RNA–Protein interactions for RNA: ENST00000347617.10

HMGA1-202, Transcript of high mobility group AT-hook 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene HMGA1, Length 1,773 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1-202ENST00000347617 STAT6P42226 847 aa17.55■□□□□ 0.4
HMGA1-202ENST00000347617 RCSD1Q6JBY9 416 aa17.55■□□□□ 0.4
HMGA1-202ENST00000347617 ARHGAP27Q6ZUM4 889 aa17.55■□□□□ 0.4
HMGA1-202ENST00000347617 TAX1BP1Q86VP1 789 aa17.55■□□□□ 0.4
HMGA1-202ENST00000347617 GSPT2Q8IYD1 628 aaKnown RBP17.55■□□□□ 0.4
HMGA1-202ENST00000347617 CCDC42Q96M95 316 aa17.55■□□□□ 0.4
HMGA1-202ENST00000347617 PDGFDQ9GZP0 370 aaPredicted RBP17.55■□□□□ 0.4
HMGA1-202ENST00000347617 LACRTQ9GZZ8 138 aa17.55■□□□□ 0.4
HMGA1-202ENST00000347617 MYH1P12882 1939 aa17.55■□□□□ 0.4
HMGA1-202ENST00000347617 HMGB1P1B2RPK0 211 aaPredicted RBP17.54■□□□□ 0.4
HMGA1-202ENST00000347617 PJA2O43164 708 aa17.54■□□□□ 0.4
HMGA1-202ENST00000347617 RASA1P20936 1047 aa17.54■□□□□ 0.4
HMGA1-202ENST00000347617 NOVP48745 357 aa17.54■□□□□ 0.4
HMGA1-202ENST00000347617 CDK8P49336 464 aa17.54■□□□□ 0.4
HMGA1-202ENST00000347617 SMTNP53814 917 aa17.54■□□□□ 0.4
HMGA1-202ENST00000347617 NAP1L1P55209 391 aaKnown RBP17.54■□□□□ 0.4
HMGA1-202ENST00000347617 TTMPQ5BVD1 217 aa17.54■□□□□ 0.4
HMGA1-202ENST00000347617 FKBP15Q5T1M5 1219 aa17.54■□□□□ 0.4
HMGA1-202ENST00000347617 CFAP58Q5T655 872 aa17.54■□□□□ 0.4
HMGA1-202ENST00000347617 FBXW10Q5XX13 1052 aa17.54■□□□□ 0.4
HMGA1-202ENST00000347617 APOBEC3HQ6NTF7 200 aaKnown RBP17.54■□□□□ 0.4
HMGA1-202ENST00000347617 GIMAP8Q8ND71 665 aaPredicted RBP17.54■□□□□ 0.4
HMGA1-202ENST00000347617 NEDD1Q8NHV4 660 aa17.54■□□□□ 0.4
HMGA1-202ENST00000347617 OSBPL9Q96SU4 736 aa17.54■□□□□ 0.4
HMGA1-202ENST00000347617 LRRC1Q9BTT6 524 aa17.54■□□□□ 0.4
HMGA1-202ENST00000347617 DBNDD1Q9H9R9 158 aa17.54■□□□□ 0.4
HMGA1-202ENST00000347617 SERPINA10Q9UK55 444 aa17.54■□□□□ 0.4
HMGA1-202ENST00000347617 CEP83Q9Y592 693 aa17.54■□□□□ 0.4
HMGA1-202ENST00000347617 ABCB11O95342 1321 aa17.54■□□□□ 0.4
HMGA1-202ENST00000347617 FAM205CA6NFA0 338 aa17.53■□□□□ 0.4
HMGA1-202ENST00000347617 CALML3P27482 149 aa17.53■□□□□ 0.4
HMGA1-202ENST00000347617 KIF5BP33176 963 aa17.53■□□□□ 0.4
HMGA1-202ENST00000347617 TBC1D8BQ0IIM8 1120 aa17.53■□□□□ 0.4
HMGA1-202ENST00000347617 COBLL1Q53SF7 1204 aa17.53■□□□□ 0.4
HMGA1-202ENST00000347617 FAM47AQ5JRC9 791 aa17.53■□□□□ 0.4
HMGA1-202ENST00000347617 PPP4R3AQ6IN85 833 aa17.53■□□□□ 0.4
HMGA1-202ENST00000347617 C8orf74Q6P047 294 aa17.53■□□□□ 0.4
HMGA1-202ENST00000347617 ZSCAN29Q8IWY8 852 aaPredicted RBP17.53■□□□□ 0.4
HMGA1-202ENST00000347617 RNF10Q8N5U6 811 aaKnown RBP17.53■□□□□ 0.4
HMGA1-202ENST00000347617 WHAMMQ8TF30 809 aa17.53■□□□□ 0.4
HMGA1-202ENST00000347617 GDAP1L1Q96MZ0 367 aa17.53■□□□□ 0.4
HMGA1-202ENST00000347617 TUBGCP2Q9BSJ2 902 aa17.53■□□□□ 0.4
HMGA1-202ENST00000347617 USP40Q9NVE5 1235 aa17.53■□□□□ 0.4
HMGA1-202ENST00000347617 GOLGA6L7A0A1B0GV03 622 aa17.53■□□□□ 0.4
HMGA1-202ENST00000347617 CLGNO14967 610 aa17.53■□□□□ 0.4
HMGA1-202ENST00000347617 ZNF185O15231 689 aa17.53■□□□□ 0.4
HMGA1-202ENST00000347617 TSPY3P0CV98 308 aa17.53■□□□□ 0.4
HMGA1-202ENST00000347617 TSPY8P0CW00 308 aa17.53■□□□□ 0.4
HMGA1-202ENST00000347617 CRKP46108 304 aa17.53■□□□□ 0.4
HMGA1-202ENST00000347617 GNAQP50148 359 aa17.53■□□□□ 0.4
HMGA1-202ENST00000347617 EVX2Q03828 476 aa17.53■□□□□ 0.4
HMGA1-202ENST00000347617 GABPAQ06546 454 aa17.53■□□□□ 0.4
HMGA1-202ENST00000347617 NEDD9Q14511 834 aa17.53■□□□□ 0.4
HMGA1-202ENST00000347617 CCDC96Q2M329 555 aa17.53■□□□□ 0.4
HMGA1-202ENST00000347617 HAUS3Q68CZ6 603 aa17.53■□□□□ 0.4
HMGA1-202ENST00000347617 TTI2Q6NXR4 508 aa17.53■□□□□ 0.4
HMGA1-202ENST00000347617 CCDC82Q8N4S0 544 aa17.53■□□□□ 0.4
HMGA1-202ENST00000347617 DYNLL2Q96FJ2 89 aa17.53■□□□□ 0.4
HMGA1-202ENST00000347617 MTRQ99707 1265 aa17.53■□□□□ 0.4
HMGA1-202ENST00000347617 EDEM3Q9BZQ6 932 aa17.53■□□□□ 0.4
HMGA1-202ENST00000347617 VCPKMTQ9H867 229 aa17.53■□□□□ 0.4
HMGA1-202ENST00000347617 GDF3Q9NR23 364 aa17.53■□□□□ 0.4
HMGA1-202ENST00000347617 DISC1Q9NRI5 854 aa17.53■□□□□ 0.4
HMGA1-202ENST00000347617 IL17RBQ9NRM6 502 aa17.53■□□□□ 0.4
HMGA1-202ENST00000347617 SWAP70Q9UH65 585 aa17.53■□□□□ 0.4
HMGA1-202ENST00000347617 GDAQ9Y2T3 454 aa17.53■□□□□ 0.4
HMGA1-202ENST00000347617 GRID2IPA4D2P6 1211 aa17.52■□□□□ 0.4
HMGA1-202ENST00000347617 RCCD1A6NED2 376 aa17.52■□□□□ 0.4
HMGA1-202ENST00000347617 PES1O00541 588 aaKnown RBP17.52■□□□□ 0.4
HMGA1-202ENST00000347617 CCNE1P24864 410 aa17.52■□□□□ 0.4
HMGA1-202ENST00000347617 LSP1P33241 339 aa17.52■□□□□ 0.4
HMGA1-202ENST00000347617 CFAP221Q4G0U5 840 aa17.52■□□□□ 0.4
HMGA1-202ENST00000347617 EARS2Q5JPH6 523 aaKnown RBP17.52■□□□□ 0.4
HMGA1-202ENST00000347617 CDC42EP5Q6NZY7 148 aa17.52■□□□□ 0.4
HMGA1-202ENST00000347617 TMTC3Q6ZXV5 915 aa17.52■□□□□ 0.4
HMGA1-202ENST00000347617 IQCKQ8N0W5 287 aa17.52■□□□□ 0.4
HMGA1-202ENST00000347617 P3H4Q92791 437 aa17.52■□□□□ 0.4
HMGA1-202ENST00000347617 IFIH1Q9BYX4 1025 aaKnown RBP17.52■□□□□ 0.4
HMGA1-202ENST00000347617 DMGDHQ9UI17 866 aaKnown RBP17.52■□□□□ 0.4
HMGA1-202ENST00000347617 PLAGL2Q9UPG8 496 aa17.52■□□□□ 0.4
HMGA1-202ENST00000347617 PCDHA13Q9Y5I0 950 aa17.52■□□□□ 0.4
HMGA1-202ENST00000347617 MACROD2A1Z1Q3 448 aa17.51■□□□□ 0.39
HMGA1-202ENST00000347617 PPP1R37O75864 691 aa17.51■□□□□ 0.39
HMGA1-202ENST00000347617 DPEP1P16444 411 aa17.51■□□□□ 0.39
HMGA1-202ENST00000347617 PSEN1P49768 467 aa17.51■□□□□ 0.39
HMGA1-202ENST00000347617 ACTN3Q08043 901 aaPredicted RBP17.51■□□□□ 0.39
HMGA1-202ENST00000347617 AOC3Q16853 763 aa17.51■□□□□ 0.39
HMGA1-202ENST00000347617 LRIG3Q6UXM1 1119 aa17.51■□□□□ 0.39
HMGA1-202ENST00000347617 GIMAP7Q8NHV1 300 aa17.51■□□□□ 0.39
HMGA1-202ENST00000347617 MAGEC3Q8TD91 643 aa17.51■□□□□ 0.39
HMGA1-202ENST00000347617 STAMQ92783 540 aa17.51■□□□□ 0.39
HMGA1-202ENST00000347617 ARL8AQ96BM9 186 aa17.51■□□□□ 0.39
HMGA1-202ENST00000347617 SHISA4Q96DD7 197 aa17.51■□□□□ 0.39
HMGA1-202ENST00000347617 RRP36Q96EU6 259 aaKnown RBP17.51■□□□□ 0.39
HMGA1-202ENST00000347617 ZIM3Q96PE6 472 aa17.51■□□□□ 0.39
HMGA1-202ENST00000347617 IDI2Q9BXS1 227 aa17.51■□□□□ 0.39
HMGA1-202ENST00000347617 MTFR1LQ9H019 292 aa17.51■□□□□ 0.39
HMGA1-202ENST00000347617 EHD4Q9H223 541 aa17.51■□□□□ 0.39
HMGA1-202ENST00000347617 LUC7LQ9NQ29 371 aaKnown RBP17.51■□□□□ 0.39
HMGA1-202ENST00000347617 SAP30BPQ9UHR5 308 aaKnown RBP17.51■□□□□ 0.39
Retrieved 100 of 20,778 RNA–protein pairs in 10.9 ms