RNA–Protein interactions for RNA: ENST00000333496.14

CLN3-201, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,608 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-201ENST00000333496 UBA1P22314 1058 aaKnown RBP18.15■□□□□ 0.5
CLN3-201ENST00000333496 BMP8BP34820 402 aa18.15■□□□□ 0.5
CLN3-201ENST00000333496 ADCY7P51828 1080 aa18.15■□□□□ 0.5
CLN3-201ENST00000333496 BRDTQ58F21 947 aaPredicted RBP18.15■□□□□ 0.5
CLN3-201ENST00000333496 PGBD1Q96JS3 809 aa18.15■□□□□ 0.5
CLN3-201ENST00000333496 MTG1Q9BT17 334 aaPredicted RBP18.15■□□□□ 0.5
CLN3-201ENST00000333496 PRKAG2Q9UGJ0 569 aa18.15■□□□□ 0.5
CLN3-201ENST00000333496 DCDC2CA8MYV0 355 aa18.14■□□□□ 0.49
CLN3-201ENST00000333496 SPATA31C2B4DYI2 1134 aa18.14■□□□□ 0.49
CLN3-201ENST00000333496 SORBS3O60504 671 aa18.14■□□□□ 0.49
CLN3-201ENST00000333496 CD4P01730 458 aa18.14■□□□□ 0.49
CLN3-201ENST00000333496 SCRN1Q12765 414 aa18.14■□□□□ 0.49
CLN3-201ENST00000333496 GNPTABQ3T906 1256 aa18.14■□□□□ 0.49
CLN3-201ENST00000333496 CELF3Q5SZQ8 465 aaKnown RBP18.14■□□□□ 0.49
CLN3-201ENST00000333496 XRRA1Q6P2D8 792 aa18.14■□□□□ 0.49
CLN3-201ENST00000333496 TEX2Q8IWB9 1127 aa18.14■□□□□ 0.49
CLN3-201ENST00000333496 DHX37Q8IY37 1157 aaKnown RBP18.14■□□□□ 0.49
CLN3-201ENST00000333496 ZMYND12Q9H0C1 365 aa18.14■□□□□ 0.49
CLN3-201ENST00000333496 TMEM260Q9NX78 707 aa18.14■□□□□ 0.49
CLN3-201ENST00000333496 TRIP12Q14669 1992 aaPredicted RBP18.14■□□□□ 0.49
CLN3-201ENST00000333496 KIAA0355O15063 1070 aa18.13■□□□□ 0.49
CLN3-201ENST00000333496 KPNA6O60684 536 aa18.13■□□□□ 0.49
CLN3-201ENST00000333496 GGPS1O95749 300 aa18.13■□□□□ 0.49
CLN3-201ENST00000333496 AKAP17AQ02040 695 aaKnown RBP18.13■□□□□ 0.49
CLN3-201ENST00000333496 LAMC2Q13753 1193 aa18.13■□□□□ 0.49
CLN3-201ENST00000333496 HSDL1Q3SXM5 330 aa18.13■□□□□ 0.49
CLN3-201ENST00000333496 PPP1R13LQ8WUF5 828 aa18.13■□□□□ 0.49
CLN3-201ENST00000333496 TMEM39AQ9NV64 488 aa18.13■□□□□ 0.49
CLN3-201ENST00000333496 TBX21Q9UL17 535 aa18.13■□□□□ 0.49
CLN3-201ENST00000333496 ESYT2A0FGR8 921 aa18.12■□□□□ 0.49
CLN3-201ENST00000333496 FIBPO43427 364 aa18.12■□□□□ 0.49
CLN3-201ENST00000333496 ITGB5P18084 799 aa18.12■□□□□ 0.49
CLN3-201ENST00000333496 PPTC7Q8NI37 304 aa18.12■□□□□ 0.49
CLN3-201ENST00000333496 KAT2BQ92831 832 aa18.12■□□□□ 0.49
CLN3-201ENST00000333496 BADQ92934 168 aa18.12■□□□□ 0.49
CLN3-201ENST00000333496 ANO3Q9BYT9 981 aa18.12■□□□□ 0.49
CLN3-201ENST00000333496 UBIAD1Q9Y5Z9 338 aa18.12■□□□□ 0.49
CLN3-201ENST00000333496 B4GALT4O60513 344 aa18.12■□□□□ 0.49
CLN3-201ENST00000333496 PFKFB2O60825 505 aa18.12■□□□□ 0.49
CLN3-201ENST00000333496 FOSP01100 380 aaPredicted RBP18.12■□□□□ 0.49
CLN3-201ENST00000333496 HOXD8P13378 290 aaPredicted RBP18.12■□□□□ 0.49
CLN3-201ENST00000333496 NEK4P51957 841 aa18.12■□□□□ 0.49
CLN3-201ENST00000333496 SSRP1Q08945 709 aaKnown RBP18.12■□□□□ 0.49
CLN3-201ENST00000333496 NBPF20Q3BBV1 942 aa18.12■□□□□ 0.49
CLN3-201ENST00000333496 KIF2CQ99661 725 aa18.12■□□□□ 0.49
CLN3-201ENST00000333496 SEZ6LQ9BYH1 1024 aa18.12■□□□□ 0.49
CLN3-201ENST00000333496 GLT8D2Q9H1C3 349 aa18.12■□□□□ 0.49
CLN3-201ENST00000333496 VPS54Q9P1Q0 977 aa18.12■□□□□ 0.49
CLN3-201ENST00000333496 CPLX1O14810 134 aa18.11■□□□□ 0.49
CLN3-201ENST00000333496 DTNBO60941 627 aa18.11■□□□□ 0.49
CLN3-201ENST00000333496 ATP9AO75110 1047 aa18.11■□□□□ 0.49
CLN3-201ENST00000333496 LARGE1O95461 756 aa18.11■□□□□ 0.49
CLN3-201ENST00000333496 AP3B2Q13367 1082 aa18.11■□□□□ 0.49
CLN3-201ENST00000333496 ANKRD1Q15327 319 aa18.11■□□□□ 0.49
CLN3-201ENST00000333496 DGKDQ16760 1214 aa18.11■□□□□ 0.49
CLN3-201ENST00000333496 SPATA33Q96N06 139 aa18.11■□□□□ 0.49
CLN3-201ENST00000333496 LBHD1Q9BQE6 289 aaPredicted RBP18.11■□□□□ 0.49
CLN3-201ENST00000333496 UBE2OQ9C0C9 1292 aaKnown RBP18.11■□□□□ 0.49
CLN3-201ENST00000333496 TRPV6Q9H1D0 765 aa18.11■□□□□ 0.49
CLN3-201ENST00000333496 SLKQ9H2G2 1235 aaPredicted RBP18.11■□□□□ 0.49
CLN3-201ENST00000333496 TELO2Q9Y4R8 837 aa18.11■□□□□ 0.49
CLN3-201ENST00000333496 ME3Q16798 604 aa18.1■□□□□ 0.49
CLN3-201ENST00000333496 JAKMIP3Q5VZ66 844 aa18.1■□□□□ 0.49
CLN3-201ENST00000333496 CYFIP1Q7L576 1253 aa18.1■□□□□ 0.49
CLN3-201ENST00000333496 NLRX1Q86UT6 975 aa18.1■□□□□ 0.49
CLN3-201ENST00000333496 TRIM22Q8IYM9 498 aa18.1■□□□□ 0.49
CLN3-201ENST00000333496 CYP2W1Q8TAV3 490 aa18.1■□□□□ 0.49
CLN3-201ENST00000333496 CCDC12Q8WUD4 166 aaPredicted RBP18.1■□□□□ 0.49
CLN3-201ENST00000333496 GPRASP2Q96D09 838 aa18.1■□□□□ 0.49
CLN3-201ENST00000333496 AIFM3Q96NN9 605 aa18.1■□□□□ 0.49
CLN3-201ENST00000333496 SENP7Q9BQF6 1050 aa18.1■□□□□ 0.49
CLN3-201ENST00000333496 EHMT1Q9H9B1 1298 aa18.1■□□□□ 0.49
CLN3-201ENST00000333496 MLXIPQ9HAP2 919 aa18.1■□□□□ 0.49
CLN3-201ENST00000333496 C6orf50Q9HD87 102 aa18.1■□□□□ 0.49
CLN3-201ENST00000333496 JADE2Q9NQC1 790 aa18.1■□□□□ 0.49
CLN3-201ENST00000333496 A0A1W2PPC1 479 aa18.09■□□□□ 0.49
CLN3-201ENST00000333496 TLR3O15455 904 aaKnown RBP18.09■□□□□ 0.49
CLN3-201ENST00000333496 PPFIA4O75335 1185 aa18.09■□□□□ 0.49
CLN3-201ENST00000333496 DEXIO95424 95 aa18.09■□□□□ 0.49
CLN3-201ENST00000333496 CTDNEP1O95476 244 aa18.09■□□□□ 0.49
CLN3-201ENST00000333496 RAG1P15918 1043 aa18.09■□□□□ 0.49
CLN3-201ENST00000333496 SREBF1P36956 1147 aa18.09■□□□□ 0.49
CLN3-201ENST00000333496 NEDD9Q14511 834 aa18.09■□□□□ 0.49
CLN3-201ENST00000333496 NFRKBQ6P4R8 1299 aa18.09■□□□□ 0.49
CLN3-201ENST00000333496 METTL7BQ6UX53 244 aa18.09■□□□□ 0.49
CLN3-201ENST00000333496 CRYGNQ8WXF5 182 aa18.09■□□□□ 0.49
CLN3-201ENST00000333496 TRMT13Q9NUP7 481 aaKnown RBP18.09■□□□□ 0.49
CLN3-201ENST00000333496 TIMP1P01033 207 aa18.09■□□□□ 0.49
CLN3-201ENST00000333496 ZNF286BP0CG31 522 aa18.09■□□□□ 0.49
CLN3-201ENST00000333496 KCNA2P16389 499 aa18.09■□□□□ 0.49
CLN3-201ENST00000333496 CPLX2Q6PUV4 134 aaKnown RBP18.09■□□□□ 0.49
CLN3-201ENST00000333496 CCDC148Q8NFR7 591 aa18.09■□□□□ 0.49
CLN3-201ENST00000333496 RASGRP4Q8TDF6 673 aa18.09■□□□□ 0.49
CLN3-201ENST00000333496 MXRA8Q9BRK3 442 aa18.09■□□□□ 0.49
CLN3-201ENST00000333496 SH3GLB2Q9NR46 395 aa18.09■□□□□ 0.49
CLN3-201ENST00000333496 KAT6AQ92794 2004 aa18.08■□□□□ 0.49
CLN3-201ENST00000333496 HAS3O00219 553 aa18.08■□□□□ 0.48
CLN3-201ENST00000333496 F2P00734 622 aa18.08■□□□□ 0.48
CLN3-201ENST00000333496 GNA11P29992 359 aa18.08■□□□□ 0.48
CLN3-201ENST00000333496 FXR1P51114 621 aaKnown RBP eCLIP18.08■□□□□ 0.48
Retrieved 100 of 20,778 RNA–protein pairs in 16 ms