RNA–Protein interactions for RNA: ENST00000594759.5

LIG1-207, Transcript of DNA ligase 1, humanhuman

TSL 1 (best)

Gene LIG1, Length 4,102 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-207ENST00000594759 ZNF711Q9Y462 761 aa13.44□□□□□ -0.26
LIG1-207ENST00000594759 CPS1P31327 1500 aa13.44□□□□□ -0.26
LIG1-207ENST00000594759 RANBP6O60518 1105 aaKnown RBP13.44□□□□□ -0.26
LIG1-207ENST00000594759 NQO1P15559 274 aaKnown RBP13.44□□□□□ -0.26
LIG1-207ENST00000594759 EIF4A3P38919 411 aaKnown RBP13.44□□□□□ -0.26
LIG1-207ENST00000594759 MAP3K12Q12852 859 aa13.44□□□□□ -0.26
LIG1-207ENST00000594759 RCN2Q14257 317 aa13.44□□□□□ -0.26
LIG1-207ENST00000594759 PAPD7Q5XG87 772 aaKnown RBP13.44□□□□□ -0.26
LIG1-207ENST00000594759 CRELD2Q6UXH1 353 aaPredicted RBP13.44□□□□□ -0.26
LIG1-207ENST00000594759 RAB3IL1Q8TBN0 382 aa13.44□□□□□ -0.26
LIG1-207ENST00000594759 AENQ8WTP8 325 aaKnown RBP13.44□□□□□ -0.26
LIG1-207ENST00000594759 TMEM165Q9HC07 324 aa13.44□□□□□ -0.26
LIG1-207ENST00000594759 ANKIB1Q9P2G1 1089 aa13.44□□□□□ -0.26
LIG1-207ENST00000594759 ASAP1Q9ULH1 1129 aa13.44□□□□□ -0.26
LIG1-207ENST00000594759 PPP1R9AQ9ULJ8 1098 aa13.44□□□□□ -0.26
LIG1-207ENST00000594759 LEMD3Q9Y2U8 911 aa13.44□□□□□ -0.26
LIG1-207ENST00000594759 hCG_1642624A0A1W2PR95 340 aa13.44□□□□□ -0.26
LIG1-207ENST00000594759 MAP3K7O43318 606 aa13.44□□□□□ -0.26
LIG1-207ENST00000594759 DEXIO95424 95 aa13.44□□□□□ -0.26
LIG1-207ENST00000594759 EPB41P11171 864 aaKnown RBP13.44□□□□□ -0.26
LIG1-207ENST00000594759 SLC5A1P13866 664 aa13.44□□□□□ -0.26
LIG1-207ENST00000594759 EEF1GP26641 437 aaKnown RBP13.44□□□□□ -0.26
LIG1-207ENST00000594759 PDE4DQ08499 809 aa13.44□□□□□ -0.26
LIG1-207ENST00000594759 SPATA21Q7Z572 469 aa13.44□□□□□ -0.26
LIG1-207ENST00000594759 DNAJC9Q8WXX5 260 aa13.44□□□□□ -0.26
LIG1-207ENST00000594759 DYDC2Q96IM9 177 aa13.44□□□□□ -0.26
LIG1-207ENST00000594759 HIC2Q96JB3 615 aa13.44□□□□□ -0.26
LIG1-207ENST00000594759 GPAA1O43292 621 aa13.43□□□□□ -0.26
LIG1-207ENST00000594759 ZNF449Q6P9G9 518 aa13.43□□□□□ -0.26
LIG1-207ENST00000594759 AGAP11Q8TF27 550 aa13.43□□□□□ -0.26
LIG1-207ENST00000594759 HDAC7Q8WUI4 952 aa13.43□□□□□ -0.26
LIG1-207ENST00000594759 SYMPKQ92797 1274 aaKnown RBP13.43□□□□□ -0.26
LIG1-207ENST00000594759 RWDD2AQ9UIY3 292 aa13.43□□□□□ -0.26
LIG1-207ENST00000594759 GHRP10912 638 aa13.43□□□□□ -0.26
LIG1-207ENST00000594759 KIF11P52732 1056 aa13.43□□□□□ -0.26
LIG1-207ENST00000594759 HS2ST1Q7LGA3 356 aa13.43□□□□□ -0.26
LIG1-207ENST00000594759 TMTC2Q8N394 836 aa13.43□□□□□ -0.26
LIG1-207ENST00000594759 MOV10L1Q9BXT6 1211 aaKnown RBP13.43□□□□□ -0.26
LIG1-207ENST00000594759 RBM12Q9NTZ6 932 aaKnown RBP13.43□□□□□ -0.26
LIG1-207ENST00000594759 VPS54Q9P1Q0 977 aa13.43□□□□□ -0.26
LIG1-207ENST00000594759 C2CD2Q9Y426 696 aa13.43□□□□□ -0.26
LIG1-207ENST00000594759 FDPSP14324 419 aaKnown RBP13.43□□□□□ -0.26
LIG1-207ENST00000594759 CDC27P30260 824 aa13.43□□□□□ -0.26
LIG1-207ENST00000594759 CAVIN4Q5BKX8 364 aa13.43□□□□□ -0.26
LIG1-207ENST00000594759 FYB2Q5VWT5 728 aa13.43□□□□□ -0.26
LIG1-207ENST00000594759 TMEM139Q8IV31 216 aa13.43□□□□□ -0.26
LIG1-207ENST00000594759 TSEN2Q8NCE0 465 aaKnown RBP13.43□□□□□ -0.26
LIG1-207ENST00000594759 TMEM87BQ96K49 555 aa13.43□□□□□ -0.26
LIG1-207ENST00000594759 PPP1R1BQ9UD71 204 aaPredicted RBP13.43□□□□□ -0.26
LIG1-207ENST00000594759 FBXL5Q9UKA1 691 aa13.43□□□□□ -0.26
LIG1-207ENST00000594759 JAG2Q9Y219 1238 aa13.43□□□□□ -0.26
LIG1-207ENST00000594759 ADAMTS13Q76LX8 1427 aa13.43□□□□□ -0.26
LIG1-207ENST00000594759 ADGRB2O60241 1585 aa13.43□□□□□ -0.26
LIG1-207ENST00000594759 KLHL30Q0D2K2 578 aa13.42□□□□□ -0.26
LIG1-207ENST00000594759 ANKRD20A2Q5SQ80 823 aa13.42□□□□□ -0.26
LIG1-207ENST00000594759 ANKRD20A1Q5TYW2 823 aa13.42□□□□□ -0.26
LIG1-207ENST00000594759 ANKRD20A3Q5VUR7 823 aa13.42□□□□□ -0.26
LIG1-207ENST00000594759 CATIPQ7Z7H3 387 aa13.42□□□□□ -0.26
LIG1-207ENST00000594759 SCYL3Q8IZE3 742 aa13.42□□□□□ -0.26
LIG1-207ENST00000594759 EPSTI1Q96J88 318 aa13.42□□□□□ -0.26
LIG1-207ENST00000594759 KRT23Q9C075 422 aa13.42□□□□□ -0.26
LIG1-207ENST00000594759 ZNF219Q9P2Y4 722 aaPredicted RBP13.42□□□□□ -0.26
LIG1-207ENST00000594759 GRIK3Q13003 919 aa13.42□□□□□ -0.26
LIG1-207ENST00000594759 NR5A1Q13285 461 aa13.42□□□□□ -0.26
LIG1-207ENST00000594759 KRT26Q7Z3Y9 468 aa13.42□□□□□ -0.26
LIG1-207ENST00000594759 CALML4Q96GE6 196 aa13.42□□□□□ -0.26
LIG1-207ENST00000594759 GTPBP6O43824 516 aaPredicted RBP13.42□□□□□ -0.26
LIG1-207ENST00000594759 GSTA1P08263 222 aa13.42□□□□□ -0.26
LIG1-207ENST00000594759 FNTAP49354 379 aa13.42□□□□□ -0.26
LIG1-207ENST00000594759 FAM98CQ17RN3 349 aaKnown RBP13.42□□□□□ -0.26
LIG1-207ENST00000594759 SFMBT2Q5VUG0 894 aa13.42□□□□□ -0.26
LIG1-207ENST00000594759 SPTY2D1Q68D10 685 aaPredicted RBP13.42□□□□□ -0.26
LIG1-207ENST00000594759 CWF19L1Q69YN2 538 aaKnown RBP13.42□□□□□ -0.26
LIG1-207ENST00000594759 CCDC62Q6P9F0 684 aa13.42□□□□□ -0.26
LIG1-207ENST00000594759 PAGE5Q96GU1 130 aa13.42□□□□□ -0.26
LIG1-207ENST00000594759 ZMAT2Q96NC0 199 aaKnown RBP13.42□□□□□ -0.26
LIG1-207ENST00000594759 FMO2Q99518 471 aa13.42□□□□□ -0.26
LIG1-207ENST00000594759 ZCWPW1Q9H0M4 648 aa13.42□□□□□ -0.26
LIG1-207ENST00000594759 SLC39A2Q9NP94 309 aa13.42□□□□□ -0.26
LIG1-207ENST00000594759 PCDHB6Q9Y5E3 794 aa13.42□□□□□ -0.26
LIG1-207ENST00000594759 RTN3O95197 1032 aaPredicted RBP13.41□□□□□ -0.26
LIG1-207ENST00000594759 RPN1P04843 607 aaKnown RBP13.41□□□□□ -0.26
LIG1-207ENST00000594759 KCNA3P22001 575 aa13.41□□□□□ -0.26
LIG1-207ENST00000594759 PTPREP23469 700 aa13.41□□□□□ -0.26
LIG1-207ENST00000594759 MDM1Q8TC05 714 aa13.41□□□□□ -0.26
LIG1-207ENST00000594759 NEK9Q8TD19 979 aa13.41□□□□□ -0.26
LIG1-207ENST00000594759 OPTNQ96CV9 577 aa13.41□□□□□ -0.26
LIG1-207ENST00000594759 UBN2Q6ZU65 1347 aa13.41□□□□□ -0.26
LIG1-207ENST00000594759 NRXN1Q9ULB1 1477 aa13.41□□□□□ -0.26
LIG1-207ENST00000594759 CYP27B1O15528 508 aa13.41□□□□□ -0.26
LIG1-207ENST00000594759 LMNAP02545 664 aaKnown RBP13.41□□□□□ -0.26
LIG1-207ENST00000594759 PYGLP06737 847 aa13.41□□□□□ -0.26
LIG1-207ENST00000594759 PLTPP55058 493 aa13.41□□□□□ -0.26
LIG1-207ENST00000594759 TTC38Q5R3I4 469 aa13.41□□□□□ -0.26
LIG1-207ENST00000594759 MIS18BP1Q6P0N0 1132 aa13.41□□□□□ -0.26
LIG1-207ENST00000594759 LRIG3Q6UXM1 1119 aa13.41□□□□□ -0.26
LIG1-207ENST00000594759 TRIM42Q8IWZ5 723 aa13.41□□□□□ -0.26
LIG1-207ENST00000594759 ST13P4Q8IZP2 240 aaPredicted RBP13.41□□□□□ -0.26
LIG1-207ENST00000594759 MS4A14Q96JA4 679 aa13.41□□□□□ -0.26
LIG1-207ENST00000594759 AP1M1Q9BXS5 423 aa13.41□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 44.5 ms