RNA–Protein interactions for RNA: ENST00000331194.8

CCDC88C-201, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 5 BASIC

Gene CCDC88C, Length 3,104 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-201ENST00000331194 DTHD1Q6ZMT9 781 aa14.8□□□□□ -0.04
CCDC88C-201ENST00000331194 TMTC3Q6ZXV5 915 aa14.8□□□□□ -0.04
CCDC88C-201ENST00000331194 ZSCAN29Q8IWY8 852 aaPredicted RBP14.8□□□□□ -0.04
CCDC88C-201ENST00000331194 WHAMMQ8TF30 809 aa14.8□□□□□ -0.04
CCDC88C-201ENST00000331194 BAP1Q92560 729 aa14.8□□□□□ -0.04
CCDC88C-201ENST00000331194 SPDL1Q96EA4 605 aa14.8□□□□□ -0.04
CCDC88C-201ENST00000331194 TAF1DQ9H5J8 278 aaPredicted RBP14.8□□□□□ -0.04
CCDC88C-201ENST00000331194 PLCB1Q9NQ66 1216 aa14.8□□□□□ -0.04
CCDC88C-201ENST00000331194 KBTBD4Q9NVX7 518 aa14.8□□□□□ -0.04
CCDC88C-201ENST00000331194 ZBTB12Q9Y330 459 aaPredicted RBP14.8□□□□□ -0.04
CCDC88C-201ENST00000331194 PARP4Q9UKK3 1724 aaKnown RBP14.8□□□□□ -0.04
CCDC88C-201ENST00000331194 CNTNAP5Q8WYK1 1306 aa14.8□□□□□ -0.04
CCDC88C-201ENST00000331194 A0A1W2PQJ5 194 aa14.79□□□□□ -0.04
CCDC88C-201ENST00000331194 PPP2R2AP63151 447 aa14.79□□□□□ -0.04
CCDC88C-201ENST00000331194 KIAA0895Q8NCT3 520 aa14.79□□□□□ -0.04
CCDC88C-201ENST00000331194 TATDN2Q93075 761 aa14.79□□□□□ -0.04
CCDC88C-201ENST00000331194 DHTKD1Q96HY7 919 aaPredicted RBP14.79□□□□□ -0.04
CCDC88C-201ENST00000331194 INPP4AQ96PE3 977 aaPredicted RBP14.79□□□□□ -0.04
CCDC88C-201ENST00000331194 DISP2A7MBM2 1401 aa14.79□□□□□ -0.04
CCDC88C-201ENST00000331194 KCNK3O14649 394 aa14.79□□□□□ -0.04
CCDC88C-201ENST00000331194 LCA5LO95447 670 aa14.79□□□□□ -0.04
CCDC88C-201ENST00000331194 CALRP27797 417 aaKnown RBP14.79□□□□□ -0.04
CCDC88C-201ENST00000331194 HNRNPH3P31942 346 aaKnown RBP14.79□□□□□ -0.04
CCDC88C-201ENST00000331194 GCKP35557 465 aa14.79□□□□□ -0.04
CCDC88C-201ENST00000331194 INHBEP58166 350 aa14.79□□□□□ -0.04
CCDC88C-201ENST00000331194 INF2Q27J81 1249 aa14.79□□□□□ -0.04
CCDC88C-201ENST00000331194 ASTE1Q2TB18 679 aaPredicted RBP14.79□□□□□ -0.04
CCDC88C-201ENST00000331194 FAM133BQ5BKY9 247 aaKnown RBP14.79□□□□□ -0.04
CCDC88C-201ENST00000331194 HGSNATQ68CP4 663 aa14.79□□□□□ -0.04
CCDC88C-201ENST00000331194 CACNA2D4Q7Z3S7 1137 aa14.79□□□□□ -0.04
CCDC88C-201ENST00000331194 ZBTB38Q8NAP3 1195 aaPredicted RBP14.79□□□□□ -0.04
CCDC88C-201ENST00000331194 MTFR1LQ9H019 292 aa14.79□□□□□ -0.04
CCDC88C-201ENST00000331194 DDX47Q9H0S4 455 aaKnown RBP14.79□□□□□ -0.04
CCDC88C-201ENST00000331194 LRP2BPQ9P2M1 347 aa14.79□□□□□ -0.04
CCDC88C-201ENST00000331194 FBXO3Q9UK99 471 aa14.79□□□□□ -0.04
CCDC88C-201ENST00000331194 DCCP43146 1447 aa14.79□□□□□ -0.04
CCDC88C-201ENST00000331194 ALS2Q96Q42 1657 aa14.79□□□□□ -0.04
CCDC88C-201ENST00000331194 TMCO5BA8MYB1 307 aa14.79□□□□□ -0.04
CCDC88C-201ENST00000331194 SCG2P13521 617 aa14.79□□□□□ -0.04
CCDC88C-201ENST00000331194 DRD4P21917 467 aa14.79□□□□□ -0.04
CCDC88C-201ENST00000331194 GKAP1Q5VSY0 366 aaPredicted RBP14.79□□□□□ -0.04
CCDC88C-201ENST00000331194 GLIS3Q8NEA6 775 aa14.79□□□□□ -0.04
CCDC88C-201ENST00000331194 TBC1D22AQ8WUA7 517 aa14.79□□□□□ -0.04
CCDC88C-201ENST00000331194 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP14.79□□□□□ -0.04
CCDC88C-201ENST00000331194 TANGO6Q9C0B7 1094 aa14.79□□□□□ -0.04
CCDC88C-201ENST00000331194 ABCF2Q9UG63 623 aa14.79□□□□□ -0.04
CCDC88C-201ENST00000331194 PJA2O43164 708 aa14.78□□□□□ -0.04
CCDC88C-201ENST00000331194 TLR2O60603 784 aa14.78□□□□□ -0.04
CCDC88C-201ENST00000331194 FMNL3Q8IVF7 1028 aa14.78□□□□□ -0.04
CCDC88C-201ENST00000331194 ARFGAP2Q8N6H7 521 aa14.78□□□□□ -0.04
CCDC88C-201ENST00000331194 ZNF512BQ96KM6 892 aaPredicted RBP14.78□□□□□ -0.04
CCDC88C-201ENST00000331194 NLRP3Q96P20 1036 aa14.78□□□□□ -0.04
CCDC88C-201ENST00000331194 TRIM31Q9BZY9 425 aa14.78□□□□□ -0.04
CCDC88C-201ENST00000331194 PANK4Q9NVE7 773 aa14.78□□□□□ -0.04
CCDC88C-201ENST00000331194 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP14.78□□□□□ -0.04
CCDC88C-201ENST00000331194 ENO4A6NNW6 628 aa14.78□□□□□ -0.04
CCDC88C-201ENST00000331194 DAPK3O43293 454 aa14.78□□□□□ -0.04
CCDC88C-201ENST00000331194 PPIP5K2O43314 1243 aa14.78□□□□□ -0.04
CCDC88C-201ENST00000331194 ANP32DO95626 131 aa14.78□□□□□ -0.04
CCDC88C-201ENST00000331194 CYP7A1P22680 504 aa14.78□□□□□ -0.04
CCDC88C-201ENST00000331194 DYNLL1P63167 89 aaKnown RBP14.78□□□□□ -0.04
CCDC88C-201ENST00000331194 KRT71Q3SY84 523 aa14.78□□□□□ -0.04
CCDC88C-201ENST00000331194 FIGNQ5HY92 759 aa14.78□□□□□ -0.04
CCDC88C-201ENST00000331194 SMIM5Q71RC9 77 aa14.78□□□□□ -0.04
CCDC88C-201ENST00000331194 USP38Q8NB14 1042 aa14.78□□□□□ -0.04
CCDC88C-201ENST00000331194 TBC1D5Q92609 795 aa14.78□□□□□ -0.04
CCDC88C-201ENST00000331194 CUL5Q93034 780 aa14.78□□□□□ -0.04
CCDC88C-201ENST00000331194 TRIM9Q9C026 710 aa14.78□□□□□ -0.04
CCDC88C-201ENST00000331194 RNF41Q9H4P4 317 aaPredicted RBP14.78□□□□□ -0.04
CCDC88C-201ENST00000331194 RTL9Q8NET4 1388 aa14.78□□□□□ -0.04
CCDC88C-201ENST00000331194 UQCRFS1P1P0C7P4 283 aa14.77□□□□□ -0.04
CCDC88C-201ENST00000331194 SLC8A1P32418 973 aa14.77□□□□□ -0.04
CCDC88C-201ENST00000331194 LRRC41Q15345 812 aa14.77□□□□□ -0.04
CCDC88C-201ENST00000331194 MYH7BA7E2Y1 1941 aa14.77□□□□□ -0.04
CCDC88C-201ENST00000331194 WTIPA6NIX2 430 aaPredicted RBP14.77□□□□□ -0.05
CCDC88C-201ENST00000331194 SMIM23A6NLE4 172 aa14.77□□□□□ -0.05
CCDC88C-201ENST00000331194 ITGA4P13612 1032 aa14.77□□□□□ -0.05
CCDC88C-201ENST00000331194 TXNRD1Q16881 649 aa14.77□□□□□ -0.05
CCDC88C-201ENST00000331194 CCDC50Q8IVM0 306 aa14.77□□□□□ -0.05
CCDC88C-201ENST00000331194 PRCCQ92733 491 aaPredicted RBP14.77□□□□□ -0.05
CCDC88C-201ENST00000331194 PYM1Q9BRP8 204 aaKnown RBP14.77□□□□□ -0.05
CCDC88C-201ENST00000331194 CELF4Q9BZC1 486 aaKnown RBP14.77□□□□□ -0.05
CCDC88C-201ENST00000331194 ADAMTS1Q9UHI8 967 aa14.77□□□□□ -0.05
CCDC88C-201ENST00000331194 PNMA2Q9UL42 364 aa14.77□□□□□ -0.05
CCDC88C-201ENST00000331194 CEP104O60308 925 aa14.77□□□□□ -0.05
CCDC88C-201ENST00000331194 TRIM37O94972 964 aa14.77□□□□□ -0.05
CCDC88C-201ENST00000331194 CTSWP56202 376 aa14.77□□□□□ -0.05
CCDC88C-201ENST00000331194 KIAA0753Q2KHM9 967 aa14.77□□□□□ -0.05
CCDC88C-201ENST00000331194 LACTB2Q53H82 288 aaPredicted RBP14.77□□□□□ -0.05
CCDC88C-201ENST00000331194 MEI1Q5TIA1 1274 aa14.77□□□□□ -0.05
CCDC88C-201ENST00000331194 MAEAQ7L5Y9 396 aa14.77□□□□□ -0.05
CCDC88C-201ENST00000331194 DYMQ7RTS9 669 aa14.77□□□□□ -0.05
CCDC88C-201ENST00000331194 ZNF483Q8TF39 744 aaPredicted RBP14.77□□□□□ -0.05
CCDC88C-201ENST00000331194 LMBR1Q8WVP7 490 aa14.77□□□□□ -0.05
CCDC88C-201ENST00000331194 ISCUQ9H1K1 167 aa14.77□□□□□ -0.05
CCDC88C-201ENST00000331194 DPH5Q9H2P9 285 aa14.77□□□□□ -0.05
CCDC88C-201ENST00000331194 RBM28Q9NW13 759 aaKnown RBP14.77□□□□□ -0.05
CCDC88C-201ENST00000331194 AMACRQ9UHK6 382 aa14.77□□□□□ -0.05
CCDC88C-201ENST00000331194 A0A087X0T9 212 aa14.76□□□□□ -0.05
CCDC88C-201ENST00000331194 BICDL2A1A5D9 508 aa14.76□□□□□ -0.05
Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms