RNA–Protein interactions for RNA: ENST00000636907.1

CLN3-252, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,679 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-252ENST00000636907 RRAGCQ9HB90 399 aa19■□□□□ 0.63
CLN3-252ENST00000636907 RNF146Q9NTX7 359 aa19■□□□□ 0.63
CLN3-252ENST00000636907 IGLV3-22A0A075B6J6 115 aa18.99■□□□□ 0.63
CLN3-252ENST00000636907 CXCL11O14625 94 aa18.99■□□□□ 0.63
CLN3-252ENST00000636907 TBX3O15119 743 aa18.99■□□□□ 0.63
CLN3-252ENST00000636907 GTPBP6O43824 516 aaPredicted RBP18.99■□□□□ 0.63
CLN3-252ENST00000636907 PPIL2Q13356 520 aa18.99■□□□□ 0.63
CLN3-252ENST00000636907 MORC3Q14149 939 aa18.99■□□□□ 0.63
CLN3-252ENST00000636907 SLFN12Q8IYM2 578 aa18.99■□□□□ 0.63
CLN3-252ENST00000636907 SYTL5Q8TDW5 730 aaPredicted RBP18.99■□□□□ 0.63
CLN3-252ENST00000636907 CALML4Q96GE6 196 aa18.99■□□□□ 0.63
CLN3-252ENST00000636907 NUDT12Q9BQG2 462 aa18.99■□□□□ 0.63
CLN3-252ENST00000636907 BPIFA3Q9BQP9 254 aa18.99■□□□□ 0.63
CLN3-252ENST00000636907 BLZF1Q9H2G9 400 aa18.99■□□□□ 0.63
CLN3-252ENST00000636907 MAP3K20Q9NYL2 800 aaKnown RBP18.99■□□□□ 0.63
CLN3-252ENST00000636907 RPTORQ8N122 1335 aa18.99■□□□□ 0.63
CLN3-252ENST00000636907 ATP2A1O14983 1001 aa18.98■□□□□ 0.63
CLN3-252ENST00000636907 MSH4O15457 936 aa18.98■□□□□ 0.63
CLN3-252ENST00000636907 AP5Z1O43299 807 aa18.98■□□□□ 0.63
CLN3-252ENST00000636907 RPS6P62753 249 aaKnown RBP18.98■□□□□ 0.63
CLN3-252ENST00000636907 GRB10Q13322 594 aa18.98■□□□□ 0.63
CLN3-252ENST00000636907 CUL4BQ13620 913 aa18.98■□□□□ 0.63
CLN3-252ENST00000636907 LDLRAD1Q5T700 205 aa18.98■□□□□ 0.63
CLN3-252ENST00000636907 SAMD3Q8N6K7 520 aa18.98■□□□□ 0.63
CLN3-252ENST00000636907 TRIML1Q8N9V2 468 aa18.98■□□□□ 0.63
CLN3-252ENST00000636907 PROCA1Q8NCQ7 364 aaPredicted RBP18.98■□□□□ 0.63
CLN3-252ENST00000636907 SNX29Q8TEQ0 813 aa18.98■□□□□ 0.63
CLN3-252ENST00000636907 OPTNQ96CV9 577 aa18.98■□□□□ 0.63
CLN3-252ENST00000636907 PDLIM2Q96JY6 352 aa18.98■□□□□ 0.63
CLN3-252ENST00000636907 PNMA5Q96PV4 448 aa18.98■□□□□ 0.63
CLN3-252ENST00000636907 CUEDC2Q9H467 287 aa18.98■□□□□ 0.63
CLN3-252ENST00000636907 KCNH4Q9UQ05 1017 aa18.98■□□□□ 0.63
CLN3-252ENST00000636907 KRT79Q5XKE5 535 aa18.98■□□□□ 0.63
CLN3-252ENST00000636907 SLC30A10Q6XR72 485 aa18.98■□□□□ 0.63
CLN3-252ENST00000636907 AOPEPQ8N6M6 819 aa18.98■□□□□ 0.63
CLN3-252ENST00000636907 FAM20AQ96MK3 541 aa18.98■□□□□ 0.63
CLN3-252ENST00000636907 ZNF408Q9H9D4 720 aa18.98■□□□□ 0.63
CLN3-252ENST00000636907 BECN2A8MW95 431 aa18.97■□□□□ 0.63
CLN3-252ENST00000636907 HOXA7P31268 230 aaPredicted RBP18.97■□□□□ 0.63
CLN3-252ENST00000636907 RNF207Q6ZRF8 634 aa18.97■□□□□ 0.63
CLN3-252ENST00000636907 TEX13BQ9BXU2 312 aa18.97■□□□□ 0.63
CLN3-252ENST00000636907 MAGEF1Q9HAY2 307 aa18.97■□□□□ 0.63
CLN3-252ENST00000636907 KBTBD4Q9NVX7 518 aa18.97■□□□□ 0.63
CLN3-252ENST00000636907 GOLGA6L19H0YKK7 550 aa18.96■□□□□ 0.63
CLN3-252ENST00000636907 STAT3P40763 770 aa18.96■□□□□ 0.63
CLN3-252ENST00000636907 PLCB2Q00722 1185 aa18.96■□□□□ 0.63
CLN3-252ENST00000636907 SPIRE1Q08AE8 756 aa18.96■□□□□ 0.63
CLN3-252ENST00000636907 CEP55Q53EZ4 464 aa18.96■□□□□ 0.63
CLN3-252ENST00000636907 POTEEQ6S8J3 1075 aa18.96■□□□□ 0.63
CLN3-252ENST00000636907 NSMFQ6X4W1 530 aa18.96■□□□□ 0.63
CLN3-252ENST00000636907 PLA2G4DQ86XP0 818 aa18.96■□□□□ 0.63
CLN3-252ENST00000636907 CDK5RAP3Q96JB5 506 aa18.96■□□□□ 0.63
CLN3-252ENST00000636907 ZFP91Q96JP5 570 aaPredicted RBP18.96■□□□□ 0.63
CLN3-252ENST00000636907 GSDMAQ96QA5 445 aa18.96■□□□□ 0.63
CLN3-252ENST00000636907 TAAR1Q96RJ0 339 aa18.96■□□□□ 0.63
CLN3-252ENST00000636907 RABGAP1Q9Y3P9 1069 aa18.96■□□□□ 0.63
CLN3-252ENST00000636907 FRMPD4Q14CM0 1322 aa18.96■□□□□ 0.63
CLN3-252ENST00000636907 A0A0G2JMZ2 1700 aa18.95■□□□□ 0.62
CLN3-252ENST00000636907 ADCY5O95622 1261 aa18.95■□□□□ 0.62
CLN3-252ENST00000636907 GJA5P36382 358 aa18.95■□□□□ 0.62
CLN3-252ENST00000636907 PLS1Q14651 629 aa18.95■□□□□ 0.62
CLN3-252ENST00000636907 ECM1Q16610 540 aa18.95■□□□□ 0.62
CLN3-252ENST00000636907 TMEM119Q4V9L6 283 aa18.95■□□□□ 0.62
CLN3-252ENST00000636907 IL31RAQ8NI17 732 aa18.95■□□□□ 0.62
CLN3-252ENST00000636907 BLOC1S4Q9NUP1 217 aa18.95■□□□□ 0.62
CLN3-252ENST00000636907 MOGSQ13724 837 aa18.95■□□□□ 0.62
CLN3-252ENST00000636907 BAATQ14032 418 aaPredicted RBP18.95■□□□□ 0.62
CLN3-252ENST00000636907 TKFCQ3LXA3 575 aa18.95■□□□□ 0.62
CLN3-252ENST00000636907 LBX2Q6XYB7 198 aa18.95■□□□□ 0.62
CLN3-252ENST00000636907 MLKLQ8NB16 471 aa18.95■□□□□ 0.62
CLN3-252ENST00000636907 STK17AQ9UEE5 414 aa18.95■□□□□ 0.62
CLN3-252ENST00000636907 VAV3Q9UKW4 847 aa18.95■□□□□ 0.62
CLN3-252ENST00000636907 MEIS1O00470 390 aa18.94■□□□□ 0.62
CLN3-252ENST00000636907 CCT6AP40227 531 aaKnown RBP18.94■□□□□ 0.62
CLN3-252ENST00000636907 SLC5A5Q92911 643 aa18.94■□□□□ 0.62
CLN3-252ENST00000636907 PURBQ96QR8 312 aaKnown RBP18.94■□□□□ 0.62
CLN3-252ENST00000636907 MXRA8Q9BRK3 442 aa18.94■□□□□ 0.62
CLN3-252ENST00000636907 AGTPBP1Q9UPW5 1226 aa18.94■□□□□ 0.62
CLN3-252ENST00000636907 SOCS7O14512 581 aa18.93■□□□□ 0.62
CLN3-252ENST00000636907 PEX10O60683 326 aa18.93■□□□□ 0.62
CLN3-252ENST00000636907 RPN1P04843 607 aaKnown RBP18.93■□□□□ 0.62
CLN3-252ENST00000636907 MYL1P05976 194 aa18.93■□□□□ 0.62
CLN3-252ENST00000636907 ARP10275 920 aa18.93■□□□□ 0.62
CLN3-252ENST00000636907 EIF2AK2P19525 551 aaKnown RBP18.93■□□□□ 0.62
CLN3-252ENST00000636907 IRX3P78415 501 aaPredicted RBP18.93■□□□□ 0.62
CLN3-252ENST00000636907 SETQ01105 290 aaPredicted RBP18.93■□□□□ 0.62
CLN3-252ENST00000636907 NCAPHQ15003 741 aa18.93■□□□□ 0.62
CLN3-252ENST00000636907 HYIQ5T013 277 aa18.93■□□□□ 0.62
CLN3-252ENST00000636907 PCNX4Q63HM2 1172 aa18.93■□□□□ 0.62
CLN3-252ENST00000636907 NCAPH2Q6IBW4 605 aa18.93■□□□□ 0.62
CLN3-252ENST00000636907 KCNK18Q7Z418 384 aa18.93■□□□□ 0.62
CLN3-252ENST00000636907 SLC10A4Q96EP9 437 aa18.93■□□□□ 0.62
CLN3-252ENST00000636907 RMDN3Q96TC7 470 aa18.93■□□□□ 0.62
CLN3-252ENST00000636907 ASCC2Q9H1I8 757 aaPredicted RBP18.93■□□□□ 0.62
CLN3-252ENST00000636907 ACAD9Q9H845 621 aa18.93■□□□□ 0.62
CLN3-252ENST00000636907 BTBD7Q9P203 1132 aa18.93■□□□□ 0.62
CLN3-252ENST00000636907 KDM3AQ9Y4C1 1321 aa18.93■□□□□ 0.62
CLN3-252ENST00000636907 SMTNL1A8MU46 457 aa18.92■□□□□ 0.62
CLN3-252ENST00000636907 IKBKBO14920 756 aa18.92■□□□□ 0.62
CLN3-252ENST00000636907 SLC26A4O43511 780 aa18.92■□□□□ 0.62
Retrieved 100 of 20,778 RNA–protein pairs in 25.4 ms