RNA–Protein interactions for RNA: ENST00000272322.8

VPS54-201, Transcript of VPS54, GARP complex subunit, humanhuman

APPRIS P3 TSL 5 BASIC

Gene VPS54, Length 3,463 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-201ENST00000272322 HDAC7Q8WUI4 952 aa18.44■□□□□ 0.54
VPS54-201ENST00000272322 TBC1D5Q92609 795 aa18.44■□□□□ 0.54
VPS54-201ENST00000272322 P2RX7Q99572 595 aaKnown RBP18.44■□□□□ 0.54
VPS54-201ENST00000272322 SH2D3AQ9BRG2 576 aa18.44■□□□□ 0.54
VPS54-201ENST00000272322 FAN1Q9Y2M0 1017 aa18.44■□□□□ 0.54
VPS54-201ENST00000272322 AHDC1Q5TGY3 1603 aaPredicted RBP18.44■□□□□ 0.54
VPS54-201ENST00000272322 ZBTB39O15060 712 aa18.44■□□□□ 0.54
VPS54-201ENST00000272322 ZBTB5O15062 677 aa18.44■□□□□ 0.54
VPS54-201ENST00000272322 ZNF76P36508 570 aa18.44■□□□□ 0.54
VPS54-201ENST00000272322 RAPGEF1Q13905 1077 aa18.44■□□□□ 0.54
VPS54-201ENST00000272322 CDC37Q16543 378 aaPredicted RBP18.44■□□□□ 0.54
VPS54-201ENST00000272322 BEND6Q5SZJ8 279 aaPredicted RBP18.44■□□□□ 0.54
VPS54-201ENST00000272322 KSR1Q8IVT5 923 aa18.44■□□□□ 0.54
VPS54-201ENST00000272322 CCDC151A5D8V7 595 aa18.44■□□□□ 0.54
VPS54-201ENST00000272322 TCP10L2B9ZVM9 353 aa18.44■□□□□ 0.54
VPS54-201ENST00000272322 ACTN1P12814 892 aa18.44■□□□□ 0.54
VPS54-201ENST00000272322 KIF11P52732 1056 aa18.44■□□□□ 0.54
VPS54-201ENST00000272322 DCAF17Q5H9S7 520 aaPredicted RBP18.44■□□□□ 0.54
VPS54-201ENST00000272322 PPP1R3FQ6ZSY5 799 aaPredicted RBP18.44■□□□□ 0.54
VPS54-201ENST00000272322 UNC13DQ70J99 1090 aa18.44■□□□□ 0.54
VPS54-201ENST00000272322 FAM114A1Q8IWE2 563 aa18.44■□□□□ 0.54
VPS54-201ENST00000272322 MYOCDQ8IZQ8 938 aa18.44■□□□□ 0.54
VPS54-201ENST00000272322 PIGOQ8TEQ8 1089 aa18.44■□□□□ 0.54
VPS54-201ENST00000272322 MS4A14Q96JA4 679 aa18.44■□□□□ 0.54
VPS54-201ENST00000272322 ATP6V0A2Q9Y487 856 aa18.44■□□□□ 0.54
VPS54-201ENST00000272322 CLIC2O15247 247 aa18.43■□□□□ 0.54
VPS54-201ENST00000272322 MAGEA1P43355 309 aa18.43■□□□□ 0.54
VPS54-201ENST00000272322 GABPAQ06546 454 aa18.43■□□□□ 0.54
VPS54-201ENST00000272322 SECISBP2LQ93073 1101 aaKnown RBP18.43■□□□□ 0.54
VPS54-201ENST00000272322 COA1Q9GZY4 146 aa18.43■□□□□ 0.54
VPS54-201ENST00000272322 RGL1Q9NZL6 768 aa18.43■□□□□ 0.54
VPS54-201ENST00000272322 ROBO3Q96MS0 1386 aa18.43■□□□□ 0.54
VPS54-201ENST00000272322 SCN7AQ01118 1682 aa18.43■□□□□ 0.54
VPS54-201ENST00000272322 GAKO14976 1311 aa18.43■□□□□ 0.54
VPS54-201ENST00000272322 SALL4Q9UJQ4 1053 aa18.43■□□□□ 0.54
VPS54-201ENST00000272322 LRRIQ3A6PVS8 624 aaPredicted RBP18.43■□□□□ 0.54
VPS54-201ENST00000272322 RSPH10B2B2RC85 870 aa18.43■□□□□ 0.54
VPS54-201ENST00000272322 ANKRD65E5RJM6 399 aa18.43■□□□□ 0.54
VPS54-201ENST00000272322 APBA3O96018 575 aa18.43■□□□□ 0.54
VPS54-201ENST00000272322 CFBP00751 764 aa18.43■□□□□ 0.54
VPS54-201ENST00000272322 GH2P01242 217 aa18.43■□□□□ 0.54
VPS54-201ENST00000272322 PLA2G4BP0C869 781 aa18.43■□□□□ 0.54
VPS54-201ENST00000272322 RSPH10BP0C881 870 aa18.43■□□□□ 0.54
VPS54-201ENST00000272322 CASP5P51878 434 aa18.43■□□□□ 0.54
VPS54-201ENST00000272322 JAG1P78504 1218 aa18.43■□□□□ 0.54
VPS54-201ENST00000272322 ICA1Q05084 483 aa18.43■□□□□ 0.54
VPS54-201ENST00000272322 DNAJC21Q5F1R6 531 aaKnown RBP18.43■□□□□ 0.54
VPS54-201ENST00000272322 CCDC174Q6PII3 467 aa18.43■□□□□ 0.54
VPS54-201ENST00000272322 LSM14BQ9BX40 385 aaKnown RBP18.43■□□□□ 0.54
VPS54-201ENST00000272322 MED24O75448 989 aa18.42■□□□□ 0.54
VPS54-201ENST00000272322 PRPF6O94906 941 aaKnown RBP18.42■□□□□ 0.54
VPS54-201ENST00000272322 MYBL2P10244 700 aa18.42■□□□□ 0.54
VPS54-201ENST00000272322 CASP8Q14790 479 aa18.42■□□□□ 0.54
VPS54-201ENST00000272322 AOC3Q16853 763 aa18.42■□□□□ 0.54
VPS54-201ENST00000272322 CENPPQ6IPU0 288 aa18.42■□□□□ 0.54
VPS54-201ENST00000272322 FAM53CQ9NYF3 392 aa18.42■□□□□ 0.54
VPS54-201ENST00000272322 A0A0U1RQG5 324 aaPredicted RBP18.42■□□□□ 0.54
VPS54-201ENST00000272322 A0A1W2PQC6 194 aa18.42■□□□□ 0.54
VPS54-201ENST00000272322 KCNA1Q09470 495 aa18.42■□□□□ 0.54
VPS54-201ENST00000272322 SP8Q8IXZ3 490 aa18.42■□□□□ 0.54
VPS54-201ENST00000272322 ADAM21Q9UKJ8 722 aa18.42■□□□□ 0.54
VPS54-201ENST00000272322 PCDHA13Q9Y5I0 950 aa18.42■□□□□ 0.54
VPS54-201ENST00000272322 MYH10P35580 1976 aa18.42■□□□□ 0.54
VPS54-201ENST00000272322 F5H6K3 240 aa18.42■□□□□ 0.54
VPS54-201ENST00000272322 KIF20AO95235 890 aa18.42■□□□□ 0.54
VPS54-201ENST00000272322 KLRC3Q07444 240 aa18.42■□□□□ 0.54
VPS54-201ENST00000272322 MIGA2Q7L4E1 593 aa18.42■□□□□ 0.54
VPS54-201ENST00000272322 TSG101Q99816 390 aa18.42■□□□□ 0.54
VPS54-201ENST00000272322 ANO3Q9BYT9 981 aa18.42■□□□□ 0.54
VPS54-201ENST00000272322 RIC8AQ9NPQ8 531 aa18.42■□□□□ 0.54
VPS54-201ENST00000272322 ADAMTS1Q9UHI8 967 aa18.42■□□□□ 0.54
VPS54-201ENST00000272322 DDX39AO00148 427 aaKnown RBP18.41■□□□□ 0.54
VPS54-201ENST00000272322 ERLIN1O75477 346 aa18.41■□□□□ 0.54
VPS54-201ENST00000272322 FTCDO95954 541 aa18.41■□□□□ 0.54
VPS54-201ENST00000272322 ECE1P42892 770 aa18.41■□□□□ 0.54
VPS54-201ENST00000272322 AMPD2Q01433 879 aa18.41■□□□□ 0.54
VPS54-201ENST00000272322 KRT27Q7Z3Y8 459 aa18.41■□□□□ 0.54
VPS54-201ENST00000272322 FAM133AQ8N9E0 248 aa18.41■□□□□ 0.54
VPS54-201ENST00000272322 CERKQ8TCT0 537 aa18.41■□□□□ 0.54
VPS54-201ENST00000272322 TTYH3Q9C0H2 523 aa18.41■□□□□ 0.54
VPS54-201ENST00000272322 HNRNPH2P55795 449 aaKnown RBP18.41■□□□□ 0.54
VPS54-201ENST00000272322 RDH13Q8NBN7 331 aa18.41■□□□□ 0.54
VPS54-201ENST00000272322 ADAM9Q13443 819 aa18.4■□□□□ 0.54
VPS54-201ENST00000272322 FAM163AQ96GL9 167 aaPredicted RBP18.4■□□□□ 0.54
VPS54-201ENST00000272322 CUEDC2Q9H467 287 aa18.4■□□□□ 0.54
VPS54-201ENST00000272322 LAMB2P55268 1798 aa18.4■□□□□ 0.54
VPS54-201ENST00000272322 MAN2A1Q16706 1144 aa18.4■□□□□ 0.54
VPS54-201ENST00000272322 WHAMMP3Q1A5X7 153 aa18.4■□□□□ 0.54
VPS54-201ENST00000272322 HSP90B2PQ58FF3 399 aa18.4■□□□□ 0.54
VPS54-201ENST00000272322 HDXQ7Z353 690 aa18.4■□□□□ 0.54
VPS54-201ENST00000272322 PCDHB13Q9Y5F0 798 aa18.4■□□□□ 0.54
VPS54-201ENST00000272322 ESYT3A0FGR9 886 aa18.4■□□□□ 0.54
VPS54-201ENST00000272322 CCDC181Q5TID7 509 aa18.4■□□□□ 0.54
VPS54-201ENST00000272322 TRAPPC11Q7Z392 1133 aa18.4■□□□□ 0.54
VPS54-201ENST00000272322 UTP18Q9Y5J1 556 aaKnown RBP eCLIP18.4■□□□□ 0.54
VPS54-201ENST00000272322 CTTNQ14247 550 aaKnown RBP18.39■□□□□ 0.53
VPS54-201ENST00000272322 SH3BP5LQ7L8J4 393 aa18.39■□□□□ 0.53
VPS54-201ENST00000272322 CDAN1Q8IWY9 1227 aa18.39■□□□□ 0.53
VPS54-201ENST00000272322 PACSIN1Q9BY11 444 aa18.39■□□□□ 0.53
VPS54-201ENST00000272322 TRPC5Q9UL62 973 aaPredicted RBP18.39■□□□□ 0.53
Retrieved 100 of 20,778 RNA–protein pairs in 65.1 ms