RNA–Protein interactions for RNA: ENST00000621245.4

CPNE3-210, Transcript of copine 3, humanhuman

TSL 5

Gene CPNE3, Length 581 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE3-210ENST00000621245 HSFX3A0A1B0GWH4 333 aaPredicted RBP13.37□□□□□ -0.27
CPNE3-210ENST00000621245 CABYRO75952 493 aa13.37□□□□□ -0.27
CPNE3-210ENST00000621245 PPP2R5BQ15173 497 aa13.37□□□□□ -0.27
CPNE3-210ENST00000621245 NBPF20Q3BBV1 942 aa13.37□□□□□ -0.27
CPNE3-210ENST00000621245 ASPRV1Q53RT3 343 aa13.37□□□□□ -0.27
CPNE3-210ENST00000621245 CCDC62Q6P9F0 684 aa13.37□□□□□ -0.27
CPNE3-210ENST00000621245 OTOP2Q7RTS6 562 aa13.37□□□□□ -0.27
CPNE3-210ENST00000621245 TIFAQ96CG3 184 aa13.37□□□□□ -0.27
CPNE3-210ENST00000621245 PRDM6Q9NQX0 595 aa13.37□□□□□ -0.27
CPNE3-210ENST00000621245 MAD2L2Q9UI95 211 aa13.37□□□□□ -0.27
CPNE3-210ENST00000621245 ABCB11O95342 1321 aa13.37□□□□□ -0.27
CPNE3-210ENST00000621245 HIP1O00291 1037 aa13.36□□□□□ -0.27
CPNE3-210ENST00000621245 ZEB2O60315 1214 aa13.36□□□□□ -0.27
CPNE3-210ENST00000621245 CYP21A2P08686 494 aa13.36□□□□□ -0.27
CPNE3-210ENST00000621245 PARP1P09874 1014 aaKnown RBP13.36□□□□□ -0.27
CPNE3-210ENST00000621245 TXNP10599 105 aaKnown RBP13.36□□□□□ -0.27
CPNE3-210ENST00000621245 MYOGP15173 224 aa13.36□□□□□ -0.27
CPNE3-210ENST00000621245 RABGGTBP53611 331 aa13.36□□□□□ -0.27
CPNE3-210ENST00000621245 ARHGAP1Q07960 439 aa13.36□□□□□ -0.27
CPNE3-210ENST00000621245 LY6KQ17RY6 165 aa13.36□□□□□ -0.27
CPNE3-210ENST00000621245 PSRC1Q6PGN9 363 aaPredicted RBP13.36□□□□□ -0.27
CPNE3-210ENST00000621245 CHST3Q7LGC8 479 aa13.36□□□□□ -0.27
CPNE3-210ENST00000621245 SKAP1Q86WV1 359 aa13.36□□□□□ -0.27
CPNE3-210ENST00000621245 DNERQ8NFT8 737 aa13.36□□□□□ -0.27
CPNE3-210ENST00000621245 HERVK_113Q902F9 699 aa13.36□□□□□ -0.27
CPNE3-210ENST00000621245 CTAGE1Q96RT6 745 aa13.36□□□□□ -0.27
CPNE3-210ENST00000621245 MTG1Q9BT17 334 aaPredicted RBP13.36□□□□□ -0.27
CPNE3-210ENST00000621245 ZNF576Q9H609 170 aa13.36□□□□□ -0.27
CPNE3-210ENST00000621245 TMEM265A0A087WTH1 108 aa13.35□□□□□ -0.27
CPNE3-210ENST00000621245 LOC102724159A0A0B4J2E5 919 aa13.35□□□□□ -0.27
CPNE3-210ENST00000621245 A6NJR5 290 aa13.35□□□□□ -0.27
CPNE3-210ENST00000621245 DHX16O60231 1041 aaKnown RBP13.35□□□□□ -0.27
CPNE3-210ENST00000621245 EIF2AK2P19525 551 aaKnown RBP13.35□□□□□ -0.27
CPNE3-210ENST00000621245 CHMLP26374 656 aa13.35□□□□□ -0.27
CPNE3-210ENST00000621245 CPT1AP50416 773 aa13.35□□□□□ -0.27
CPNE3-210ENST00000621245 ADGRE1Q14246 886 aa13.35□□□□□ -0.27
CPNE3-210ENST00000621245 TTLL4Q14679 1199 aa13.35□□□□□ -0.27
CPNE3-210ENST00000621245 PWP2Q15269 919 aaKnown RBP13.35□□□□□ -0.27
CPNE3-210ENST00000621245 FAM47CQ5HY64 1035 aa13.35□□□□□ -0.27
CPNE3-210ENST00000621245 IFIT1BQ5T764 474 aaKnown RBP13.35□□□□□ -0.27
CPNE3-210ENST00000621245 SEPT14Q6ZU15 432 aa13.35□□□□□ -0.27
CPNE3-210ENST00000621245 FBXO11Q86XK2 927 aa13.35□□□□□ -0.27
CPNE3-210ENST00000621245 RGS22Q8NE09 1264 aa13.35□□□□□ -0.27
CPNE3-210ENST00000621245 IL31RAQ8NI17 732 aa13.35□□□□□ -0.27
CPNE3-210ENST00000621245 SCFD2Q8WU76 684 aa13.35□□□□□ -0.27
CPNE3-210ENST00000621245 AFG1LQ8WV93 481 aa13.35□□□□□ -0.27
CPNE3-210ENST00000621245 KRT23Q9C075 422 aa13.35□□□□□ -0.27
CPNE3-210ENST00000621245 NKX2-4Q9H2Z4 354 aa13.35□□□□□ -0.27
CPNE3-210ENST00000621245 PRDM12Q9H4Q4 367 aa13.35□□□□□ -0.27
CPNE3-210ENST00000621245 POLR3EQ9NVU0 708 aa13.35□□□□□ -0.27
CPNE3-210ENST00000621245 BDP1A6H8Y1 2624 aa13.34□□□□□ -0.27
CPNE3-210ENST00000621245 SORBS3O60504 671 aa13.34□□□□□ -0.27
CPNE3-210ENST00000621245 MMP3P08254 477 aa13.34□□□□□ -0.27
CPNE3-210ENST00000621245 ANTXR2P58335 489 aa13.34□□□□□ -0.27
CPNE3-210ENST00000621245 CHMP4BP1P59074 171 aa13.34□□□□□ -0.27
CPNE3-210ENST00000621245 SMYD5Q6GMV2 418 aa13.34□□□□□ -0.27
CPNE3-210ENST00000621245 DEFB128Q7Z7B8 93 aa13.34□□□□□ -0.27
CPNE3-210ENST00000621245 KAT2BQ92831 832 aa13.34□□□□□ -0.27
CPNE3-210ENST00000621245 MTMR8Q96EF0 704 aa13.34□□□□□ -0.27
CPNE3-210ENST00000621245 RMDN3Q96TC7 470 aa13.34□□□□□ -0.27
CPNE3-210ENST00000621245 UBAC1Q9BSL1 405 aa13.34□□□□□ -0.27
CPNE3-210ENST00000621245 GPHNQ9NQX3 736 aaPredicted RBP13.34□□□□□ -0.27
CPNE3-210ENST00000621245 PXMP2Q9NR77 195 aa13.34□□□□□ -0.27
CPNE3-210ENST00000621245 CTNNA3Q9UI47 895 aa13.34□□□□□ -0.27
CPNE3-210ENST00000621245 SIP14410 1827 aa13.34□□□□□ -0.27
CPNE3-210ENST00000621245 PALM3A6NDB9 673 aaPredicted RBP13.33□□□□□ -0.28
CPNE3-210ENST00000621245 KLRF2D3W0D1 207 aa13.33□□□□□ -0.28
CPNE3-210ENST00000621245 CYTH3O43739 400 aa13.33□□□□□ -0.28
CPNE3-210ENST00000621245 ZMYND10O75800 440 aa13.33□□□□□ -0.28
CPNE3-210ENST00000621245 RGS20O76081 388 aa13.33□□□□□ -0.28
CPNE3-210ENST00000621245 ARHGEF15O94989 841 aa13.33□□□□□ -0.28
CPNE3-210ENST00000621245 CFBP00751 764 aa13.33□□□□□ -0.28
CPNE3-210ENST00000621245 FGBP02675 491 aa13.33□□□□□ -0.28
CPNE3-210ENST00000621245 HOXA13P31271 388 aaPredicted RBP13.33□□□□□ -0.28
CPNE3-210ENST00000621245 HSD17B4P51659 736 aa13.33□□□□□ -0.28
CPNE3-210ENST00000621245 TCTN1Q2MV58 587 aa13.33□□□□□ -0.28
CPNE3-210ENST00000621245 CCDC178Q5BJE1 867 aa13.33□□□□□ -0.28
CPNE3-210ENST00000621245 GDF6Q6KF10 455 aaPredicted RBP13.33□□□□□ -0.28
CPNE3-210ENST00000621245 HOMER1Q86YM7 354 aa13.33□□□□□ -0.28
CPNE3-210ENST00000621245 GPKOWQ92917 476 aaPredicted RBP eCLIP13.33□□□□□ -0.28
CPNE3-210ENST00000621245 CNNM2Q9H8M5 875 aa13.33□□□□□ -0.28
CPNE3-210ENST00000621245 MICAL3Q7RTP6 2002 aa13.33□□□□□ -0.28
CPNE3-210ENST00000621245 RAD50Q92878 1312 aa13.33□□□□□ -0.28
CPNE3-210ENST00000621245 TCF20Q9UGU0 1960 aaKnown RBP13.32□□□□□ -0.28
CPNE3-210ENST00000621245 PRRC2BQ5JSZ5 2229 aaKnown RBP13.32□□□□□ -0.28
CPNE3-210ENST00000621245 E7EWF7 191 aa13.32□□□□□ -0.28
CPNE3-210ENST00000621245 NKRFO15226 690 aaKnown RBP eCLIP13.32□□□□□ -0.28
CPNE3-210ENST00000621245 SGSM2O43147 1006 aa13.32□□□□□ -0.28
CPNE3-210ENST00000621245 ZNF286BP0CG31 522 aa13.32□□□□□ -0.28
CPNE3-210ENST00000621245 HIC1Q14526 733 aa13.32□□□□□ -0.28
CPNE3-210ENST00000621245 GRM4Q14833 912 aa13.32□□□□□ -0.28
CPNE3-210ENST00000621245 SPRED2Q7Z698 418 aa13.32□□□□□ -0.28
CPNE3-210ENST00000621245 DHX38Q92620 1227 aaKnown RBP13.32□□□□□ -0.28
CPNE3-210ENST00000621245 WNT8BQ93098 351 aa13.32□□□□□ -0.28
CPNE3-210ENST00000621245 PIGSQ96S52 555 aa13.32□□□□□ -0.28
CPNE3-210ENST00000621245 BCAS3Q9H6U6 928 aa13.32□□□□□ -0.28
CPNE3-210ENST00000621245 DDX41Q9UJV9 622 aaKnown RBP13.32□□□□□ -0.28
CPNE3-210ENST00000621245 PNMA2Q9UL42 364 aa13.32□□□□□ -0.28
CPNE3-210ENST00000621245 MRPL11Q9Y3B7 192 aaKnown RBP13.32□□□□□ -0.28
CPNE3-210ENST00000621245 ZBBXA8MT70 800 aa13.31□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 30.2 ms