RNA–Protein interactions for RNA: ENST00000636147.1

CLN3-244, Transcript of CLN3, battenin, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLN3, Length 3,832 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-244ENST00000636147 TMEM131LA2VDJ0 1609 aa12.11□□□□□ -0.47
CLN3-244ENST00000636147 ABCC12Q96J65 1359 aa12.11□□□□□ -0.47
CLN3-244ENST00000636147 FLOT1O75955 427 aa12.11□□□□□ -0.47
CLN3-244ENST00000636147 NT5DC1Q5TFE4 455 aa12.11□□□□□ -0.47
CLN3-244ENST00000636147 TBCAO75347 108 aaKnown RBP12.11□□□□□ -0.47
CLN3-244ENST00000636147 BAG3O95817 575 aa12.11□□□□□ -0.47
CLN3-244ENST00000636147 CHRNDQ07001 517 aa12.11□□□□□ -0.47
CLN3-244ENST00000636147 KRT25Q7Z3Z0 450 aa12.11□□□□□ -0.47
CLN3-244ENST00000636147 VSIG1Q86XK7 387 aa12.11□□□□□ -0.47
CLN3-244ENST00000636147 HVCN1Q96D96 273 aa12.11□□□□□ -0.47
CLN3-244ENST00000636147 PHF20Q9BVI0 1012 aa12.11□□□□□ -0.47
CLN3-244ENST00000636147 SH2D4AQ9H788 454 aa12.11□□□□□ -0.47
CLN3-244ENST00000636147 SLC40A1Q9NP59 571 aa12.11□□□□□ -0.47
CLN3-244ENST00000636147 DIP2CQ9Y2E4 1556 aa12.11□□□□□ -0.47
CLN3-244ENST00000636147 DDAH1O94760 285 aa12.1□□□□□ -0.47
CLN3-244ENST00000636147 GJC1P36383 396 aa12.1□□□□□ -0.47
CLN3-244ENST00000636147 AARSP49588 968 aaKnown RBP eCLIP12.1□□□□□ -0.47
CLN3-244ENST00000636147 CALCOCO2Q13137 446 aa12.1□□□□□ -0.47
CLN3-244ENST00000636147 FAM26FQ5R3K3 315 aa12.1□□□□□ -0.47
CLN3-244ENST00000636147 NEK8Q86SG6 692 aa12.1□□□□□ -0.47
CLN3-244ENST00000636147 CCDC13Q8IYE1 715 aa12.1□□□□□ -0.47
CLN3-244ENST00000636147 FBF1Q8TES7 1133 aa12.1□□□□□ -0.47
CLN3-244ENST00000636147 UBXN6Q9BZV1 441 aa12.1□□□□□ -0.47
CLN3-244ENST00000636147 ACTR5Q9H9F9 607 aaPredicted RBP12.1□□□□□ -0.47
CLN3-244ENST00000636147 MLXIPLQ9NP71 852 aa12.1□□□□□ -0.47
CLN3-244ENST00000636147 MAP3K15Q6ZN16 1313 aa12.1□□□□□ -0.47
CLN3-244ENST00000636147 SMIM22K7EJ46 135 aa12.1□□□□□ -0.47
CLN3-244ENST00000636147 RPS6KA5O75582 802 aa12.1□□□□□ -0.47
CLN3-244ENST00000636147 GLI1P08151 1106 aa12.1□□□□□ -0.47
CLN3-244ENST00000636147 H2AFZP0C0S5 128 aa12.1□□□□□ -0.47
CLN3-244ENST00000636147 FAM153BP0C7A2 387 aa12.1□□□□□ -0.47
CLN3-244ENST00000636147 SCP2P22307 547 aa12.1□□□□□ -0.47
CLN3-244ENST00000636147 VPS41P49754 854 aa12.1□□□□□ -0.47
CLN3-244ENST00000636147 ATP11AP98196 1134 aa12.1□□□□□ -0.47
CLN3-244ENST00000636147 ARHGAP44Q17R89 818 aa12.1□□□□□ -0.47
CLN3-244ENST00000636147 FAM153CQ494X1 144 aa12.1□□□□□ -0.47
CLN3-244ENST00000636147 H2AFVQ71UI9 128 aa12.1□□□□□ -0.47
CLN3-244ENST00000636147 MAPKAPK5Q8IW41 473 aa12.1□□□□□ -0.47
CLN3-244ENST00000636147 SYCP3Q8IZU3 236 aa12.1□□□□□ -0.47
CLN3-244ENST00000636147 NKX2-3Q8TAU0 364 aa12.1□□□□□ -0.47
CLN3-244ENST00000636147 MYCBPAPQ8TBZ2 947 aa12.1□□□□□ -0.47
CLN3-244ENST00000636147 DYNLL2Q96FJ2 89 aa12.1□□□□□ -0.47
CLN3-244ENST00000636147 TRIM6Q9C030 488 aaPredicted RBP12.1□□□□□ -0.47
CLN3-244ENST00000636147 FAM153AQ9UHL3 310 aa12.1□□□□□ -0.47
CLN3-244ENST00000636147 FBXL5Q9UKA1 691 aa12.1□□□□□ -0.47
CLN3-244ENST00000636147 REXO2Q9Y3B8 237 aaKnown RBP12.1□□□□□ -0.47
CLN3-244ENST00000636147 PGRMC1O00264 195 aaKnown RBP12.1□□□□□ -0.47
CLN3-244ENST00000636147 DAPK3O43293 454 aa12.1□□□□□ -0.47
CLN3-244ENST00000636147 AMPD2Q01433 879 aa12.1□□□□□ -0.47
CLN3-244ENST00000636147 ADAM9Q13443 819 aa12.1□□□□□ -0.47
CLN3-244ENST00000636147 PICALMQ13492 652 aa12.1□□□□□ -0.47
CLN3-244ENST00000636147 ALX1Q15699 326 aa12.1□□□□□ -0.47
CLN3-244ENST00000636147 PTGISQ16647 500 aa12.1□□□□□ -0.47
CLN3-244ENST00000636147 ARL6IP4Q66PJ3 421 aaKnown RBP12.1□□□□□ -0.47
CLN3-244ENST00000636147 ZSCAN29Q8IWY8 852 aaPredicted RBP12.1□□□□□ -0.47
CLN3-244ENST00000636147 MARCH10Q8NA82 808 aaPredicted RBP12.1□□□□□ -0.47
CLN3-244ENST00000636147 LARP4BQ92615 738 aaKnown RBP12.1□□□□□ -0.47
CLN3-244ENST00000636147 KAT2BQ92831 832 aa12.1□□□□□ -0.47
CLN3-244ENST00000636147 TMEM60Q9H2L4 133 aa12.1□□□□□ -0.47
CLN3-244ENST00000636147 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP12.1□□□□□ -0.47
CLN3-244ENST00000636147 AMACRQ9UHK6 382 aa12.1□□□□□ -0.47
CLN3-244ENST00000636147 AMFRQ9UKV5 643 aa12.1□□□□□ -0.47
CLN3-244ENST00000636147 OTUD6AQ7L8S5 288 aa12.09□□□□□ -0.47
CLN3-244ENST00000636147 CCDC105Q8IYK2 499 aa12.09□□□□□ -0.47
CLN3-244ENST00000636147 MMGT1Q8N4V1 131 aa12.09□□□□□ -0.47
CLN3-244ENST00000636147 RDH13Q8NBN7 331 aa12.09□□□□□ -0.47
CLN3-244ENST00000636147 CYFIP2Q96F07 1278 aa12.09□□□□□ -0.47
CLN3-244ENST00000636147 USP17L3A6NCW0 530 aa12.09□□□□□ -0.47
CLN3-244ENST00000636147 USP17L4A6NCW7 530 aa12.09□□□□□ -0.47
CLN3-244ENST00000636147 SPDYE3A6NKU9 549 aa12.09□□□□□ -0.47
CLN3-244ENST00000636147 CASP7P55210 303 aa12.09□□□□□ -0.47
CLN3-244ENST00000636147 USP17L1Q7RTZ2 530 aa12.09□□□□□ -0.47
CLN3-244ENST00000636147 TBCKQ8TEA7 893 aa12.09□□□□□ -0.47
CLN3-244ENST00000636147 KLHL29Q96CT2 875 aa12.09□□□□□ -0.47
CLN3-244ENST00000636147 ANKRD26Q9UPS8 1709 aa12.09□□□□□ -0.47
CLN3-244ENST00000636147 FAM237AA0A1B0GTK4 181 aa12.09□□□□□ -0.47
CLN3-244ENST00000636147 ERVV-2B6SEH9 535 aa12.09□□□□□ -0.47
CLN3-244ENST00000636147 WNT7AO00755 349 aa12.09□□□□□ -0.47
CLN3-244ENST00000636147 USP17L8P0C7I0 530 aa12.09□□□□□ -0.47
CLN3-244ENST00000636147 PDHBP11177 359 aa12.09□□□□□ -0.47
CLN3-244ENST00000636147 FKBP3Q00688 224 aaKnown RBP12.09□□□□□ -0.47
CLN3-244ENST00000636147 PPP1R3FQ6ZSY5 799 aaPredicted RBP12.09□□□□□ -0.47
CLN3-244ENST00000636147 INTS8Q75QN2 995 aaKnown RBP12.09□□□□□ -0.47
CLN3-244ENST00000636147 SUGP1Q8IWZ8 645 aaKnown RBP12.09□□□□□ -0.47
CLN3-244ENST00000636147 ELOA2Q8IYF1 753 aaPredicted RBP12.09□□□□□ -0.47
CLN3-244ENST00000636147 FBXL16Q8N461 479 aa12.09□□□□□ -0.47
CLN3-244ENST00000636147 MDM1Q8TC05 714 aa12.09□□□□□ -0.47
CLN3-244ENST00000636147 TGFBRAP1Q8WUH2 860 aa12.09□□□□□ -0.47
CLN3-244ENST00000636147 IFT74Q96LB3 600 aa12.09□□□□□ -0.47
CLN3-244ENST00000636147 DNAJC7Q99615 494 aa12.09□□□□□ -0.47
CLN3-244ENST00000636147 NUCKS1Q9H1E3 243 aaKnown RBP12.09□□□□□ -0.47
CLN3-244ENST00000636147 CTTNBP2NLQ9P2B4 639 aa12.09□□□□□ -0.47
CLN3-244ENST00000636147 RNF14Q9UBS8 474 aa12.09□□□□□ -0.47
CLN3-244ENST00000636147 ZNF652Q9Y2D9 606 aa12.09□□□□□ -0.47
CLN3-244ENST00000636147 PXDNQ92626 1479 aa12.08□□□□□ -0.47
CLN3-244ENST00000636147 F8W031 263 aaPredicted RBP12.08□□□□□ -0.48
CLN3-244ENST00000636147 RAD51CO43502 376 aa12.08□□□□□ -0.48
CLN3-244ENST00000636147 TNFAIP3P21580 790 aa12.08□□□□□ -0.48
CLN3-244ENST00000636147 GLE1Q53GS7 698 aaKnown RBP12.08□□□□□ -0.48
CLN3-244ENST00000636147 FAM83BQ5T0W9 1011 aa12.08□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 126.9 ms