 0.56
SAMM50-201ENST00000350028 RNF225M0QZC1 329 aaPredicted RBP18.57■□□□□ 0.56
SAMM50-201ENST00000350028 MSH4O15457 936 aa18.57■□□□□ 0.56
SAMM50-201ENST00000350028 KIF20AO95235 890 aa18.57■□□□□ 0.56
SAMM50-201ENST00000350028 NCBP1Q09161 790 aaKnown RBP18.57■□□□□ 0.56
SAMM50-201ENST00000350028 TNFAIP1Q13829 316 aa18.57■□□□□ 0.56
SAMM50-201ENST00000350028 TSR1Q2NL82 804 aaKnown RBP18.57■□□□□ 0.56
SAMM50-201ENST00000350028 FKBP15Q5T1M5 1219 aa18.57■□□□□ 0.56
SAMM50-201ENST00000350028 CATSPER3Q86XQ3 398 aa18.57■□□□□ 0.56
SAMM50-201ENST00000350028 ERGIC2Q96RQ1 377 aa18.57■□□□□ 0.56
SAMM50-201ENST00000350028 ZNF215Q9UL58 517 aaPredicted RBP18.57■□□□□ 0.56
SAMM50-201ENST00000350028 CFBP00751 764 aa18.56■□□□□ 0.56
SAMM50-201ENST00000350028 TAL1P17542 331 aaPredicted RBP18.56■□□□□ 0.56
SAMM50-201ENST00000350028 CYP11B2P19099 503 aa18.56■□□□□ 0.56
SAMM50-201ENST00000350028 CASQ1P31415 396 aa18.56■□□□□ 0.56
SAMM50-201ENST00000350028 GNG11P61952 73 aa18.56■□□□□ 0.56
SAMM50-201ENST00000350028 RASA3Q14644 834 aa18.56■□□□□ 0.56
SAMM50-201ENST00000350028 MIIPQ5JXC2 388 aa18.56■□□□□ 0.56
SAMM50-201ENST00000350028 UIMC1Q96RL1 719 aa18.56■□□□□ 0.56
SAMM50-201ENST00000350028 DNM3Q9UQ16 869 aa18.56■□□□□ 0.56
SAMM50-201ENST00000350028 SLC12A3P55017 1021 aa18.55■□□□□ 0.56
SAMM50-201ENST00000350028 ERVK-24P63145 666 aa18.55■□□□□ 0.56
SAMM50-201ENST00000350028 ZYXQ15942 572 aaKnown RBP18.55■□□□□ 0.56
SAMM50-201ENST00000350028 FIGNQ5HY92 759 aa18.55■□□□□ 0.56
SAMM50-201ENST00000350028 DNAJC7Q99615 494 aa18.55■□□□□ 0.56
SAMM50-201ENST00000350028 POLR3CQ9BUI4 534 aaPredicted RBP18.55■□□□□ 0.56
SAMM50-201ENST00000350028 DEFB129Q9H1M3 183 aa18.55■□□□□ 0.56
SAMM50-201ENST00000350028 MRPL44Q9H9J2 332 aaKnown RBP18.55■□□□□ 0.56
SAMM50-201ENST00000350028 IGLV3-22A0A075B6J6 115 aa18.54■□□□□ 0.56
SAMM50-201ENST00000350028 PHF20L1A8MW92 1017 aa18.54■□□□□ 0.56
SAMM50-201ENST00000350028 KRT18P05783 430 aaKnown RBP18.54■□□□□ 0.56
SAMM50-201ENST00000350028 SPATA31C1P0DKV0 1188 aa18.54■□□□□ 0.56
SAMM50-201ENST00000350028 LRRC41Q15345 812 aa18.54■□□□□ 0.56
SAMM50-201ENST00000350028 MAN2A1Q16706 1144 aa18.54■□□□□ 0.56
SAMM50-201ENST00000350028 KIF4BQ2VIQ3 1234 aa18.54■□□□□ 0.56
SAMM50-201ENST00000350028 VWA3BQ502W6 1294 aa18.54■□□□□ 0.56
SAMM50-201ENST00000350028 SYT2Q8N9I0 419 aaPredicted RBP18.54■□□□□ 0.56
SAMM50-201ENST00000350028 VAV3Q9UKW4 847 aa18.54■□□□□ 0.56
SAMM50-201ENST00000350028 PCDHA2Q9Y5H9 948 aa18.54■□□□□ 0.56
SAMM50-201ENST00000350028 FRMD3A2A2Y4 597 aa18.54■□□□□ 0.56
SAMM50-201ENST00000350028 POTEFA5A3E0 1075 aa18.54■□□□□ 0.56
SAMM50-201ENST00000350028 NFKBIEO00221 500 aa18.54■□□□□ 0.56
Retrieved 100 of 20,778 RNA–protein pairs in 16.7 ms