RNA–Protein interactions for RNA: ENST00000596104.5

LIG1-209, Transcript of DNA ligase 1, humanhuman

TSL 3

Gene LIG1, Length 531 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-209ENST00000596104 GTF2IRD1Q9UHL9 959 aa11.68□□□□□ -0.54
LIG1-209ENST00000596104 SCN5AQ14524 2016 aa11.67□□□□□ -0.54
LIG1-209ENST00000596104 ABCB11O95342 1321 aa11.67□□□□□ -0.54
LIG1-209ENST00000596104 RBAK-RBAKDNI3L0D1 243 aa11.67□□□□□ -0.54
LIG1-209ENST00000596104 HAS3O00219 553 aa11.67□□□□□ -0.54
LIG1-209ENST00000596104 PARNO95453 639 aaKnown RBP11.67□□□□□ -0.54
LIG1-209ENST00000596104 CKBP12277 381 aa11.67□□□□□ -0.54
LIG1-209ENST00000596104 CASTP20810 708 aaKnown RBP11.67□□□□□ -0.54
LIG1-209ENST00000596104 STXBP2Q15833 593 aa11.67□□□□□ -0.54
LIG1-209ENST00000596104 TRIM71Q2Q1W2 868 aaKnown RBP11.67□□□□□ -0.54
LIG1-209ENST00000596104 CNKSR3Q6P9H4 555 aa11.67□□□□□ -0.54
LIG1-209ENST00000596104 ADGRF4Q8IZF3 695 aa11.67□□□□□ -0.54
LIG1-209ENST00000596104 PNMA1Q8ND90 353 aa11.67□□□□□ -0.54
LIG1-209ENST00000596104 ANKS1AQ92625 1134 aa11.67□□□□□ -0.54
LIG1-209ENST00000596104 EMID1Q96A84 441 aaPredicted RBP11.67□□□□□ -0.54
LIG1-209ENST00000596104 IWS1Q96ST2 819 aa11.67□□□□□ -0.54
LIG1-209ENST00000596104 RNF41Q9H4P4 317 aaPredicted RBP11.67□□□□□ -0.54
LIG1-209ENST00000596104 LMCD1Q9NZU5 365 aa11.67□□□□□ -0.54
LIG1-209ENST00000596104 HDAC6Q9UBN7 1215 aa11.67□□□□□ -0.54
LIG1-209ENST00000596104 ZBTB47Q9UFB7 747 aaPredicted RBP11.67□□□□□ -0.54
LIG1-209ENST00000596104 DDX41Q9UJV9 622 aaKnown RBP11.67□□□□□ -0.54
LIG1-209ENST00000596104 TANC1Q9C0D5 1861 aa11.66□□□□□ -0.54
LIG1-209ENST00000596104 ABHD14A-ACY1A0A1B0GW23 586 aa11.66□□□□□ -0.54
LIG1-209ENST00000596104 GJB5O95377 273 aa11.66□□□□□ -0.54
LIG1-209ENST00000596104 F2P00734 622 aa11.66□□□□□ -0.54
LIG1-209ENST00000596104 HOXD8P13378 290 aaPredicted RBP11.66□□□□□ -0.54
LIG1-209ENST00000596104 PSEN2P49810 448 aa11.66□□□□□ -0.54
LIG1-209ENST00000596104 NT5C2P49902 561 aa11.66□□□□□ -0.54
LIG1-209ENST00000596104 HDAC1Q13547 482 aaPredicted RBP11.66□□□□□ -0.54
LIG1-209ENST00000596104 DGKDQ16760 1214 aa11.66□□□□□ -0.54
LIG1-209ENST00000596104 QRICH1Q2TAL8 776 aa11.66□□□□□ -0.54
LIG1-209ENST00000596104 ASPRV1Q53RT3 343 aa11.66□□□□□ -0.54
LIG1-209ENST00000596104 CHST3Q7LGC8 479 aa11.66□□□□□ -0.54
LIG1-209ENST00000596104 MCF2L2Q86YR7 1114 aa11.66□□□□□ -0.54
LIG1-209ENST00000596104 GDPD5Q8WTR4 605 aa11.66□□□□□ -0.54
LIG1-209ENST00000596104 KHSRPQ92945 711 aaKnown RBP eCLIP11.66□□□□□ -0.54
LIG1-209ENST00000596104 WNT8BQ93098 351 aa11.66□□□□□ -0.54
LIG1-209ENST00000596104 FAM122AQ96E09 287 aa11.66□□□□□ -0.54
LIG1-209ENST00000596104 RMDN3Q96TC7 470 aa11.66□□□□□ -0.54
LIG1-209ENST00000596104 LRFN3Q9BTN0 628 aa11.66□□□□□ -0.54
LIG1-209ENST00000596104 SUGCTQ9HAC7 445 aa11.66□□□□□ -0.54
LIG1-209ENST00000596104 TET1Q8NFU7 2136 aa11.66□□□□□ -0.54
LIG1-209ENST00000596104 LINC01553A4QN01 128 aa11.65□□□□□ -0.54
LIG1-209ENST00000596104 OPLAHO14841 1288 aa11.65□□□□□ -0.54
LIG1-209ENST00000596104 KDM4AO75164 1064 aa11.65□□□□□ -0.54
LIG1-209ENST00000596104 EIF3JO75822 258 aaKnown RBP11.65□□□□□ -0.54
LIG1-209ENST00000596104 NR3C2P08235 984 aa11.65□□□□□ -0.54
LIG1-209ENST00000596104 EIF2AK2P19525 551 aaKnown RBP11.65□□□□□ -0.54
LIG1-209ENST00000596104 ERVK-21P61565 698 aa11.65□□□□□ -0.54
LIG1-209ENST00000596104 GHRHRQ02643 423 aa11.65□□□□□ -0.54
LIG1-209ENST00000596104 PTK7Q13308 1070 aa11.65□□□□□ -0.54
LIG1-209ENST00000596104 MKRN4PQ13434 485 aaPredicted RBP11.65□□□□□ -0.54
LIG1-209ENST00000596104 HIC1Q14526 733 aa11.65□□□□□ -0.54
LIG1-209ENST00000596104 MBTPS1Q14703 1052 aa11.65□□□□□ -0.54
LIG1-209ENST00000596104 IQCA1Q86XH1 822 aa11.65□□□□□ -0.54
LIG1-209ENST00000596104 PPTC7Q8NI37 304 aa11.65□□□□□ -0.54
LIG1-209ENST00000596104 RAD9AQ99638 391 aa11.65□□□□□ -0.54
LIG1-209ENST00000596104 ZBED2Q9BTP6 218 aa11.65□□□□□ -0.54
LIG1-209ENST00000596104 JMJD4Q9H9V9 463 aa11.65□□□□□ -0.54
LIG1-209ENST00000596104 PXMP2Q9NR77 195 aa11.65□□□□□ -0.54
LIG1-209ENST00000596104 MRPL11Q9Y3B7 192 aaKnown RBP11.65□□□□□ -0.54
LIG1-209ENST00000596104 TRIM6-TRIM34B2RNG4 842 aa11.64□□□□□ -0.55
LIG1-209ENST00000596104 B4E1Z4 1266 aa11.64□□□□□ -0.55
LIG1-209ENST00000596104 ZNF213O14771 459 aa11.64□□□□□ -0.55
LIG1-209ENST00000596104 EFCAB14O75071 495 aa11.64□□□□□ -0.55
LIG1-209ENST00000596104 RGS20O76081 388 aa11.64□□□□□ -0.55
LIG1-209ENST00000596104 ZNF286BP0CG31 522 aa11.64□□□□□ -0.55
LIG1-209ENST00000596104 SDSP20132 328 aa11.64□□□□□ -0.55
LIG1-209ENST00000596104 HOXD11P31277 338 aaPredicted RBP11.64□□□□□ -0.55
LIG1-209ENST00000596104 HSD17B4P51659 736 aa11.64□□□□□ -0.55
LIG1-209ENST00000596104 RRP1P56182 461 aaKnown RBP11.64□□□□□ -0.55
LIG1-209ENST00000596104 ZNF200P98182 395 aaPredicted RBP11.64□□□□□ -0.55
LIG1-209ENST00000596104 LAMC2Q13753 1193 aa11.64□□□□□ -0.55
LIG1-209ENST00000596104 MFSD10Q14728 455 aa11.64□□□□□ -0.55
LIG1-209ENST00000596104 KIAA0753Q2KHM9 967 aa11.64□□□□□ -0.55
LIG1-209ENST00000596104 CCDC178Q5BJE1 867 aa11.64□□□□□ -0.55
LIG1-209ENST00000596104 ZNF618Q5T7W0 954 aa11.64□□□□□ -0.55
LIG1-209ENST00000596104 ARHGEF16Q5VV41 709 aa11.64□□□□□ -0.55
LIG1-209ENST00000596104 FBXO11Q86XK2 927 aa11.64□□□□□ -0.55
LIG1-209ENST00000596104 C7orf31Q8N865 590 aa11.64□□□□□ -0.55
LIG1-209ENST00000596104 ENAHQ8N8S7 591 aaPredicted RBP11.64□□□□□ -0.55
LIG1-209ENST00000596104 TGS1Q96RS0 853 aaKnown RBP11.64□□□□□ -0.55
LIG1-209ENST00000596104 CRBNQ96SW2 442 aa11.64□□□□□ -0.55
LIG1-209ENST00000596104 ZSCAN10Q96SZ4 725 aaPredicted RBP11.64□□□□□ -0.55
LIG1-209ENST00000596104 ALG1Q9BT22 464 aa11.64□□□□□ -0.55
LIG1-209ENST00000596104 KATNAL1Q9BW62 490 aa11.64□□□□□ -0.55
LIG1-209ENST00000596104 LNPKQ9C0E8 428 aa11.64□□□□□ -0.55
LIG1-209ENST00000596104 KAT14Q9H8E8 782 aa11.64□□□□□ -0.55
LIG1-209ENST00000596104 CD320Q9NPF0 282 aa11.64□□□□□ -0.55
LIG1-209ENST00000596104 C11orf16Q9NQ32 467 aa11.64□□□□□ -0.55
LIG1-209ENST00000596104 ARIH1Q9Y4X5 557 aaPredicted RBP11.64□□□□□ -0.55
LIG1-209ENST00000596104 MRVI1Q9Y6F6 885 aa11.64□□□□□ -0.55
LIG1-209ENST00000596104 TCF20Q9UGU0 1960 aaKnown RBP11.64□□□□□ -0.55
LIG1-209ENST00000596104 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP11.63□□□□□ -0.55
LIG1-209ENST00000596104 CFBP00751 764 aa11.63□□□□□ -0.55
LIG1-209ENST00000596104 MFAP1P55081 439 aaKnown RBP11.63□□□□□ -0.55
LIG1-209ENST00000596104 IKBKEQ14164 716 aa11.63□□□□□ -0.55
LIG1-209ENST00000596104 TMEM31Q5JXX7 168 aa11.63□□□□□ -0.55
LIG1-209ENST00000596104 RILPL2Q969X0 211 aa11.63□□□□□ -0.55
LIG1-209ENST00000596104 MTMR8Q96EF0 704 aa11.63□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 29.1 ms