RNA–Protein interactions for RNA: ENST00000636355.1

CLN3-248, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 975 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-248ENST00000636355 TTC12Q9H892 705 aaPredicted RBP11.91□□□□□ -0.5
CLN3-248ENST00000636355 RAVER2Q9HCJ3 691 aaKnown RBP11.91□□□□□ -0.5
CLN3-248ENST00000636355 RNF146Q9NTX7 359 aa11.91□□□□□ -0.5
CLN3-248ENST00000636355 SERTAD1Q9UHV2 236 aa11.91□□□□□ -0.5
CLN3-248ENST00000636355 PCDHA12Q9UN75 941 aa11.91□□□□□ -0.5
CLN3-248ENST00000636355 CEP350Q5VT06 3117 aa11.91□□□□□ -0.5
CLN3-248ENST00000636355 ZNF236Q9UL36 1845 aa11.9□□□□□ -0.5
CLN3-248ENST00000636355 NFIBO00712 420 aa11.9□□□□□ -0.5
CLN3-248ENST00000636355 IKBKBO14920 756 aa11.9□□□□□ -0.5
CLN3-248ENST00000636355 MARCH6O60337 910 aa11.9□□□□□ -0.5
CLN3-248ENST00000636355 STAM2O75886 525 aa11.9□□□□□ -0.5
CLN3-248ENST00000636355 ALAS1P13196 640 aa11.9□□□□□ -0.5
CLN3-248ENST00000636355 TXKP42681 527 aa11.9□□□□□ -0.5
CLN3-248ENST00000636355 IRX3P78415 501 aaPredicted RBP11.9□□□□□ -0.5
CLN3-248ENST00000636355 AMPD3Q01432 767 aa11.9□□□□□ -0.5
CLN3-248ENST00000636355 DPYDQ12882 1025 aa11.9□□□□□ -0.5
CLN3-248ENST00000636355 PNOCQ13519 176 aa11.9□□□□□ -0.5
CLN3-248ENST00000636355 TMEM119Q4V9L6 283 aa11.9□□□□□ -0.5
CLN3-248ENST00000636355 CEP55Q53EZ4 464 aa11.9□□□□□ -0.5
CLN3-248ENST00000636355 SNRNP48Q6IEG0 339 aaKnown RBP11.9□□□□□ -0.5
CLN3-248ENST00000636355 DNAJC5GQ8N7S2 189 aa11.9□□□□□ -0.5
CLN3-248ENST00000636355 PAGE5Q96GU1 130 aa11.9□□□□□ -0.5
CLN3-248ENST00000636355 CDK5RAP3Q96JB5 506 aa11.9□□□□□ -0.5
CLN3-248ENST00000636355 PDLIM2Q96JY6 352 aa11.9□□□□□ -0.5
CLN3-248ENST00000636355 TRERF1Q96PN7 1200 aa11.9□□□□□ -0.5
CLN3-248ENST00000636355 WDR11Q9BZH6 1224 aa11.9□□□□□ -0.5
CLN3-248ENST00000636355 DNAJC25Q9H1X3 360 aa11.9□□□□□ -0.5
CLN3-248ENST00000636355 ELP3Q9H9T3 547 aa11.9□□□□□ -0.5
CLN3-248ENST00000636355 KBTBD4Q9NVX7 518 aa11.9□□□□□ -0.5
CLN3-248ENST00000636355 PNMA3Q9UL41 463 aa11.9□□□□□ -0.5
CLN3-248ENST00000636355 KIAA1217Q5T5P2 1943 aa11.9□□□□□ -0.51
CLN3-248ENST00000636355 FAM86B1E9PN63 330 aa11.89□□□□□ -0.51
CLN3-248ENST00000636355 FAM86B2P0C5J1 330 aa11.89□□□□□ -0.51
CLN3-248ENST00000636355 ZBTB48P10074 688 aaPredicted RBP11.89□□□□□ -0.51
CLN3-248ENST00000636355 PLCG1P19174 1290 aa11.89□□□□□ -0.51
CLN3-248ENST00000636355 ZNF76P36508 570 aa11.89□□□□□ -0.51
CLN3-248ENST00000636355 PPP1R2P41236 205 aa11.89□□□□□ -0.51
CLN3-248ENST00000636355 TECP42680 631 aa11.89□□□□□ -0.51
CLN3-248ENST00000636355 TPM4P67936 248 aa11.89□□□□□ -0.51
CLN3-248ENST00000636355 SPIRE1Q08AE8 756 aa11.89□□□□□ -0.51
CLN3-248ENST00000636355 PPP2R5CQ13362 524 aa11.89□□□□□ -0.51
CLN3-248ENST00000636355 DGKZQ13574 1117 aa11.89□□□□□ -0.51
CLN3-248ENST00000636355 PRKG1Q13976 671 aa11.89□□□□□ -0.51
CLN3-248ENST00000636355 MORC3Q14149 939 aa11.89□□□□□ -0.51
CLN3-248ENST00000636355 KCNB1Q14721 858 aa11.89□□□□□ -0.51
CLN3-248ENST00000636355 KARSQ15046 597 aaKnown RBP11.89□□□□□ -0.51
CLN3-248ENST00000636355 PRR16Q569H4 304 aa11.89□□□□□ -0.51
CLN3-248ENST00000636355 NAALADL2Q58DX5 795 aa11.89□□□□□ -0.51
CLN3-248ENST00000636355 RNF207Q6ZRF8 634 aa11.89□□□□□ -0.51
CLN3-248ENST00000636355 FCHSD1Q86WN1 690 aa11.89□□□□□ -0.51
CLN3-248ENST00000636355 RIOX2Q8IUF8 465 aa11.89□□□□□ -0.51
CLN3-248ENST00000636355 CPXCR1Q8N123 301 aa11.89□□□□□ -0.51
CLN3-248ENST00000636355 NEK9Q8TD19 979 aa11.89□□□□□ -0.51
CLN3-248ENST00000636355 SYTL5Q8TDW5 730 aaPredicted RBP11.89□□□□□ -0.51
CLN3-248ENST00000636355 SNX29Q8TEQ0 813 aa11.89□□□□□ -0.51
CLN3-248ENST00000636355 SLC5A5Q92911 643 aa11.89□□□□□ -0.51
CLN3-248ENST00000636355 OPTNQ96CV9 577 aa11.89□□□□□ -0.51
CLN3-248ENST00000636355 RIT2Q99578 217 aa11.89□□□□□ -0.51
CLN3-248ENST00000636355 MMTAG2Q9BU76 263 aaKnown RBP11.89□□□□□ -0.51
CLN3-248ENST00000636355 CBX8Q9HC52 389 aa11.89□□□□□ -0.51
CLN3-248ENST00000636355 FZD1Q9UP38 647 aa11.89□□□□□ -0.51
CLN3-248ENST00000636355 PCDHA5Q9Y5H7 936 aa11.89□□□□□ -0.51
CLN3-248ENST00000636355 LOC102724159A0A0B4J2E5 919 aa11.88□□□□□ -0.51
CLN3-248ENST00000636355 GOLGA6L19H0YKK7 550 aa11.88□□□□□ -0.51
CLN3-248ENST00000636355 MEIS1O00470 390 aa11.88□□□□□ -0.51
CLN3-248ENST00000636355 SLC34A2O95436 690 aa11.88□□□□□ -0.51
CLN3-248ENST00000636355 SLC25A27O95847 323 aa11.88□□□□□ -0.51
CLN3-248ENST00000636355 STAT3P40763 770 aa11.88□□□□□ -0.51
CLN3-248ENST00000636355 RPS6P62753 249 aaKnown RBP11.88□□□□□ -0.51
CLN3-248ENST00000636355 TMEM132BQ14DG7 1078 aa11.88□□□□□ -0.51
CLN3-248ENST00000636355 IQCB1Q15051 598 aa11.88□□□□□ -0.51
CLN3-248ENST00000636355 PWP2Q15269 919 aaKnown RBP11.88□□□□□ -0.51
CLN3-248ENST00000636355 DPCR1Q3MIW9 517 aa11.88□□□□□ -0.51
CLN3-248ENST00000636355 MUM1L1Q5H9M0 696 aa11.88□□□□□ -0.51
CLN3-248ENST00000636355 SARM1Q6SZW1 724 aa11.88□□□□□ -0.51
CLN3-248ENST00000636355 RNF214Q8ND24 703 aa11.88□□□□□ -0.51
CLN3-248ENST00000636355 DNERQ8NFT8 737 aa11.88□□□□□ -0.51
CLN3-248ENST00000636355 CCDC47Q96A33 483 aaKnown RBP11.88□□□□□ -0.51
CLN3-248ENST00000636355 CLMNQ96JQ2 1002 aa11.88□□□□□ -0.51
CLN3-248ENST00000636355 PPP1R9BQ96SB3 815 aa11.88□□□□□ -0.51
CLN3-248ENST00000636355 GBA2Q9HCG7 927 aaPredicted RBP11.88□□□□□ -0.51
CLN3-248ENST00000636355 CLEC11AQ9Y240 323 aa11.88□□□□□ -0.51
CLN3-248ENST00000636355 WDR81Q562E7 1941 aa11.88□□□□□ -0.51
CLN3-248ENST00000636355 POTEMA6NI47 508 aa11.87□□□□□ -0.51
CLN3-248ENST00000636355 SMTNL1A8MU46 457 aa11.87□□□□□ -0.51
CLN3-248ENST00000636355 BECN2A8MW95 431 aa11.87□□□□□ -0.51
CLN3-248ENST00000636355 KIF3CO14782 793 aa11.87□□□□□ -0.51
CLN3-248ENST00000636355 MSH4O15457 936 aa11.87□□□□□ -0.51
CLN3-248ENST00000636355 MAFGO15525 162 aa11.87□□□□□ -0.51
CLN3-248ENST00000636355 PSMD10O75832 226 aa11.87□□□□□ -0.51
CLN3-248ENST00000636355 CETPP11597 493 aa11.87□□□□□ -0.51
CLN3-248ENST00000636355 OSBPP22059 807 aa11.87□□□□□ -0.51
CLN3-248ENST00000636355 RPA1P27694 616 aa11.87□□□□□ -0.51
CLN3-248ENST00000636355 ERCC5P28715 1186 aaPredicted RBP11.87□□□□□ -0.51
CLN3-248ENST00000636355 GTF2A2P52657 109 aa11.87□□□□□ -0.51
CLN3-248ENST00000636355 HERVK_113P62684 666 aa11.87□□□□□ -0.51
CLN3-248ENST00000636355 MYL5Q02045 173 aa11.87□□□□□ -0.51
CLN3-248ENST00000636355 GRB10Q13322 594 aa11.87□□□□□ -0.51
CLN3-248ENST00000636355 MOGSQ13724 837 aa11.87□□□□□ -0.51
CLN3-248ENST00000636355 TREML2Q5T2D2 321 aa11.87□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 17.4 ms