RNA–Protein interactions for RNA: ENST00000295550.8

COL6A3-201, Transcript of collagen type VI alpha 3 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL6A3, Length 10,749 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-201ENST00000295550 NEK8Q86SG6 692 aa10.7□□□□□ -0.7
COL6A3-201ENST00000295550 TGFBRAP1Q8WUH2 860 aa10.7□□□□□ -0.7
COL6A3-201ENST00000295550 MAML1Q92585 1016 aa10.7□□□□□ -0.7
COL6A3-201ENST00000295550 KRT82Q9NSB4 513 aa10.7□□□□□ -0.7
COL6A3-201ENST00000295550 TRMT10CQ7L0Y3 403 aaKnown RBP10.7□□□□□ -0.7
COL6A3-201ENST00000295550 PNMA1Q8ND90 353 aa10.7□□□□□ -0.7
COL6A3-201ENST00000295550 PUS7LQ9H0K6 701 aaKnown RBP10.7□□□□□ -0.7
COL6A3-201ENST00000295550 PACSIN2Q9UNF0 486 aaPredicted RBP10.7□□□□□ -0.7
COL6A3-201ENST00000295550 MYOCDQ8IZQ8 938 aa10.69□□□□□ -0.7
COL6A3-201ENST00000295550 SDR42E1Q8WUS8 393 aa10.69□□□□□ -0.7
COL6A3-201ENST00000295550 SPZ1Q9BXG8 430 aa10.69□□□□□ -0.7
COL6A3-201ENST00000295550 DPH5Q9H2P9 285 aa10.69□□□□□ -0.7
COL6A3-201ENST00000295550 CHRNDQ07001 517 aa10.69□□□□□ -0.7
COL6A3-201ENST00000295550 SKA2Q8WVK7 121 aaPredicted RBP10.69□□□□□ -0.7
COL6A3-201ENST00000295550 RUNDC3BQ96NL0 473 aa10.69□□□□□ -0.7
COL6A3-201ENST00000295550 PTPN22Q9Y2R2 807 aa10.69□□□□□ -0.7
COL6A3-201ENST00000295550 WDR17Q8IZU2 1322 aa10.69□□□□□ -0.7
COL6A3-201ENST00000295550 GARSP41250 739 aaKnown RBP10.69□□□□□ -0.7
COL6A3-201ENST00000295550 KIF11P52732 1056 aa10.69□□□□□ -0.7
COL6A3-201ENST00000295550 ZNF658Q5TYW1 1059 aaPredicted RBP10.69□□□□□ -0.7
COL6A3-201ENST00000295550 NCAPH2Q6IBW4 605 aa10.69□□□□□ -0.7
COL6A3-201ENST00000295550 RIOK1Q9BRS2 568 aaKnown RBP10.69□□□□□ -0.7
COL6A3-201ENST00000295550 MAD1L1Q9Y6D9 718 aa10.69□□□□□ -0.7
COL6A3-201ENST00000295550 A0A087WUV0 522 aaPredicted RBP10.69□□□□□ -0.7
COL6A3-201ENST00000295550 CD19P15391 556 aa10.69□□□□□ -0.7
COL6A3-201ENST00000295550 MCTP2Q6DN12 878 aa10.69□□□□□ -0.7
COL6A3-201ENST00000295550 BUB1O43683 1085 aa10.69□□□□□ -0.7
COL6A3-201ENST00000295550 SEC31AO94979 1220 aaKnown RBP10.69□□□□□ -0.7
COL6A3-201ENST00000295550 ARHGAP44Q17R89 818 aa10.69□□□□□ -0.7
COL6A3-201ENST00000295550 DYDC2Q96IM9 177 aa10.69□□□□□ -0.7
COL6A3-201ENST00000295550 PGBD1Q96JS3 809 aa10.69□□□□□ -0.7
COL6A3-201ENST00000295550 TEKT2Q9UIF3 430 aa10.69□□□□□ -0.7
COL6A3-201ENST00000295550 SRPRBQ9Y5M8 271 aaKnown RBP10.69□□□□□ -0.7
COL6A3-201ENST00000295550 ZNF579Q8NAF0 562 aaKnown RBP10.69□□□□□ -0.7
COL6A3-201ENST00000295550 KLHL29Q96CT2 875 aa10.69□□□□□ -0.7
COL6A3-201ENST00000295550 IPO11Q9UI26 975 aaKnown RBP10.69□□□□□ -0.7
COL6A3-201ENST00000295550 MYH15Q9Y2K3 1946 aa10.69□□□□□ -0.7
COL6A3-201ENST00000295550 USP17L12C9JPN9 530 aa10.69□□□□□ -0.7
COL6A3-201ENST00000295550 USP17L21D6R901 530 aa10.69□□□□□ -0.7
COL6A3-201ENST00000295550 KRT19P08727 400 aa10.69□□□□□ -0.7
COL6A3-201ENST00000295550 BBOF1Q8ND07 529 aa10.69□□□□□ -0.7
COL6A3-201ENST00000295550 ZC3H12CQ9C0D7 883 aaKnown RBP10.69□□□□□ -0.7
COL6A3-201ENST00000295550 THAP9Q9H5L6 903 aa10.69□□□□□ -0.7
COL6A3-201ENST00000295550 CD2APQ9Y5K6 639 aa10.69□□□□□ -0.7
COL6A3-201ENST00000295550 TECPR2O15040 1411 aa10.69□□□□□ -0.7
COL6A3-201ENST00000295550 PRPF3O43395 683 aaKnown RBP10.69□□□□□ -0.7
COL6A3-201ENST00000295550 IGKV5-2P06315 115 aa10.69□□□□□ -0.7
COL6A3-201ENST00000295550 SLC1A4P43007 532 aa10.69□□□□□ -0.7
COL6A3-201ENST00000295550 GPBP1Q86WP2 473 aa10.69□□□□□ -0.7
COL6A3-201ENST00000295550 MAPKAPK5Q8IW41 473 aa10.69□□□□□ -0.7
COL6A3-201ENST00000295550 SLFN12Q8IYM2 578 aa10.69□□□□□ -0.7
COL6A3-201ENST00000295550 ARHGEF10LQ9HCE6 1279 aa10.69□□□□□ -0.7
COL6A3-201ENST00000295550 BIN2Q9UBW5 565 aaPredicted RBP10.69□□□□□ -0.7
COL6A3-201ENST00000295550 KMT5BQ4FZB7 885 aa10.69□□□□□ -0.7
COL6A3-201ENST00000295550 CCNL1Q9UK58 526 aaPredicted RBP10.69□□□□□ -0.7
COL6A3-201ENST00000295550 TRIM37O94972 964 aa10.68□□□□□ -0.7
COL6A3-201ENST00000295550 YWHAGP61981 247 aaKnown RBP eCLIP10.68□□□□□ -0.7
COL6A3-201ENST00000295550 SNX1Q13596 522 aa10.68□□□□□ -0.7
COL6A3-201ENST00000295550 DDX17Q92841 729 aaKnown RBP10.68□□□□□ -0.7
COL6A3-201ENST00000295550 CTNND1O60716 968 aaKnown RBP10.68□□□□□ -0.7
COL6A3-201ENST00000295550 INHBAP08476 426 aa10.68□□□□□ -0.7
COL6A3-201ENST00000295550 RINT1Q6NUQ1 792 aa10.68□□□□□ -0.7
COL6A3-201ENST00000295550 MMS22LQ6ZRQ5 1243 aa10.68□□□□□ -0.7
COL6A3-201ENST00000295550 TRIM42Q8IWZ5 723 aa10.68□□□□□ -0.7
COL6A3-201ENST00000295550 GDAP1Q8TB36 358 aa10.68□□□□□ -0.7
COL6A3-201ENST00000295550 ARMC9Q7Z3E5 817 aa10.68□□□□□ -0.7
COL6A3-201ENST00000295550 SH3GLB2Q9NR46 395 aa10.68□□□□□ -0.7
COL6A3-201ENST00000295550 NOC2LQ9Y3T9 749 aaKnown RBP10.68□□□□□ -0.7
COL6A3-201ENST00000295550 TMEM94Q12767 1356 aa10.68□□□□□ -0.7
COL6A3-201ENST00000295550 SOWAHDA6NJG2 315 aa10.68□□□□□ -0.7
COL6A3-201ENST00000295550 MCF2P10911 925 aa10.68□□□□□ -0.7
COL6A3-201ENST00000295550 NT5C2P49902 561 aa10.68□□□□□ -0.7
COL6A3-201ENST00000295550 EXOC4Q96A65 974 aa10.68□□□□□ -0.7
COL6A3-201ENST00000295550 NLRC4Q9NPP4 1024 aa10.68□□□□□ -0.7
COL6A3-201ENST00000295550 ZNF277Q9NRM2 450 aaPredicted RBP10.68□□□□□ -0.7
COL6A3-201ENST00000295550 NOP56O00567 594 aaKnown RBP10.68□□□□□ -0.7
COL6A3-201ENST00000295550 HP1BP3Q5SSJ5 553 aaPredicted RBP10.68□□□□□ -0.7
COL6A3-201ENST00000295550 C6orf118Q5T5N4 469 aa10.68□□□□□ -0.7
COL6A3-201ENST00000295550 CNOT6LQ96LI5 555 aaKnown RBP10.68□□□□□ -0.7
COL6A3-201ENST00000295550 ATP8A2Q9NTI2 1148 aa10.68□□□□□ -0.7
COL6A3-201ENST00000295550 STAT1P42224 750 aa10.68□□□□□ -0.7
COL6A3-201ENST00000295550 DYMQ7RTS9 669 aa10.68□□□□□ -0.7
COL6A3-201ENST00000295550 ACTR5Q9H9F9 607 aaPredicted RBP10.68□□□□□ -0.7
COL6A3-201ENST00000295550 BZW2Q9Y6E2 419 aaKnown RBP10.68□□□□□ -0.7
COL6A3-201ENST00000295550 FER1L4A9Z1Z3 1794 aa10.68□□□□□ -0.7
COL6A3-201ENST00000295550 PNMA6AP0CW24 399 aaPredicted RBP10.68□□□□□ -0.7
COL6A3-201ENST00000295550 EPHB4P54760 987 aa10.68□□□□□ -0.7
COL6A3-201ENST00000295550 FMR1NBQ8N0W7 255 aaPredicted RBP10.68□□□□□ -0.7
COL6A3-201ENST00000295550 WDR3Q9UNX4 943 aaKnown RBP eCLIP10.68□□□□□ -0.7
COL6A3-201ENST00000295550 MFAP3LO75121 409 aa10.68□□□□□ -0.7
COL6A3-201ENST00000295550 GUCY2CP25092 1073 aa10.68□□□□□ -0.7
COL6A3-201ENST00000295550 ART3Q13508 389 aa10.68□□□□□ -0.7
COL6A3-201ENST00000295550 POLR3CQ9BUI4 534 aaPredicted RBP10.68□□□□□ -0.7
COL6A3-201ENST00000295550 ERVV-1B6SEH8 477 aa10.67□□□□□ -0.7
COL6A3-201ENST00000295550 PFDN6O15212 129 aa10.67□□□□□ -0.7
COL6A3-201ENST00000295550 CYP2J2P51589 502 aa10.67□□□□□ -0.7
COL6A3-201ENST00000295550 NME8Q8N427 588 aa10.67□□□□□ -0.7
COL6A3-201ENST00000295550 TUBGCP2Q9BSJ2 902 aa10.67□□□□□ -0.7
COL6A3-201ENST00000295550 KIFC3Q9BVG8 833 aa10.67□□□□□ -0.7
COL6A3-201ENST00000295550 TNS3Q68CZ2 1445 aa10.67□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 19.8 ms