RNA–Protein interactions for RNA: ENST00000598553.1

VRK3-214, Transcript of vaccinia related kinase 3, humanhuman

TSL 2

Gene VRK3, Length 595 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-214ENST00000598553 TTLL4Q14679 1199 aa12.37□□□□□ -0.43
VRK3-214ENST00000598553 MCF2L2Q86YR7 1114 aa12.37□□□□□ -0.43
VRK3-214ENST00000598553 NSUN6Q8TEA1 469 aaKnown RBP12.37□□□□□ -0.43
VRK3-214ENST00000598553 WNT8BQ93098 351 aa12.37□□□□□ -0.43
VRK3-214ENST00000598553 MTG1Q9BT17 334 aaPredicted RBP12.37□□□□□ -0.43
VRK3-214ENST00000598553 BRPF3Q9ULD4 1205 aa12.37□□□□□ -0.43
VRK3-214ENST00000598553 MYO9BQ13459 2157 aa12.37□□□□□ -0.43
VRK3-214ENST00000598553 COL6A3P12111 3177 aa12.36□□□□□ -0.43
VRK3-214ENST00000598553 PNMA6FA0A0J9YX94 578 aa12.36□□□□□ -0.43
VRK3-214ENST00000598553 ERICH2A1L162 156 aa12.36□□□□□ -0.43
VRK3-214ENST00000598553 TLR3O15455 904 aaKnown RBP12.36□□□□□ -0.43
VRK3-214ENST00000598553 CABYRO75952 493 aa12.36□□□□□ -0.43
VRK3-214ENST00000598553 DDAH1O94760 285 aa12.36□□□□□ -0.43
VRK3-214ENST00000598553 CPT1AP50416 773 aa12.36□□□□□ -0.43
VRK3-214ENST00000598553 CHMP4BP1P59074 171 aa12.36□□□□□ -0.43
VRK3-214ENST00000598553 MRPS9P82933 396 aaKnown RBP12.36□□□□□ -0.43
VRK3-214ENST00000598553 STXBP2Q15833 593 aa12.36□□□□□ -0.43
VRK3-214ENST00000598553 TCTN1Q2MV58 587 aa12.36□□□□□ -0.43
VRK3-214ENST00000598553 FAM47CQ5HY64 1035 aa12.36□□□□□ -0.43
VRK3-214ENST00000598553 USP17L6PQ6QN14 398 aa12.36□□□□□ -0.43
VRK3-214ENST00000598553 CATIPQ7Z7H3 387 aa12.36□□□□□ -0.43
VRK3-214ENST00000598553 MYLIPQ8WY64 445 aa12.36□□□□□ -0.43
VRK3-214ENST00000598553 DHX38Q92620 1227 aaKnown RBP12.36□□□□□ -0.43
VRK3-214ENST00000598553 SEMA6BQ9H3T3 888 aa12.36□□□□□ -0.43
VRK3-214ENST00000598553 POLR3EQ9NVU0 708 aa12.36□□□□□ -0.43
VRK3-214ENST00000598553 FRMPD4Q14CM0 1322 aa12.36□□□□□ -0.43
VRK3-214ENST00000598553 MEIS2O14770 477 aa12.35□□□□□ -0.43
VRK3-214ENST00000598553 ADAMTS3O15072 1205 aa12.35□□□□□ -0.43
VRK3-214ENST00000598553 NKRFO15226 690 aaKnown RBP eCLIP12.35□□□□□ -0.43
VRK3-214ENST00000598553 ZEB2O60315 1214 aa12.35□□□□□ -0.43
VRK3-214ENST00000598553 GH1P01241 217 aa12.35□□□□□ -0.43
VRK3-214ENST00000598553 UBA1P22314 1058 aaKnown RBP12.35□□□□□ -0.43
VRK3-214ENST00000598553 SMAD3P84022 425 aaKnown RBP12.35□□□□□ -0.43
VRK3-214ENST00000598553 ZNF200P98182 395 aaPredicted RBP12.35□□□□□ -0.43
VRK3-214ENST00000598553 GPNMBQ14956 572 aa12.35□□□□□ -0.43
VRK3-214ENST00000598553 ZNF697Q5TEC3 545 aa12.35□□□□□ -0.43
VRK3-214ENST00000598553 GDF6Q6KF10 455 aaPredicted RBP12.35□□□□□ -0.43
VRK3-214ENST00000598553 TYW1BQ6NUM6 668 aa12.35□□□□□ -0.43
VRK3-214ENST00000598553 MICU3Q86XE3 530 aa12.35□□□□□ -0.43
VRK3-214ENST00000598553 CCDC82Q8N4S0 544 aa12.35□□□□□ -0.43
VRK3-214ENST00000598553 IWS1Q96ST2 819 aa12.35□□□□□ -0.43
VRK3-214ENST00000598553 CDX2Q99626 313 aaPredicted RBP12.35□□□□□ -0.43
VRK3-214ENST00000598553 SPZ1Q9BXG8 430 aa12.35□□□□□ -0.43
VRK3-214ENST00000598553 IL23AQ9NPF7 189 aa12.35□□□□□ -0.43
VRK3-214ENST00000598553 STXBP5LQ9Y2K9 1186 aa12.35□□□□□ -0.43
VRK3-214ENST00000598553 MRVI1Q9Y6F6 885 aa12.35□□□□□ -0.43
VRK3-214ENST00000598553 COL4A4P53420 1690 aaPredicted RBP12.35□□□□□ -0.43
VRK3-214ENST00000598553 WDR81Q562E7 1941 aa12.35□□□□□ -0.43
VRK3-214ENST00000598553 LOXHD1Q8IVV2 1947 aa12.35□□□□□ -0.43
VRK3-214ENST00000598553 CNTNAP5Q8WYK1 1306 aa12.35□□□□□ -0.43
VRK3-214ENST00000598553 MICAL3Q7RTP6 2002 aa12.34□□□□□ -0.43
VRK3-214ENST00000598553 GCOM1H8Y6P7 765 aaPredicted RBP12.34□□□□□ -0.43
VRK3-214ENST00000598553 CDC45O75419 566 aa12.34□□□□□ -0.43
VRK3-214ENST00000598553 POLR2MP0CAP2 368 aa12.34□□□□□ -0.43
VRK3-214ENST00000598553 MYOGP15173 224 aa12.34□□□□□ -0.43
VRK3-214ENST00000598553 DNAJB2P25686 324 aa12.34□□□□□ -0.43
VRK3-214ENST00000598553 MCM5P33992 734 aa12.34□□□□□ -0.43
VRK3-214ENST00000598553 EXOSC10Q01780 885 aaKnown RBP12.34□□□□□ -0.43
VRK3-214ENST00000598553 PPIGQ13427 754 aaKnown RBP eCLIP12.34□□□□□ -0.439e-7■□□□□ 10.9
VRK3-214ENST00000598553 SART3Q15020 963 aaKnown RBP12.34□□□□□ -0.43
VRK3-214ENST00000598553 UBE2SQ16763 222 aa12.34□□□□□ -0.43
VRK3-214ENST00000598553 HSDL1Q3SXM5 330 aa12.34□□□□□ -0.43
VRK3-214ENST00000598553 CASC1Q6TDU7 716 aa12.34□□□□□ -0.43
VRK3-214ENST00000598553 NFXL1Q6ZNB6 911 aa12.34□□□□□ -0.43
VRK3-214ENST00000598553 OTOP2Q7RTS6 562 aa12.34□□□□□ -0.43
VRK3-214ENST00000598553 VSIG10LQ86VR7 867 aa12.34□□□□□ -0.43
VRK3-214ENST00000598553 TMEM87BQ96K49 555 aa12.34□□□□□ -0.43
VRK3-214ENST00000598553 PBX4Q9BYU1 374 aa12.34□□□□□ -0.43
VRK3-214ENST00000598553 RTEL1Q9NZ71 1219 aa12.34□□□□□ -0.43
VRK3-214ENST00000598553 YBX2Q9Y2T7 364 aaKnown RBP12.34□□□□□ -0.43
VRK3-214ENST00000598553 CCDC69A6NI79 296 aa12.33□□□□□ -0.44
VRK3-214ENST00000598553 EIF3JO75822 258 aaKnown RBP12.33□□□□□ -0.44
VRK3-214ENST00000598553 ARHGEF15O94989 841 aa12.33□□□□□ -0.44
VRK3-214ENST00000598553 GGPS1O95749 300 aa12.33□□□□□ -0.44
VRK3-214ENST00000598553 RABGGTBP53611 331 aa12.33□□□□□ -0.44
VRK3-214ENST00000598553 FUT2Q10981 343 aa12.33□□□□□ -0.44
VRK3-214ENST00000598553 GRIN2CQ14957 1233 aa12.33□□□□□ -0.44
VRK3-214ENST00000598553 MYSM1Q5VVJ2 828 aa12.33□□□□□ -0.44
VRK3-214ENST00000598553 TMTC3Q6ZXV5 915 aa12.33□□□□□ -0.44
VRK3-214ENST00000598553 DEFB128Q7Z7B8 93 aa12.33□□□□□ -0.44
VRK3-214ENST00000598553 TMEM199Q8N511 208 aa12.33□□□□□ -0.44
VRK3-214ENST00000598553 CTCFLQ8NI51 663 aaPredicted RBP12.33□□□□□ -0.44
VRK3-214ENST00000598553 HERVK_113Q902F9 699 aa12.33□□□□□ -0.44
VRK3-214ENST00000598553 MPHOSPH6Q99547 160 aaKnown RBP12.33□□□□□ -0.44
VRK3-214ENST00000598553 ALG1Q9BT22 464 aa12.33□□□□□ -0.44
VRK3-214ENST00000598553 OSBPL7Q9BZF2 842 aa12.33□□□□□ -0.44
VRK3-214ENST00000598553 MAF1Q9H063 256 aa12.33□□□□□ -0.44
VRK3-214ENST00000598553 FAM217BQ9NTX9 383 aaPredicted RBP12.33□□□□□ -0.44
VRK3-214ENST00000598553 HDAC6Q9UBN7 1215 aa12.33□□□□□ -0.44
VRK3-214ENST00000598553 KAT6AQ92794 2004 aa12.33□□□□□ -0.44
VRK3-214ENST00000598553 HAS3O00219 553 aa12.32□□□□□ -0.44
VRK3-214ENST00000598553 HOXD8P13378 290 aaPredicted RBP12.32□□□□□ -0.44
VRK3-214ENST00000598553 CDC27P30260 824 aa12.32□□□□□ -0.44
VRK3-214ENST00000598553 LIFRP42702 1097 aa12.32□□□□□ -0.44
VRK3-214ENST00000598553 PSEN2P49810 448 aa12.32□□□□□ -0.44
VRK3-214ENST00000598553 CELF3Q5SZQ8 465 aaKnown RBP12.32□□□□□ -0.44
VRK3-214ENST00000598553 NFRKBQ6P4R8 1299 aa12.32□□□□□ -0.44
VRK3-214ENST00000598553 TRAF7Q6Q0C0 670 aa12.32□□□□□ -0.44
VRK3-214ENST00000598553 APOA5Q6Q788 366 aa12.32□□□□□ -0.44
VRK3-214ENST00000598553 SPRED2Q7Z698 418 aa12.32□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 28.3 ms