RNA–Protein interactions for RNA: ENST00000582092.1

SS18-220, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 1 (best)

Gene SS18, Length 215 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-220ENST00000582092 CCDC174Q6PII3 467 aa10.46□□□□□ -0.73
SS18-220ENST00000582092 OTOP1Q7RTM1 612 aa10.46□□□□□ -0.73
SS18-220ENST00000582092 CABP7Q86V35 215 aa10.46□□□□□ -0.73
SS18-220ENST00000582092 LPAR1Q92633 364 aa10.46□□□□□ -0.73
SS18-220ENST00000582092 PAGE5Q96GU1 130 aa10.46□□□□□ -0.73
SS18-220ENST00000582092 WDR18Q9BV38 432 aa10.46□□□□□ -0.73
SS18-220ENST00000582092 GTPBP4Q9BZE4 634 aaKnown RBP10.46□□□□□ -0.73
SS18-220ENST00000582092 TANGO6Q9C0B7 1094 aa10.46□□□□□ -0.73
SS18-220ENST00000582092 LRRC27Q9C0I9 530 aa10.46□□□□□ -0.73
SS18-220ENST00000582092 CUEDC2Q9H467 287 aa10.46□□□□□ -0.73
SS18-220ENST00000582092 LRWD1Q9UFC0 647 aa10.46□□□□□ -0.73
SS18-220ENST00000582092 DDX25Q9UHL0 483 aaKnown RBP10.46□□□□□ -0.73
SS18-220ENST00000582092 AGTPBP1Q9UPW5 1226 aa10.46□□□□□ -0.73
SS18-220ENST00000582092 STK24Q9Y6E0 443 aa10.46□□□□□ -0.73
SS18-220ENST00000582092 ABCB11O95342 1321 aa10.45□□□□□ -0.74
SS18-220ENST00000582092 USP17L15C9J2P7 530 aa10.45□□□□□ -0.74
SS18-220ENST00000582092 USP17L13C9JLJ4 530 aa10.45□□□□□ -0.74
SS18-220ENST00000582092 USP17L11C9JVI0 530 aa10.45□□□□□ -0.74
SS18-220ENST00000582092 USP17L18D6R9N7 530 aa10.45□□□□□ -0.74
SS18-220ENST00000582092 USP17L22D6RA61 530 aa10.45□□□□□ -0.74
SS18-220ENST00000582092 USP17L17D6RBQ6 530 aa10.45□□□□□ -0.74
SS18-220ENST00000582092 USP17L19D6RCP7 530 aa10.45□□□□□ -0.74
SS18-220ENST00000582092 USP17L20D6RJB6 530 aa10.45□□□□□ -0.74
SS18-220ENST00000582092 GCOM1H8Y6P7 765 aaPredicted RBP10.45□□□□□ -0.74
SS18-220ENST00000582092 WDR46O15213 610 aaKnown RBP10.45□□□□□ -0.74
SS18-220ENST00000582092 CBFA2T2O43439 604 aa10.45□□□□□ -0.74
SS18-220ENST00000582092 ACTN4O43707 911 aaKnown RBP10.45□□□□□ -0.74
SS18-220ENST00000582092 GTPBP6O43824 516 aaPredicted RBP10.45□□□□□ -0.74
SS18-220ENST00000582092 ZBED4O75132 1171 aa10.45□□□□□ -0.74
SS18-220ENST00000582092 POLR2MP0CAP2 368 aa10.45□□□□□ -0.74
SS18-220ENST00000582092 GCLCP48506 637 aaPredicted RBP10.45□□□□□ -0.74
SS18-220ENST00000582092 JAG1P78504 1218 aa10.45□□□□□ -0.74
SS18-220ENST00000582092 LACTBP83111 547 aaPredicted RBP10.45□□□□□ -0.74
SS18-220ENST00000582092 USP17L24Q0WX57 530 aa10.45□□□□□ -0.74
SS18-220ENST00000582092 STIM1Q13586 685 aa10.45□□□□□ -0.74
SS18-220ENST00000582092 CT47A1Q5JQC4 288 aaPredicted RBP10.45□□□□□ -0.74
SS18-220ENST00000582092 KRT79Q5XKE5 535 aa10.45□□□□□ -0.74
SS18-220ENST00000582092 PPP4R3AQ6IN85 833 aa10.45□□□□□ -0.74
SS18-220ENST00000582092 USP17L6PQ6QN14 398 aa10.45□□□□□ -0.74
SS18-220ENST00000582092 USP49Q70CQ1 688 aa10.45□□□□□ -0.74
SS18-220ENST00000582092 ARHGAP30Q7Z6I6 1101 aaPredicted RBP10.45□□□□□ -0.74
SS18-220ENST00000582092 C4orf32Q8N8J7 132 aa10.45□□□□□ -0.74
SS18-220ENST00000582092 PRPF38AQ8NAV1 312 aaKnown RBP10.45□□□□□ -0.74
SS18-220ENST00000582092 PDLIM2Q96JY6 352 aa10.45□□□□□ -0.74
SS18-220ENST00000582092 GSDMAQ96QA5 445 aa10.45□□□□□ -0.74
SS18-220ENST00000582092 ANO3Q9BYT9 981 aa10.45□□□□□ -0.74
SS18-220ENST00000582092 CCSER1Q9C0I3 900 aa10.45□□□□□ -0.74
SS18-220ENST00000582092 MAGEF1Q9HAY2 307 aa10.45□□□□□ -0.74
SS18-220ENST00000582092 CPA4Q9UI42 421 aa10.45□□□□□ -0.74
SS18-220ENST00000582092 PTPN22Q9Y2R2 807 aa10.45□□□□□ -0.74
SS18-220ENST00000582092 GREB1LQ9C091 1923 aaPredicted RBP10.45□□□□□ -0.74
SS18-220ENST00000582092 LOC285556D6RIA3 1793 aa10.44□□□□□ -0.74
SS18-220ENST00000582092 ESPNB1AK53 854 aa10.44□□□□□ -0.74
SS18-220ENST00000582092 WNT7AO00755 349 aa10.44□□□□□ -0.74
SS18-220ENST00000582092 IKBKBO14920 756 aa10.44□□□□□ -0.74
SS18-220ENST00000582092 ADAMTS3O15072 1205 aa10.44□□□□□ -0.74
SS18-220ENST00000582092 NRDCO43847 1150 aa10.44□□□□□ -0.74
SS18-220ENST00000582092 PPP1R11O60927 126 aaPredicted RBP10.44□□□□□ -0.74
SS18-220ENST00000582092 CFBP00751 764 aa10.44□□□□□ -0.74
SS18-220ENST00000582092 MYL1P05976 194 aa10.44□□□□□ -0.74
SS18-220ENST00000582092 FDX1P10109 184 aa10.44□□□□□ -0.74
SS18-220ENST00000582092 HMGCS2P54868 508 aa10.44□□□□□ -0.74
SS18-220ENST00000582092 FCGRTP55899 365 aa10.44□□□□□ -0.74
SS18-220ENST00000582092 BACE1P56817 501 aa10.44□□□□□ -0.74
SS18-220ENST00000582092 IRX3P78415 501 aaPredicted RBP10.44□□□□□ -0.74
SS18-220ENST00000582092 MDM2Q00987 491 aaPredicted RBP10.44□□□□□ -0.74
SS18-220ENST00000582092 PDIA5Q14554 519 aa10.44□□□□□ -0.74
SS18-220ENST00000582092 DHX8Q14562 1220 aaKnown RBP10.44□□□□□ -0.74
SS18-220ENST00000582092 KARSQ15046 597 aaKnown RBP10.44□□□□□ -0.74
SS18-220ENST00000582092 IQCB1Q15051 598 aa10.44□□□□□ -0.74
SS18-220ENST00000582092 DPCR1Q3MIW9 517 aa10.44□□□□□ -0.74
SS18-220ENST00000582092 SH3D19Q5HYK7 790 aa10.44□□□□□ -0.74
SS18-220ENST00000582092 GPAT2Q6NUI2 795 aa10.44□□□□□ -0.74
SS18-220ENST00000582092 C17orf99Q6UX52 265 aa10.44□□□□□ -0.74
SS18-220ENST00000582092 SV2BQ7L1I2 683 aa10.44□□□□□ -0.74
SS18-220ENST00000582092 MCF2L2Q86YR7 1114 aa10.44□□□□□ -0.74
SS18-220ENST00000582092 SLFN12Q8IYM2 578 aa10.44□□□□□ -0.74
SS18-220ENST00000582092 SPC24Q8NBT2 197 aa10.44□□□□□ -0.74
SS18-220ENST00000582092 ERMNQ8TAM6 284 aa10.44□□□□□ -0.74
SS18-220ENST00000582092 GTF3C2Q8WUA4 911 aaPredicted RBP10.44□□□□□ -0.74
SS18-220ENST00000582092 SLF1Q9BQI6 1058 aa10.44□□□□□ -0.74
SS18-220ENST00000582092 KIAA1683Q9H0B3 1180 aa10.44□□□□□ -0.74
SS18-220ENST00000582092 TMEM60Q9H2L4 133 aa10.44□□□□□ -0.74
SS18-220ENST00000582092 DISC1Q9NRI5 854 aa10.44□□□□□ -0.74
SS18-220ENST00000582092 MAN1B1Q9UKM7 699 aa10.44□□□□□ -0.74
SS18-220ENST00000582092 PCDHA12Q9UN75 941 aa10.44□□□□□ -0.74
SS18-220ENST00000582092 SERPINC1P01008 464 aa10.43□□□□□ -0.74
SS18-220ENST00000582092 CYP2C8P10632 490 aa10.43□□□□□ -0.74
SS18-220ENST00000582092 PSMC4P43686 418 aa10.43□□□□□ -0.74
SS18-220ENST00000582092 CLK2P49760 499 aaKnown RBP10.43□□□□□ -0.74
SS18-220ENST00000582092 ZNF75DP51815 510 aa10.43□□□□□ -0.74
SS18-220ENST00000582092 MYL5Q02045 173 aa10.43□□□□□ -0.74
SS18-220ENST00000582092 MLLT1Q03111 559 aaPredicted RBP10.43□□□□□ -0.74
SS18-220ENST00000582092 MTMR2Q13614 643 aa10.43□□□□□ -0.74
SS18-220ENST00000582092 MOGSQ13724 837 aa10.43□□□□□ -0.74
SS18-220ENST00000582092 SLC9C1Q4G0N8 1177 aa10.43□□□□□ -0.74
SS18-220ENST00000582092 ZSCAN30Q86W11 494 aa10.43□□□□□ -0.74
SS18-220ENST00000582092 FCHSD1Q86WN1 690 aa10.43□□□□□ -0.74
SS18-220ENST00000582092 POTEDQ86YR6 584 aa10.43□□□□□ -0.74
SS18-220ENST00000582092 GRAMD1CQ8IYS0 662 aa10.43□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 13.5 ms