RNA–Protein interactions for RNA: ENST00000296098.4

TRIM54-201, Transcript of tripartite motif containing 54, humanhuman

TSL 1 (best) BASIC

Gene TRIM54, Length 2,027 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM54-201ENST00000296098 HDAC9Q9UKV0 1011 aa26.65■■□□□ 1.86
TRIM54-201ENST00000296098 A0A1W2PQJ5 194 aa26.64■■□□□ 1.86
TRIM54-201ENST00000296098 STAT3P40763 770 aa26.64■■□□□ 1.86
TRIM54-201ENST00000296098 CBX1P83916 185 aa26.64■■□□□ 1.86
TRIM54-201ENST00000296098 LRRC41Q15345 812 aa26.64■■□□□ 1.86
TRIM54-201ENST00000296098 MAN2A1Q16706 1144 aa26.64■■□□□ 1.86
TRIM54-201ENST00000296098 LRRC55Q6ZSA7 311 aa26.64■■□□□ 1.86
TRIM54-201ENST00000296098 RTKN2Q8IZC4 609 aa26.64■■□□□ 1.86
TRIM54-201ENST00000296098 TTLL6Q8N841 843 aa26.64■■□□□ 1.86
TRIM54-201ENST00000296098 GLIS3Q8NEA6 775 aa26.64■■□□□ 1.86
TRIM54-201ENST00000296098 AGPAT5Q9NUQ2 364 aa26.64■■□□□ 1.86
TRIM54-201ENST00000296098 ZNHIT6Q9NWK9 470 aaKnown RBP26.64■■□□□ 1.86
TRIM54-201ENST00000296098 OGFRQ9NZT2 677 aa26.64■■□□□ 1.86
TRIM54-201ENST00000296098 REXO2Q9Y3B8 237 aaKnown RBP26.64■■□□□ 1.86
TRIM54-201ENST00000296098 NKRFO15226 690 aaKnown RBP eCLIP26.63■■□□□ 1.85
TRIM54-201ENST00000296098 CCDC65Q8IXS2 484 aa26.63■■□□□ 1.85
TRIM54-201ENST00000296098 SPICE1Q8N0Z3 855 aa26.63■■□□□ 1.85
TRIM54-201ENST00000296098 SLC35F6Q8N357 371 aa26.63■■□□□ 1.85
TRIM54-201ENST00000296098 ZNF70Q9UC06 446 aaPredicted RBP26.63■■□□□ 1.85
TRIM54-201ENST00000296098 PRR12Q9ULL5 1215 aa26.63■■□□□ 1.85
TRIM54-201ENST00000296098 CTAGE9A4FU28 777 aa26.63■■□□□ 1.85
TRIM54-201ENST00000296098 SPIRE1Q08AE8 756 aa26.63■■□□□ 1.85
TRIM54-201ENST00000296098 DLGAP5Q15398 846 aa26.63■■□□□ 1.85
TRIM54-201ENST00000296098 GPBP1Q86WP2 473 aa26.63■■□□□ 1.85
TRIM54-201ENST00000296098 FAM151AQ8WW52 585 aa26.63■■□□□ 1.85
TRIM54-201ENST00000296098 PSMD1Q99460 953 aa26.63■■□□□ 1.85
TRIM54-201ENST00000296098 NDST4Q9H3R1 872 aa26.63■■□□□ 1.85
TRIM54-201ENST00000296098 PSMD14O00487 310 aa26.62■■□□□ 1.85
TRIM54-201ENST00000296098 MED24O75448 989 aa26.62■■□□□ 1.85
TRIM54-201ENST00000296098 RAD17O75943 681 aa26.62■■□□□ 1.85
TRIM54-201ENST00000296098 TAL1P17542 331 aaPredicted RBP26.62■■□□□ 1.85
TRIM54-201ENST00000296098 ERMNQ8TAM6 284 aa26.62■■□□□ 1.85
TRIM54-201ENST00000296098 LENG9Q96B70 501 aa26.62■■□□□ 1.85
TRIM54-201ENST00000296098 OPLAHO14841 1288 aa26.61■■□□□ 1.85
TRIM54-201ENST00000296098 ABL1P00519 1130 aa26.61■■□□□ 1.85
TRIM54-201ENST00000296098 VIL1P09327 827 aaKnown RBP26.61■■□□□ 1.85
TRIM54-201ENST00000296098 STAT2P52630 851 aa26.61■■□□□ 1.85
TRIM54-201ENST00000296098 TUBB2AQ13885 445 aa26.61■■□□□ 1.85
TRIM54-201ENST00000296098 LARGE2Q8N3Y3 721 aa26.61■■□□□ 1.85
TRIM54-201ENST00000296098 GMLQ99445 158 aa26.61■■□□□ 1.85
TRIM54-201ENST00000296098 TUBB2BQ9BVA1 445 aa26.61■■□□□ 1.85
TRIM54-201ENST00000296098 GOPCQ9HD26 462 aa26.61■■□□□ 1.85
TRIM54-201ENST00000296098 COL4A5P29400 1685 aa26.61■■□□□ 1.85
TRIM54-201ENST00000296098 ECE1P42892 770 aa26.61■■□□□ 1.85
TRIM54-201ENST00000296098 KIF4BQ2VIQ3 1234 aa26.61■■□□□ 1.85
TRIM54-201ENST00000296098 ZCWPW2Q504Y3 356 aa26.61■■□□□ 1.85
TRIM54-201ENST00000296098 ARGLU1Q9NWB6 273 aaPredicted RBP26.61■■□□□ 1.85
TRIM54-201ENST00000296098 CNTNAP1P78357 1384 aa26.61■■□□□ 1.85
TRIM54-201ENST00000296098 FAM86B1E9PN63 330 aa26.6■■□□□ 1.85
TRIM54-201ENST00000296098 FAM86B2P0C5J1 330 aa26.6■■□□□ 1.85
TRIM54-201ENST00000296098 CYP11B2P19099 503 aa26.6■■□□□ 1.85
TRIM54-201ENST00000296098 CYLC1P35663 651 aaPredicted RBP26.6■■□□□ 1.85
TRIM54-201ENST00000296098 NCAPH2Q6IBW4 605 aa26.6■■□□□ 1.85
TRIM54-201ENST00000296098 RSRC2Q7L4I2 434 aaKnown RBP26.6■■□□□ 1.85
TRIM54-201ENST00000296098 OGFOD1Q8N543 542 aa26.6■■□□□ 1.85
TRIM54-201ENST00000296098 NAPGQ99747 312 aaPredicted RBP26.6■■□□□ 1.85
TRIM54-201ENST00000296098 CDC23Q9UJX2 597 aa26.6■■□□□ 1.85
TRIM54-201ENST00000296098 SIK3Q9Y2K2 1263 aa26.6■■□□□ 1.85
TRIM54-201ENST00000296098 POTEFA5A3E0 1075 aa26.6■■□□□ 1.85
TRIM54-201ENST00000296098 PIK3CDO00329 1044 aa26.6■■□□□ 1.85
TRIM54-201ENST00000296098 POTEIP0CG38 1075 aa26.6■■□□□ 1.85
TRIM54-201ENST00000296098 HOXA13P31271 388 aaPredicted RBP26.6■■□□□ 1.85
TRIM54-201ENST00000296098 CIITAP33076 1130 aa26.6■■□□□ 1.85
TRIM54-201ENST00000296098 CLCN6P51797 869 aa26.6■■□□□ 1.85
TRIM54-201ENST00000296098 KRT83P78385 493 aa26.6■■□□□ 1.85
TRIM54-201ENST00000296098 TRAF1Q13077 416 aa26.6■■□□□ 1.85
TRIM54-201ENST00000296098 SPDYE2Q495Y8 402 aa26.6■■□□□ 1.85
TRIM54-201ENST00000296098 TEX35Q5T0J7 233 aa26.6■■□□□ 1.85
TRIM54-201ENST00000296098 POTEGQ6S5H5 508 aa26.6■■□□□ 1.85
TRIM54-201ENST00000296098 POTEEQ6S8J3 1075 aa26.6■■□□□ 1.85
TRIM54-201ENST00000296098 GOLGA1Q92805 767 aa26.6■■□□□ 1.85
TRIM54-201ENST00000296098 FAM20AQ96MK3 541 aa26.6■■□□□ 1.85
TRIM54-201ENST00000296098 ZBTB21Q9ULJ3 1066 aa26.6■■□□□ 1.85
TRIM54-201ENST00000296098 TMX2Q9Y320 296 aa26.6■■□□□ 1.85
TRIM54-201ENST00000296098 STK24Q9Y6E0 443 aa26.6■■□□□ 1.85
TRIM54-201ENST00000296098 KIF13BQ9NQT8 1826 aa26.6■■□□□ 1.85
TRIM54-201ENST00000296098 HERVK_113P62684 666 aa26.59■■□□□ 1.85
TRIM54-201ENST00000296098 CCDC170Q8IYT3 715 aa26.59■■□□□ 1.85
TRIM54-201ENST00000296098 ACER1Q8TDN7 264 aa26.59■■□□□ 1.85
TRIM54-201ENST00000296098 HAUS4Q9H6D7 363 aa26.59■■□□□ 1.85
TRIM54-201ENST00000296098 SLC12A3P55017 1021 aa26.58■■□□□ 1.85
TRIM54-201ENST00000296098 ZNF277Q9NRM2 450 aaPredicted RBP26.58■■□□□ 1.85
TRIM54-201ENST00000296098 PCDHA2Q9Y5H9 948 aa26.58■■□□□ 1.85
TRIM54-201ENST00000296098 PITPNM2Q9BZ72 1349 aa26.58■■□□□ 1.85
TRIM54-201ENST00000296098 NPHP3-ACAD11A0A0J9YXS1 232 aa26.58■■□□□ 1.85
TRIM54-201ENST00000296098 KRT18P05783 430 aaKnown RBP26.58■■□□□ 1.85
TRIM54-201ENST00000296098 CDK17Q00537 523 aa26.58■■□□□ 1.85
TRIM54-201ENST00000296098 FKBP3Q00688 224 aaKnown RBP26.58■■□□□ 1.85
TRIM54-201ENST00000296098 KIAA1755Q5JYT7 1200 aa26.58■■□□□ 1.85
TRIM54-201ENST00000296098 FAM83BQ5T0W9 1011 aa26.58■■□□□ 1.85
TRIM54-201ENST00000296098 CCDC84Q86UT8 332 aaPredicted RBP26.58■■□□□ 1.85
TRIM54-201ENST00000296098 CATSPER3Q86XQ3 398 aa26.58■■□□□ 1.85
TRIM54-201ENST00000296098 NHEJ1Q9H9Q4 299 aaPredicted RBP26.58■■□□□ 1.85
TRIM54-201ENST00000296098 ZNF446Q9NWS9 450 aa26.58■■□□□ 1.85
TRIM54-201ENST00000296098 TBC1D7Q9P0N9 293 aa26.58■■□□□ 1.85
TRIM54-201ENST00000296098 FRMD3A2A2Y4 597 aa26.57■■□□□ 1.84
TRIM54-201ENST00000296098 CYP3A4P08684 503 aa26.57■■□□□ 1.84
TRIM54-201ENST00000296098 RPA1P27694 616 aa26.57■■□□□ 1.84
TRIM54-201ENST00000296098 SRGAP1Q7Z6B7 1085 aa26.57■■□□□ 1.84
TRIM54-201ENST00000296098 TEX2Q8IWB9 1127 aa26.57■■□□□ 1.84
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms