RNA–Protein interactions for RNA: ENST00000585740.5

LIG3-204, Transcript of DNA ligase 3, humanhuman

TSL 3

Gene LIG3, Length 887 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-204ENST00000585740 ERMNQ8TAM6 284 aa12.61□□□□□ -0.39
LIG3-204ENST00000585740 HAS1Q92839 578 aa12.61□□□□□ -0.39
LIG3-204ENST00000585740 HOOK2Q96ED9 719 aa12.61□□□□□ -0.39
LIG3-204ENST00000585740 FAM20AQ96MK3 541 aa12.61□□□□□ -0.39
LIG3-204ENST00000585740 PLIN2Q99541 437 aa12.61□□□□□ -0.39
LIG3-204ENST00000585740 TMEM39BQ9GZU3 492 aa12.61□□□□□ -0.39
LIG3-204ENST00000585740 RANBP17Q9H2T7 1088 aaKnown RBP12.61□□□□□ -0.39
LIG3-204ENST00000585740 TMX1Q9H3N1 280 aa12.61□□□□□ -0.39
LIG3-204ENST00000585740 KCNMB3Q9NPA1 279 aa12.61□□□□□ -0.39
LIG3-204ENST00000585740 BMP2KQ9NSY1 1161 aaPredicted RBP12.61□□□□□ -0.39
LIG3-204ENST00000585740 MAGEC2Q9UBF1 373 aaPredicted RBP12.61□□□□□ -0.39
LIG3-204ENST00000585740 PNMA2Q9UL42 364 aa12.61□□□□□ -0.39
LIG3-204ENST00000585740 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP12.61□□□□□ -0.39
LIG3-204ENST00000585740 SBF1O95248 1867 aa12.61□□□□□ -0.39
LIG3-204ENST00000585740 KCNJ18B7U540 433 aa12.6□□□□□ -0.39
LIG3-204ENST00000585740 NFKBIEO00221 500 aa12.6□□□□□ -0.39
LIG3-204ENST00000585740 ARHGAP6O43182 974 aa12.6□□□□□ -0.39
LIG3-204ENST00000585740 FGFR1OPO95684 399 aaKnown RBP12.6□□□□□ -0.39
LIG3-204ENST00000585740 TNNT1P13805 278 aa12.6□□□□□ -0.39
LIG3-204ENST00000585740 EEF1GP26641 437 aaKnown RBP12.6□□□□□ -0.39
LIG3-204ENST00000585740 ECE1P42892 770 aa12.6□□□□□ -0.39
LIG3-204ENST00000585740 COPB1P53618 953 aaKnown RBP12.6□□□□□ -0.39
LIG3-204ENST00000585740 KCNJ12Q14500 433 aa12.6□□□□□ -0.39
LIG3-204ENST00000585740 PTPN14Q15678 1187 aa12.6□□□□□ -0.39
LIG3-204ENST00000585740 TCP11X2Q5H9J9 407 aa12.6□□□□□ -0.39
LIG3-204ENST00000585740 FAM83BQ5T0W9 1011 aa12.6□□□□□ -0.39
LIG3-204ENST00000585740 HAUS3Q68CZ6 603 aa12.6□□□□□ -0.39
LIG3-204ENST00000585740 FOXR2Q6PJQ5 311 aa12.6□□□□□ -0.39
LIG3-204ENST00000585740 APTXQ7Z2E3 356 aaKnown RBP12.6□□□□□ -0.39
LIG3-204ENST00000585740 MYRIPQ8NFW9 859 aa12.6□□□□□ -0.39
LIG3-204ENST00000585740 ACER1Q8TDN7 264 aa12.6□□□□□ -0.39
LIG3-204ENST00000585740 CRYGNQ8WXF5 182 aa12.6□□□□□ -0.39
LIG3-204ENST00000585740 CCDC51Q96ER9 411 aa12.6□□□□□ -0.39
LIG3-204ENST00000585740 NAA15Q9BXJ9 866 aaKnown RBP12.6□□□□□ -0.39
LIG3-204ENST00000585740 BLOC1S4Q9NUP1 217 aa12.6□□□□□ -0.39
LIG3-204ENST00000585740 RABGAP1Q9Y3P9 1069 aa12.6□□□□□ -0.39
LIG3-204ENST00000585740 PAXBP1Q9Y5B6 917 aa12.6□□□□□ -0.39
LIG3-204ENST00000585740 POTEMA6NI47 508 aa12.59□□□□□ -0.39
LIG3-204ENST00000585740 POTECB2RU33 542 aa12.59□□□□□ -0.39
LIG3-204ENST00000585740 AKR1B15C9JRZ8 316 aaPredicted RBP12.59□□□□□ -0.39
LIG3-204ENST00000585740 STX10O60499 249 aa12.59□□□□□ -0.39
LIG3-204ENST00000585740 CCT6AP40227 531 aaKnown RBP12.59□□□□□ -0.39
LIG3-204ENST00000585740 PBX1P40424 430 aa12.59□□□□□ -0.39
LIG3-204ENST00000585740 RASA3Q14644 834 aa12.59□□□□□ -0.39
LIG3-204ENST00000585740 NBPF9Q3BBW0 867 aa12.59□□□□□ -0.39
LIG3-204ENST00000585740 USH1GQ495M9 461 aa12.59□□□□□ -0.39
LIG3-204ENST00000585740 HSP90AA4PQ58FG1 418 aa12.59□□□□□ -0.39
LIG3-204ENST00000585740 DCAF15Q66K64 600 aa12.59□□□□□ -0.39
LIG3-204ENST00000585740 SAMD3Q8N6K7 520 aa12.59□□□□□ -0.39
LIG3-204ENST00000585740 LRRC15Q8TF66 581 aa12.59□□□□□ -0.39
LIG3-204ENST00000585740 LPAR1Q92633 364 aa12.59□□□□□ -0.39
LIG3-204ENST00000585740 P2RX5Q93086 422 aa12.59□□□□□ -0.39
LIG3-204ENST00000585740 TRIM47Q96LD4 638 aa12.59□□□□□ -0.39
LIG3-204ENST00000585740 PANX2Q96RD6 677 aa12.59□□□□□ -0.39
LIG3-204ENST00000585740 PRDM10Q9NQV6 1147 aa12.59□□□□□ -0.39
LIG3-204ENST00000585740 CREBZFQ9NS37 354 aa12.59□□□□□ -0.39
LIG3-204ENST00000585740 UQCRHLA0A096LP55 91 aa12.58□□□□□ -0.4
LIG3-204ENST00000585740 GOLGA6L9A6NEM1 432 aa12.58□□□□□ -0.4
LIG3-204ENST00000585740 MYMKA6NI61 221 aa12.58□□□□□ -0.4
LIG3-204ENST00000585740 GCOM1H8Y6P7 765 aaPredicted RBP12.58□□□□□ -0.4
LIG3-204ENST00000585740 DYNC1I1O14576 645 aa12.58□□□□□ -0.4
LIG3-204ENST00000585740 N4BP3O15049 544 aa12.58□□□□□ -0.4
LIG3-204ENST00000585740 WDR46O15213 610 aaKnown RBP12.58□□□□□ -0.4
LIG3-204ENST00000585740 ZSCAN12O43309 604 aa12.58□□□□□ -0.4
LIG3-204ENST00000585740 UQCRHP07919 91 aa12.58□□□□□ -0.4
LIG3-204ENST00000585740 POLR2MP0CAP2 368 aa12.58□□□□□ -0.4
LIG3-204ENST00000585740 ZNF76P36508 570 aa12.58□□□□□ -0.4
LIG3-204ENST00000585740 DOCK1Q14185 1865 aa12.58□□□□□ -0.4
LIG3-204ENST00000585740 MCM6Q14566 821 aa12.58□□□□□ -0.4
LIG3-204ENST00000585740 KRT31Q15323 416 aa12.58□□□□□ -0.4
LIG3-204ENST00000585740 CNGA4Q8IV77 575 aa12.58□□□□□ -0.4
LIG3-204ENST00000585740 SPICE1Q8N0Z3 855 aa12.58□□□□□ -0.4
LIG3-204ENST00000585740 C16orf45Q96MC5 204 aaPredicted RBP12.58□□□□□ -0.4
LIG3-204ENST00000585740 FEZ1Q99689 392 aa12.58□□□□□ -0.4
LIG3-204ENST00000585740 DEFB129Q9H1M3 183 aa12.58□□□□□ -0.4
LIG3-204ENST00000585740 LOXHD1Q8IVV2 1947 aa12.58□□□□□ -0.4
LIG3-204ENST00000585740 DICER1Q9UPY3 1922 aaKnown RBP12.58□□□□□ -0.4
LIG3-204ENST00000585740 FZD9O00144 591 aa12.57□□□□□ -0.4
LIG3-204ENST00000585740 CTNND1O60716 968 aaKnown RBP12.57□□□□□ -0.4
LIG3-204ENST00000585740 KIF20AO95235 890 aa12.57□□□□□ -0.4
LIG3-204ENST00000585740 FDX1P10109 184 aa12.57□□□□□ -0.4
LIG3-204ENST00000585740 SNAP25P60880 206 aa12.57□□□□□ -0.4
LIG3-204ENST00000585740 MAPK8IP2Q13387 824 aaPredicted RBP12.57□□□□□ -0.4
LIG3-204ENST00000585740 CEP135Q66GS9 1140 aa12.57□□□□□ -0.4
LIG3-204ENST00000585740 DPY19L2Q6NUT2 758 aa12.57□□□□□ -0.4
LIG3-204ENST00000585740 TTI2Q6NXR4 508 aa12.57□□□□□ -0.4
LIG3-204ENST00000585740 NYAP1Q6ZVC0 841 aa12.57□□□□□ -0.4
LIG3-204ENST00000585740 MIGA2Q7L4E1 593 aa12.57□□□□□ -0.4
LIG3-204ENST00000585740 GUF1Q8N442 669 aaKnown RBP12.57□□□□□ -0.4
LIG3-204ENST00000585740 ETNPPLQ8TBG4 499 aa12.57□□□□□ -0.4
LIG3-204ENST00000585740 BAG1Q99933 345 aaPredicted RBP12.57□□□□□ -0.4
LIG3-204ENST00000585740 RBBP6Q7Z6E9 1792 aaKnown RBP12.56□□□□□ -0.4
LIG3-204ENST00000585740 SMCHD1A6NHR9 2005 aa12.56□□□□□ -0.4
LIG3-204ENST00000585740 A0A1W2PQC6 194 aa12.56□□□□□ -0.4
LIG3-204ENST00000585740 PHF20L1A8MW92 1017 aa12.56□□□□□ -0.4
LIG3-204ENST00000585740 TEX33O43247 280 aa12.56□□□□□ -0.4
LIG3-204ENST00000585740 GTF2F1P35269 517 aaKnown RBP eCLIP12.56□□□□□ -0.4
LIG3-204ENST00000585740 CTCFP49711 727 aaPredicted RBP12.56□□□□□ -0.4
LIG3-204ENST00000585740 GMPSP49915 693 aaPredicted RBP12.56□□□□□ -0.4
LIG3-204ENST00000585740 USP14P54578 494 aa12.56□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 20.7 ms