RNA–Protein interactions for RNA: ENST00000251722.10

USP40-201, Transcript of ubiquitin specific peptidase 40, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene USP40, Length 5,692 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-201ENST00000251722 PTPN12Q05209 780 aaKnown RBP13.89□□□□□ -0.19
USP40-201ENST00000251722 MTX1Q13505 466 aa13.89□□□□□ -0.19
USP40-201ENST00000251722 PROSER3Q2NL68 480 aa13.89□□□□□ -0.19
USP40-201ENST00000251722 PPP1R21Q6ZMI0 780 aa13.89□□□□□ -0.19
USP40-201ENST00000251722 FASTKD5Q7L8L6 764 aaKnown RBP13.89□□□□□ -0.19
USP40-201ENST00000251722 SLC16A10Q8TF71 515 aa13.89□□□□□ -0.19
USP40-201ENST00000251722 UBLCP1Q8WVY7 318 aaPredicted RBP13.89□□□□□ -0.19
USP40-201ENST00000251722 POMGNT1Q8WZA1 660 aa13.89□□□□□ -0.19
USP40-201ENST00000251722 SEC31BQ9NQW1 1179 aa13.89□□□□□ -0.19
USP40-201ENST00000251722 TBC1D7Q9P0N9 293 aa13.89□□□□□ -0.19
USP40-201ENST00000251722 SRGAP2BP0DMP2 458 aa13.89□□□□□ -0.19
USP40-201ENST00000251722 PIK3CAP42336 1068 aa13.89□□□□□ -0.19
USP40-201ENST00000251722 TRIM28Q13263 835 aaKnown RBP13.89□□□□□ -0.19
USP40-201ENST00000251722 KCNV1Q6PIU1 500 aa13.89□□□□□ -0.19
USP40-201ENST00000251722 BARGINQ6ZT62 677 aa13.89□□□□□ -0.19
USP40-201ENST00000251722 GCNAQ96QF7 691 aa13.89□□□□□ -0.19
USP40-201ENST00000251722 CRAMP1Q96RY5 1269 aa13.89□□□□□ -0.19
USP40-201ENST00000251722 MMS19Q96T76 1030 aa13.89□□□□□ -0.19
USP40-201ENST00000251722 KMT5AQ9NQR1 393 aa13.89□□□□□ -0.19
USP40-201ENST00000251722 BATF3Q9NR55 127 aa13.89□□□□□ -0.19
USP40-201ENST00000251722 JAK2O60674 1132 aa13.89□□□□□ -0.19
USP40-201ENST00000251722 CRKP46108 304 aa13.89□□□□□ -0.19
USP40-201ENST00000251722 ADAM9Q13443 819 aa13.89□□□□□ -0.19
USP40-201ENST00000251722 ZNF449Q6P9G9 518 aa13.89□□□□□ -0.19
USP40-201ENST00000251722 CCHCR1Q8TD31 782 aa13.89□□□□□ -0.19
USP40-201ENST00000251722 RSAD2Q8WXG1 361 aa13.89□□□□□ -0.19
USP40-201ENST00000251722 KCNK9Q9NPC2 374 aa13.89□□□□□ -0.19
USP40-201ENST00000251722 ATF5Q9Y2D1 282 aaPredicted RBP13.89□□□□□ -0.19
USP40-201ENST00000251722 SH2B2O14492 632 aaPredicted RBP13.89□□□□□ -0.19
USP40-201ENST00000251722 RAD17O75943 681 aa13.89□□□□□ -0.19
USP40-201ENST00000251722 SLF1Q9BQI6 1058 aa13.89□□□□□ -0.19
USP40-201ENST00000251722 IFIH1Q9BYX4 1025 aaKnown RBP13.89□□□□□ -0.19
USP40-201ENST00000251722 SNX25Q9H3E2 840 aa13.89□□□□□ -0.19
USP40-201ENST00000251722 CBX8Q9HC52 389 aa13.89□□□□□ -0.19
USP40-201ENST00000251722 ZNF189O75820 626 aaPredicted RBP13.88□□□□□ -0.19
USP40-201ENST00000251722 MECOMQ03112 1051 aa13.88□□□□□ -0.19
USP40-201ENST00000251722 PTH1RQ03431 593 aa13.88□□□□□ -0.19
USP40-201ENST00000251722 HERC5Q9UII4 1024 aaKnown RBP13.88□□□□□ -0.19
USP40-201ENST00000251722 DDX41Q9UJV9 622 aaKnown RBP13.88□□□□□ -0.19
USP40-201ENST00000251722 HNRNPDLO14979 420 aaKnown RBP13.88□□□□□ -0.19
USP40-201ENST00000251722 KYAT1Q16773 422 aa13.88□□□□□ -0.19
USP40-201ENST00000251722 RNF169Q8NCN4 708 aa13.88□□□□□ -0.19
USP40-201ENST00000251722 PROCA1Q8NCQ7 364 aaPredicted RBP13.88□□□□□ -0.19
USP40-201ENST00000251722 KIAA1586Q9HCI6 787 aa13.88□□□□□ -0.19
USP40-201ENST00000251722 C1orf167Q5SNV9 1468 aa13.88□□□□□ -0.19
USP40-201ENST00000251722 CDK8P49336 464 aa13.88□□□□□ -0.19
USP40-201ENST00000251722 MYL7Q01449 175 aa13.88□□□□□ -0.19
USP40-201ENST00000251722 SLC39A14Q15043 492 aa13.88□□□□□ -0.19
USP40-201ENST00000251722 RRAGAQ7L523 313 aa13.88□□□□□ -0.19
USP40-201ENST00000251722 TTC39CQ8N584 583 aa13.88□□□□□ -0.19
USP40-201ENST00000251722 BCAP29Q9UHQ4 241 aa13.88□□□□□ -0.19
USP40-201ENST00000251722 CIB2O75838 187 aa13.88□□□□□ -0.19
USP40-201ENST00000251722 NSFP46459 744 aaKnown RBP13.88□□□□□ -0.19
USP40-201ENST00000251722 GEN1Q17RS7 908 aa13.88□□□□□ -0.19
USP40-201ENST00000251722 STAG1Q8WVM7 1258 aa13.88□□□□□ -0.19
USP40-201ENST00000251722 CAMSAP1Q5T5Y3 1602 aa13.87□□□□□ -0.19
USP40-201ENST00000251722 PTPRUQ92729 1446 aa13.87□□□□□ -0.19
USP40-201ENST00000251722 ECE2O60344 883 aa13.87□□□□□ -0.19
USP40-201ENST00000251722 PTGDRQ13258 359 aa13.87□□□□□ -0.19
USP40-201ENST00000251722 ARMCX2Q7L311 632 aa13.87□□□□□ -0.19
USP40-201ENST00000251722 FNBP4Q8N3X1 1017 aaPredicted RBP13.87□□□□□ -0.19
USP40-201ENST00000251722 TBC1D22BQ9NU19 505 aa13.87□□□□□ -0.19
USP40-201ENST00000251722 GINM1Q9NU53 330 aa13.87□□□□□ -0.19
USP40-201ENST00000251722 SLC8A2Q9UPR5 921 aa13.87□□□□□ -0.19
USP40-201ENST00000251722 NDUFB9Q9Y6M9 179 aa13.87□□□□□ -0.19
USP40-201ENST00000251722 C10orf76Q5T2E6 689 aa13.87□□□□□ -0.19
USP40-201ENST00000251722 TTC19Q6DKK2 380 aaPredicted RBP13.87□□□□□ -0.19
USP40-201ENST00000251722 ZC4H2Q9NQZ6 224 aa13.87□□□□□ -0.19
USP40-201ENST00000251722 USTQ9Y2C2 406 aa13.87□□□□□ -0.19
USP40-201ENST00000251722 CYP27B1O15528 508 aa13.87□□□□□ -0.19
USP40-201ENST00000251722 CYP19A1P11511 503 aaPredicted RBP13.87□□□□□ -0.19
USP40-201ENST00000251722 PLCB4Q15147 1175 aa13.87□□□□□ -0.19
USP40-201ENST00000251722 TKFCQ3LXA3 575 aa13.87□□□□□ -0.19
USP40-201ENST00000251722 SYNE4Q8N205 404 aa13.87□□□□□ -0.19
USP40-201ENST00000251722 GPKOWQ92917 476 aaPredicted RBP eCLIP13.87□□□□□ -0.19
USP40-201ENST00000251722 I3L4J1 428 aa13.87□□□□□ -0.19
USP40-201ENST00000251722 GOLGA8HP0CJ92 632 aa13.87□□□□□ -0.19
USP40-201ENST00000251722 GSPT1P15170 499 aaKnown RBP13.87□□□□□ -0.19
USP40-201ENST00000251722 ARHGAP44Q17R89 818 aa13.87□□□□□ -0.19
USP40-201ENST00000251722 CCDC105Q8IYK2 499 aa13.87□□□□□ -0.19
USP40-201ENST00000251722 RAB3IPQ96QF0 476 aaPredicted RBP13.87□□□□□ -0.19
USP40-201ENST00000251722 SEC62Q99442 399 aaKnown RBP13.87□□□□□ -0.19
USP40-201ENST00000251722 ACTR5Q9H9F9 607 aaPredicted RBP13.87□□□□□ -0.19
USP40-201ENST00000251722 SRP68Q9UHB9 627 aaKnown RBP13.87□□□□□ -0.19
USP40-201ENST00000251722 A6NJR5 290 aa13.86□□□□□ -0.19
USP40-201ENST00000251722 ADD1P35611 737 aaKnown RBP13.86□□□□□ -0.19
USP40-201ENST00000251722 STXBP2Q15833 593 aa13.86□□□□□ -0.19
USP40-201ENST00000251722 INTS8Q75QN2 995 aaKnown RBP13.86□□□□□ -0.19
USP40-201ENST00000251722 ARHGAP24Q8N264 748 aa13.86□□□□□ -0.19
USP40-201ENST00000251722 TSC1Q92574 1164 aa13.86□□□□□ -0.19
USP40-201ENST00000251722 STK36Q9NRP7 1315 aa13.86□□□□□ -0.19
USP40-201ENST00000251722 MAPK8IP1Q9UQF2 711 aa13.86□□□□□ -0.19
USP40-201ENST00000251722 DAAM1Q9Y4D1 1078 aa13.86□□□□□ -0.19
USP40-201ENST00000251722 TXNRD1Q16881 649 aa13.86□□□□□ -0.19
USP40-201ENST00000251722 MFSD14CQ5VZR4 134 aa13.86□□□□□ -0.19
USP40-201ENST00000251722 ACRBPQ8NEB7 543 aa13.86□□□□□ -0.19
USP40-201ENST00000251722 M0R2C6 588 aa13.86□□□□□ -0.19
USP40-201ENST00000251722 CDC42EP1Q00587 391 aa13.86□□□□□ -0.19
USP40-201ENST00000251722 MCPH1Q8NEM0 835 aa13.86□□□□□ -0.19
USP40-201ENST00000251722 U2AF1L4Q8WU68 220 aaKnown RBP13.86□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 25.2 ms