RNA–Protein interactions for RNA: ENST00000292535.11

CUX1-201, Transcript of cut like homeobox 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CUX1, Length 13,747 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-201ENST00000292535 LRRC4Q9HBW1 653 aa10.08□□□□□ -0.8
CUX1-201ENST00000292535 ANGPTL2Q9UKU9 493 aa10.08□□□□□ -0.8
CUX1-201ENST00000292535 CHL1O00533 1208 aa10.08□□□□□ -0.8
CUX1-201ENST00000292535 RBM6P78332 1123 aaKnown RBP10.08□□□□□ -0.8
CUX1-201ENST00000292535 ZNF594Q96JF6 807 aaPredicted RBP10.08□□□□□ -0.8
CUX1-201ENST00000292535 GPBP1L1Q9HC44 474 aaPredicted RBP10.08□□□□□ -0.8
CUX1-201ENST00000292535 GCNT4Q9P109 453 aa10.08□□□□□ -0.8
CUX1-201ENST00000292535 MAST1Q9Y2H9 1570 aa10.08□□□□□ -0.8
CUX1-201ENST00000292535 TTLL1O95922 423 aa10.08□□□□□ -0.8
CUX1-201ENST00000292535 EEF1DP29692 281 aaKnown RBP10.08□□□□□ -0.8
CUX1-201ENST00000292535 PTK2BQ14289 1009 aa10.08□□□□□ -0.8
CUX1-201ENST00000292535 RDH13Q8NBN7 331 aa10.08□□□□□ -0.8
CUX1-201ENST00000292535 AK8Q96MA6 479 aa10.08□□□□□ -0.8
CUX1-201ENST00000292535 CENPKQ9BS16 269 aa10.08□□□□□ -0.8
CUX1-201ENST00000292535 CFAP43Q8NDM7 1665 aa10.08□□□□□ -0.8
CUX1-201ENST00000292535 FAM95CA0A1B0GW59 222 aa10.07□□□□□ -0.8
CUX1-201ENST00000292535 ATP5JP18859 108 aa10.07□□□□□ -0.8
CUX1-201ENST00000292535 ELMOD1Q8N336 334 aa10.07□□□□□ -0.8
CUX1-201ENST00000292535 PAWRQ96IZ0 340 aaKnown RBP10.07□□□□□ -0.8
CUX1-201ENST00000292535 NEUROG2Q9H2A3 272 aa10.07□□□□□ -0.8
CUX1-201ENST00000292535 SLC39A2Q9NP94 309 aa10.07□□□□□ -0.8
CUX1-201ENST00000292535 UHRF1BP1Q6BDS2 1440 aa10.07□□□□□ -0.8
CUX1-201ENST00000292535 hCG_1984214I3L0E3 225 aa10.07□□□□□ -0.8
CUX1-201ENST00000292535 SCNN1DP51172 638 aa10.07□□□□□ -0.8
CUX1-201ENST00000292535 YWHAHQ04917 246 aaPredicted RBP10.07□□□□□ -0.8
CUX1-201ENST00000292535 ZSCAN26Q16670 478 aa10.07□□□□□ -0.8
CUX1-201ENST00000292535 SPATA1Q5VX52 437 aa10.07□□□□□ -0.8
CUX1-201ENST00000292535 CAPN12Q6ZSI9 719 aa10.07□□□□□ -0.8
CUX1-201ENST00000292535 XPO4Q9C0E2 1151 aaKnown RBP10.07□□□□□ -0.8
CUX1-201ENST00000292535 CIITAP33076 1130 aa10.07□□□□□ -0.8
CUX1-201ENST00000292535 SNX19Q92543 992 aa10.07□□□□□ -0.8
CUX1-201ENST00000292535 ZNF189O75820 626 aaPredicted RBP10.07□□□□□ -0.8
CUX1-201ENST00000292535 PSMC2P35998 433 aaKnown RBP10.07□□□□□ -0.8
CUX1-201ENST00000292535 SUCLG2Q96I99 432 aa10.07□□□□□ -0.8
CUX1-201ENST00000292535 PTGDRQ13258 359 aa10.07□□□□□ -0.8
CUX1-201ENST00000292535 NLGN1Q8N2Q7 840 aa10.07□□□□□ -0.8
CUX1-201ENST00000292535 UBE2Q2Q8WVN8 375 aa10.07□□□□□ -0.8
CUX1-201ENST00000292535 GSDMAQ96QA5 445 aa10.07□□□□□ -0.8
CUX1-201ENST00000292535 EFCAB14O75071 495 aa10.07□□□□□ -0.8
CUX1-201ENST00000292535 FBXW4P57775 412 aa10.07□□□□□ -0.8
CUX1-201ENST00000292535 EHHADHQ08426 723 aa10.07□□□□□ -0.8
CUX1-201ENST00000292535 CALR3Q96L12 384 aaKnown RBP10.07□□□□□ -0.8
CUX1-201ENST00000292535 CCDC151A5D8V7 595 aa10.07□□□□□ -0.8
CUX1-201ENST00000292535 RECQLP46063 649 aaPredicted RBP10.07□□□□□ -0.8
CUX1-201ENST00000292535 PACSIN2Q9UNF0 486 aaPredicted RBP10.07□□□□□ -0.8
CUX1-201ENST00000292535 FAM98CQ17RN3 349 aaKnown RBP10.07□□□□□ -0.8
CUX1-201ENST00000292535 TAF1BQ53T94 588 aaPredicted RBP10.07□□□□□ -0.8
CUX1-201ENST00000292535 ACCSQ96QU6 501 aa10.07□□□□□ -0.8
CUX1-201ENST00000292535 WDR11Q9BZH6 1224 aa10.07□□□□□ -0.8
CUX1-201ENST00000292535 POC1B-GALNT4F8VUJ3 575 aa10.07□□□□□ -0.8
CUX1-201ENST00000292535 EIF3DO15371 548 aaKnown RBP eCLIP10.07□□□□□ -0.8
CUX1-201ENST00000292535 PFDN1O60925 122 aa10.07□□□□□ -0.8
CUX1-201ENST00000292535 ECEL1O95672 775 aa10.07□□□□□ -0.8
CUX1-201ENST00000292535 SOX5P35711 763 aa10.07□□□□□ -0.8
CUX1-201ENST00000292535 ACBD5Q5T8D3 534 aaPredicted RBP10.07□□□□□ -0.8
CUX1-201ENST00000292535 ZBTB18Q99592 522 aa10.07□□□□□ -0.8
CUX1-201ENST00000292535 DAAM1Q9Y4D1 1078 aa10.07□□□□□ -0.8
CUX1-201ENST00000292535 H3BRJ5 948 aa10.07□□□□□ -0.8
CUX1-201ENST00000292535 CPA1P15085 419 aa10.07□□□□□ -0.8
CUX1-201ENST00000292535 GCKP35557 465 aa10.07□□□□□ -0.8
CUX1-201ENST00000292535 TRIM59Q8IWR1 403 aa10.07□□□□□ -0.8
CUX1-201ENST00000292535 SYMPKQ92797 1274 aaKnown RBP10.07□□□□□ -0.8
CUX1-201ENST00000292535 TRIM33Q9UPN9 1127 aa10.07□□□□□ -0.8
CUX1-201ENST00000292535 PHLPP2Q6ZVD8 1323 aa10.06□□□□□ -0.8
CUX1-201ENST00000292535 IREB2P48200 963 aaKnown RBP10.06□□□□□ -0.8
CUX1-201ENST00000292535 FLOT2Q14254 428 aa10.06□□□□□ -0.8
CUX1-201ENST00000292535 FAM26FQ5R3K3 315 aa10.06□□□□□ -0.8
CUX1-201ENST00000292535 GIMAP8Q8ND71 665 aaPredicted RBP10.06□□□□□ -0.8
CUX1-201ENST00000292535 CEP19Q96LK0 163 aa10.06□□□□□ -0.8
CUX1-201ENST00000292535 TUBGCP2Q9BSJ2 902 aa10.06□□□□□ -0.8
CUX1-201ENST00000292535 PPP2R2CQ9Y2T4 447 aa10.06□□□□□ -0.8
CUX1-201ENST00000292535 TCP10L2B9ZVM9 353 aa10.06□□□□□ -0.8
CUX1-201ENST00000292535 ZBTB7BO15156 539 aaPredicted RBP10.06□□□□□ -0.8
CUX1-201ENST00000292535 EPHB4P54760 987 aa10.06□□□□□ -0.8
CUX1-201ENST00000292535 FAM227BQ96M60 508 aa10.06□□□□□ -0.8
CUX1-201ENST00000292535 ARHGEF12Q9NZN5 1544 aa10.06□□□□□ -0.8
CUX1-201ENST00000292535 PI4K2BQ8TCG2 481 aa10.06□□□□□ -0.8
CUX1-201ENST00000292535 FGFR1OP2Q9NVK5 253 aa10.06□□□□□ -0.8
CUX1-201ENST00000292535 PCDHA4Q9UN74 947 aa10.06□□□□□ -0.8
CUX1-201ENST00000292535 IQANK1A0A1B0GTG1 560 aa10.06□□□□□ -0.8
CUX1-201ENST00000292535 DNAJC24Q6P3W2 148 aa10.06□□□□□ -0.8
CUX1-201ENST00000292535 ZNF274Q96GC6 653 aaPredicted RBP10.06□□□□□ -0.8
CUX1-201ENST00000292535 SERPINI1Q99574 410 aa10.06□□□□□ -0.8
CUX1-201ENST00000292535 TRAIPQ9BWF2 469 aa10.06□□□□□ -0.8
CUX1-201ENST00000292535 AMNQ9BXJ7 453 aa10.06□□□□□ -0.8
CUX1-201ENST00000292535 LEMD3Q9Y2U8 911 aa10.06□□□□□ -0.8
CUX1-201ENST00000292535 ABCC12Q96J65 1359 aa10.06□□□□□ -0.8
CUX1-201ENST00000292535 COL17A1Q9UMD9 1497 aaPredicted RBP10.06□□□□□ -0.8
CUX1-201ENST00000292535 TAC1P20366 129 aa10.06□□□□□ -0.8
CUX1-201ENST00000292535 RAP1GDS1P52306 607 aa10.06□□□□□ -0.8
CUX1-201ENST00000292535 RWDD4Q6NW29 188 aaKnown RBP10.06□□□□□ -0.8
CUX1-201ENST00000292535 ASPSCR1Q9BZE9 553 aa10.06□□□□□ -0.8
CUX1-201ENST00000292535 PPEF1O14829 653 aaPredicted RBP10.06□□□□□ -0.8
CUX1-201ENST00000292535 JAK2O60674 1132 aa10.06□□□□□ -0.8
CUX1-201ENST00000292535 FKBP3Q00688 224 aaKnown RBP10.06□□□□□ -0.8
CUX1-201ENST00000292535 TSPY1Q01534 308 aa10.06□□□□□ -0.8
CUX1-201ENST00000292535 GLE1Q53GS7 698 aaKnown RBP10.06□□□□□ -0.8
CUX1-201ENST00000292535 SCG3Q8WXD2 468 aaKnown RBP10.06□□□□□ -0.8
CUX1-201ENST00000292535 DHTKD1Q96HY7 919 aaPredicted RBP10.06□□□□□ -0.8
CUX1-201ENST00000292535 THRAP3Q9Y2W1 955 aaKnown RBP10.06□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 20 ms