RNA–Protein interactions for RNA: ENST00000578595.1

SS18-209, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 3

Gene SS18, Length 406 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-209ENST00000578595 SLC26A6Q9BXS9 759 aa22.4■■□□□ 1.18
SS18-209ENST00000578595 Q9Y3F1 56 aa22.4■■□□□ 1.18
SS18-209ENST00000578595 NID2Q14112 1375 aa22.39■■□□□ 1.18
SS18-209ENST00000578595 hCG_1984214I3L0E3 225 aa22.39■■□□□ 1.17
SS18-209ENST00000578595 SORBS3O60504 671 aa22.39■■□□□ 1.17
SS18-209ENST00000578595 ADCY7P51828 1080 aa22.39■■□□□ 1.17
SS18-209ENST00000578595 FUT2Q10981 343 aa22.39■■□□□ 1.17
SS18-209ENST00000578595 LY6KQ17RY6 165 aa22.39■■□□□ 1.17
SS18-209ENST00000578595 PPP1R18Q6NYC8 613 aa22.39■■□□□ 1.17
SS18-209ENST00000578595 CHRDL2Q6WN34 429 aa22.39■■□□□ 1.17
SS18-209ENST00000578595 ZNF713Q8N859 430 aaPredicted RBP22.39■■□□□ 1.17
SS18-209ENST00000578595 MEIS2O14770 477 aa22.38■■□□□ 1.17
SS18-209ENST00000578595 GH1P01241 217 aa22.38■■□□□ 1.17
SS18-209ENST00000578595 SCG2P13521 617 aa22.38■■□□□ 1.17
SS18-209ENST00000578595 CCSAPQ6IQ19 270 aaPredicted RBP22.38■■□□□ 1.17
SS18-209ENST00000578595 CPLX2Q6PUV4 134 aaKnown RBP22.38■■□□□ 1.17
SS18-209ENST00000578595 EHMT1Q9H9B1 1298 aa22.38■■□□□ 1.17
SS18-209ENST00000578595 PCDH10Q9P2E7 1040 aa22.38■■□□□ 1.17
SS18-209ENST00000578595 RBM27Q9P2N5 1060 aaKnown RBP22.38■■□□□ 1.17
SS18-209ENST00000578595 LTBP2Q14767 1821 aa22.38■■□□□ 1.17
SS18-209ENST00000578595 A0A0U1RQG5 324 aaPredicted RBP22.37■■□□□ 1.17
SS18-209ENST00000578595 STXBP3O00186 592 aa22.37■■□□□ 1.17
SS18-209ENST00000578595 PIK3CDO00329 1044 aa22.37■■□□□ 1.17
SS18-209ENST00000578595 CTAGE5O15320 804 aa22.37■■□□□ 1.17
SS18-209ENST00000578595 CHMP4BP1P59074 171 aa22.37■■□□□ 1.17
SS18-209ENST00000578595 PFKFB3Q16875 520 aaPredicted RBP22.37■■□□□ 1.17
SS18-209ENST00000578595 GNPTABQ3T906 1256 aa22.37■■□□□ 1.17
SS18-209ENST00000578595 C8orf34Q49A92 452 aa22.37■■□□□ 1.17
SS18-209ENST00000578595 TRIM22Q8IYM9 498 aa22.37■■□□□ 1.17
SS18-209ENST00000578595 BARHL2Q9NY43 387 aa22.37■■□□□ 1.17
SS18-209ENST00000578595 RTEL1Q9NZ71 1219 aa22.37■■□□□ 1.17
SS18-209ENST00000578595 DNAH12Q6ZR08 3092 aa22.37■■□□□ 1.17
SS18-209ENST00000578595 ELP1O95163 1332 aa22.36■■□□□ 1.17
SS18-209ENST00000578595 SMCO2A6NFE2 343 aa22.36■■□□□ 1.17
SS18-209ENST00000578595 TLE2Q04725 743 aa22.36■■□□□ 1.17
SS18-209ENST00000578595 ANKRD1Q15327 319 aa22.36■■□□□ 1.17
SS18-209ENST00000578595 TYW1BQ6NUM6 668 aa22.36■■□□□ 1.17
SS18-209ENST00000578595 VSIG10LQ86VR7 867 aa22.36■■□□□ 1.17
SS18-209ENST00000578595 ZNF274Q96GC6 653 aaPredicted RBP22.36■■□□□ 1.17
SS18-209ENST00000578595 SLKQ9H2G2 1235 aaPredicted RBP22.36■■□□□ 1.17
SS18-209ENST00000578595 POLR3EQ9NVU0 708 aa22.36■■□□□ 1.17
SS18-209ENST00000578595 PRPF3O43395 683 aaKnown RBP22.35■■□□□ 1.17
SS18-209ENST00000578595 NEK4P51957 841 aa22.35■■□□□ 1.17
SS18-209ENST00000578595 AK2P54819 239 aa22.35■■□□□ 1.17
SS18-209ENST00000578595 EVCP57679 992 aa22.35■■□□□ 1.17
SS18-209ENST00000578595 SSRP1Q08945 709 aaKnown RBP22.35■■□□□ 1.17
SS18-209ENST00000578595 SNX17Q15036 470 aa22.35■■□□□ 1.17
SS18-209ENST00000578595 KCNV1Q6PIU1 500 aa22.35■■□□□ 1.17
SS18-209ENST00000578595 DHX37Q8IY37 1157 aaKnown RBP22.35■■□□□ 1.17
SS18-209ENST00000578595 CCDC12Q8WUD4 166 aaPredicted RBP22.35■■□□□ 1.17
SS18-209ENST00000578595 PGBD1Q96JS3 809 aa22.35■■□□□ 1.17
SS18-209ENST00000578595 LBHD1Q9BQE6 289 aaPredicted RBP22.35■■□□□ 1.17
SS18-209ENST00000578595 RNF26Q9BY78 433 aaPredicted RBP22.35■■□□□ 1.17
SS18-209ENST00000578595 PCDHA6Q9UN73 950 aa22.35■■□□□ 1.17
SS18-209ENST00000578595 PCDHA8Q9Y5H6 950 aa22.35■■□□□ 1.17
SS18-209ENST00000578595 FRMPD4Q14CM0 1322 aa22.34■■□□□ 1.17
SS18-209ENST00000578595 MROH7Q68CQ1 1323 aa22.34■■□□□ 1.17
SS18-209ENST00000578595 SCN10AQ9Y5Y9 1956 aa22.34■■□□□ 1.17
SS18-209ENST00000578595 DCDC2CA8MYV0 355 aa22.34■■□□□ 1.17
SS18-209ENST00000578595 CABYRO75952 493 aa22.34■■□□□ 1.17
SS18-209ENST00000578595 IFNAR1P17181 557 aa22.34■■□□□ 1.17
SS18-209ENST00000578595 PSMC6P62333 389 aa22.34■■□□□ 1.17
SS18-209ENST00000578595 CCDC62Q6P9F0 684 aa22.34■■□□□ 1.17
SS18-209ENST00000578595 AFG1LQ8WV93 481 aa22.34■■□□□ 1.17
SS18-209ENST00000578595 RIC8AQ9NPQ8 531 aa22.34■■□□□ 1.17
SS18-209ENST00000578595 DDX41Q9UJV9 622 aaKnown RBP22.34■■□□□ 1.17
SS18-209ENST00000578595 COLQQ9Y215 455 aaPredicted RBP22.34■■□□□ 1.17
SS18-209ENST00000578595 TLR3O15455 904 aaKnown RBP22.33■■□□□ 1.17
SS18-209ENST00000578595 STAM2O75886 525 aa22.33■■□□□ 1.17
SS18-209ENST00000578595 GGPS1O95749 300 aa22.33■■□□□ 1.17
SS18-209ENST00000578595 CLTBP09497 229 aa22.33■■□□□ 1.17
SS18-209ENST00000578595 NKX3-2P78367 333 aa22.33■■□□□ 1.17
SS18-209ENST00000578595 MDM2Q00987 491 aaPredicted RBP22.33■■□□□ 1.17
SS18-209ENST00000578595 FAM47CQ5HY64 1035 aa22.33■■□□□ 1.17
SS18-209ENST00000578595 C1orf53Q5VUE5 145 aa22.33■■□□□ 1.17
SS18-209ENST00000578595 PCNX4Q63HM2 1172 aa22.33■■□□□ 1.17
SS18-209ENST00000578595 GLT8D2Q9H1C3 349 aa22.33■■□□□ 1.17
SS18-209ENST00000578595 C6orf50Q9HD87 102 aa22.33■■□□□ 1.17
SS18-209ENST00000578595 ARVCFO00192 962 aa22.32■■□□□ 1.16
SS18-209ENST00000578595 RGS20O76081 388 aa22.32■■□□□ 1.16
SS18-209ENST00000578595 MMP3P08254 477 aa22.32■■□□□ 1.16
SS18-209ENST00000578595 MRPS9P82933 396 aaKnown RBP22.32■■□□□ 1.16
SS18-209ENST00000578595 ARHGAP1Q07960 439 aa22.32■■□□□ 1.16
SS18-209ENST00000578595 ITGA7Q13683 1181 aa22.32■■□□□ 1.16
SS18-209ENST00000578595 NTRK3Q16288 839 aa22.32■■□□□ 1.16
SS18-209ENST00000578595 NLRX1Q86UT6 975 aa22.32■■□□□ 1.16
SS18-209ENST00000578595 CCDC148Q8NFR7 591 aa22.32■■□□□ 1.16
SS18-209ENST00000578595 MTG1Q9BT17 334 aaPredicted RBP22.32■■□□□ 1.16
SS18-209ENST00000578595 ANO3Q9BYT9 981 aa22.32■■□□□ 1.16
SS18-209ENST00000578595 MLXIPQ9HAP2 919 aa22.32■■□□□ 1.16
SS18-209ENST00000578595 UPF2Q9HAU5 1272 aaKnown RBP22.32■■□□□ 1.16
SS18-209ENST00000578595 PDLIM7Q9NR12 457 aa22.32■■□□□ 1.16
SS18-209ENST00000578595 TMEM39AQ9NV64 488 aa22.32■■□□□ 1.16
SS18-209ENST00000578595 TMEM260Q9NX78 707 aa22.32■■□□□ 1.16
SS18-209ENST00000578595 KAT6AQ92794 2004 aa22.31■■□□□ 1.16
SS18-209ENST00000578595 CDKL5O76039 1030 aa22.31■■□□□ 1.16
SS18-209ENST00000578595 UBA1P22314 1058 aaKnown RBP22.31■■□□□ 1.16
SS18-209ENST00000578595 MAGEA10P43363 369 aaPredicted RBP22.31■■□□□ 1.16
SS18-209ENST00000578595 PURAQ00577 322 aaKnown RBP22.31■■□□□ 1.16
SS18-209ENST00000578595 LAMC2Q13753 1193 aa22.31■■□□□ 1.16
Retrieved 100 of 20,778 RNA–protein pairs in 33.5 ms