RNA–Protein interactions for RNA: ENST00000577636.5

SS18-207, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 3

Gene SS18, Length 580 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-207ENST00000577636 TSPY3P0CV98 308 aa11.69□□□□□ -0.54
SS18-207ENST00000577636 TSPY8P0CW00 308 aa11.69□□□□□ -0.54
SS18-207ENST00000577636 RASA1P20936 1047 aa11.69□□□□□ -0.54
SS18-207ENST00000577636 TFF2Q03403 129 aa11.69□□□□□ -0.54
SS18-207ENST00000577636 IKQ13123 557 aaPredicted RBP11.69□□□□□ -0.54
SS18-207ENST00000577636 ITGA7Q13683 1181 aa11.69□□□□□ -0.54
SS18-207ENST00000577636 TRIM29Q14134 588 aa11.69□□□□□ -0.54
SS18-207ENST00000577636 PPP2R2DQ66LE6 453 aa11.69□□□□□ -0.54
SS18-207ENST00000577636 EEPD1Q7L9B9 569 aa11.69□□□□□ -0.54
SS18-207ENST00000577636 RGS22Q8NE09 1264 aa11.69□□□□□ -0.54
SS18-207ENST00000577636 ZKSCAN3Q9BRR0 538 aa11.69□□□□□ -0.54
SS18-207ENST00000577636 AP5M1Q9H0R1 490 aa11.69□□□□□ -0.54
SS18-207ENST00000577636 TRPV6Q9H1D0 765 aa11.69□□□□□ -0.54
SS18-207ENST00000577636 UPF3AQ9H1J1 476 aaKnown RBP11.69□□□□□ -0.54
SS18-207ENST00000577636 NYAP2Q9P242 653 aa11.69□□□□□ -0.54
SS18-207ENST00000577636 FEM1BQ9UK73 627 aa11.69□□□□□ -0.54
SS18-207ENST00000577636 PLXNA1Q9UIW2 1896 aa11.69□□□□□ -0.54
SS18-207ENST00000577636 RFXAPO00287 272 aa11.68□□□□□ -0.54
SS18-207ENST00000577636 PRPF40AO75400 957 aaKnown RBP11.68□□□□□ -0.54
SS18-207ENST00000577636 DDAH1O94760 285 aa11.68□□□□□ -0.54
SS18-207ENST00000577636 MBD3O95983 291 aa11.68□□□□□ -0.54
SS18-207ENST00000577636 PSMC6P62333 389 aa11.68□□□□□ -0.54
SS18-207ENST00000577636 KRT85P78386 507 aa11.68□□□□□ -0.54
SS18-207ENST00000577636 AKAP17AQ02040 695 aaKnown RBP11.68□□□□□ -0.54
SS18-207ENST00000577636 SSRP1Q08945 709 aaKnown RBP11.68□□□□□ -0.54
SS18-207ENST00000577636 RTN1Q16799 776 aa11.68□□□□□ -0.54
SS18-207ENST00000577636 ZNF654Q8IZM8 581 aa11.68□□□□□ -0.54
SS18-207ENST00000577636 LRRC47Q8N1G4 583 aaKnown RBP11.68□□□□□ -0.54
SS18-207ENST00000577636 CHST13Q8NET6 341 aa11.68□□□□□ -0.54
SS18-207ENST00000577636 SCLYQ96I15 445 aa11.68□□□□□ -0.54
SS18-207ENST00000577636 C8orf76Q96K31 380 aa11.68□□□□□ -0.54
SS18-207ENST00000577636 FGD4Q96M96 766 aa11.68□□□□□ -0.54
SS18-207ENST00000577636 KAT14Q9H8E8 782 aa11.68□□□□□ -0.54
SS18-207ENST00000577636 CERS4Q9HA82 394 aa11.68□□□□□ -0.54
SS18-207ENST00000577636 SLC38A10Q9HBR0 1119 aa11.68□□□□□ -0.54
SS18-207ENST00000577636 RBM28Q9NW13 759 aaKnown RBP11.68□□□□□ -0.54
SS18-207ENST00000577636 ORC3Q9UBD5 711 aaPredicted RBP11.68□□□□□ -0.54
SS18-207ENST00000577636 FBXO40Q9UH90 709 aa11.68□□□□□ -0.54
SS18-207ENST00000577636 SLC4A7Q9Y6M7 1214 aa11.68□□□□□ -0.54
SS18-207ENST00000577636 DDX49Q9Y6V7 483 aaKnown RBP11.68□□□□□ -0.54
SS18-207ENST00000577636 BAZ2AQ9UIF9 1905 aaKnown RBP11.68□□□□□ -0.54
SS18-207ENST00000577636 TMEM232C9JQI7 657 aa11.67□□□□□ -0.54
SS18-207ENST00000577636 ATP2A1O14983 1001 aa11.67□□□□□ -0.54
SS18-207ENST00000577636 CTAGE5O15320 804 aa11.67□□□□□ -0.54
SS18-207ENST00000577636 ZEB2O60315 1214 aa11.67□□□□□ -0.54
SS18-207ENST00000577636 B4GALT4O60513 344 aa11.67□□□□□ -0.54
SS18-207ENST00000577636 CTDNEP1O95476 244 aa11.67□□□□□ -0.54
SS18-207ENST00000577636 KIF5BP33176 963 aa11.67□□□□□ -0.54
SS18-207ENST00000577636 SNAP25P60880 206 aa11.67□□□□□ -0.54
SS18-207ENST00000577636 TFAP4Q01664 338 aa11.67□□□□□ -0.54
SS18-207ENST00000577636 GNL2Q13823 731 aaKnown RBP11.67□□□□□ -0.54
SS18-207ENST00000577636 FSCN1Q16658 493 aaKnown RBP11.67□□□□□ -0.54
SS18-207ENST00000577636 PPP4R3BQ5MIZ7 849 aa11.67□□□□□ -0.54
SS18-207ENST00000577636 SLFN13Q68D06 897 aa11.67□□□□□ -0.54
SS18-207ENST00000577636 TLK2Q86UE8 772 aa11.67□□□□□ -0.54
SS18-207ENST00000577636 RAB11FIP4Q86YS3 637 aa11.67□□□□□ -0.54
SS18-207ENST00000577636 RPUSD2Q8IZ73 545 aaKnown RBP11.67□□□□□ -0.54
SS18-207ENST00000577636 CTCFLQ8NI51 663 aaPredicted RBP11.67□□□□□ -0.54
SS18-207ENST00000577636 AGBL1Q96MI9 1066 aa11.67□□□□□ -0.54
SS18-207ENST00000577636 ASTN1O14525 1302 aa11.66□□□□□ -0.54
SS18-207ENST00000577636 SOWAHBA6NEL2 793 aa11.66□□□□□ -0.54
SS18-207ENST00000577636 ASB14A6NK59 587 aa11.66□□□□□ -0.54
SS18-207ENST00000577636 CABYRO75952 493 aa11.66□□□□□ -0.54
SS18-207ENST00000577636 BMP3P12645 472 aa11.66□□□□□ -0.54
SS18-207ENST00000577636 ALAS1P13196 640 aa11.66□□□□□ -0.54
SS18-207ENST00000577636 XBP1P17861 261 aa11.66□□□□□ -0.54
SS18-207ENST00000577636 PLA2G5P39877 138 aa11.66□□□□□ -0.54
SS18-207ENST00000577636 KCNQ1P51787 676 aa11.66□□□□□ -0.54
SS18-207ENST00000577636 FOXD4L6Q3SYB3 417 aaPredicted RBP11.66□□□□□ -0.54
SS18-207ENST00000577636 FOXD4L3Q6VB84 417 aaPredicted RBP11.66□□□□□ -0.54
SS18-207ENST00000577636 DEFB128Q7Z7B8 93 aa11.66□□□□□ -0.54
SS18-207ENST00000577636 DGKHQ86XP1 1220 aa11.66□□□□□ -0.54
SS18-207ENST00000577636 ENAHQ8N8S7 591 aaPredicted RBP11.66□□□□□ -0.54
SS18-207ENST00000577636 FANCBQ8NB91 859 aa11.66□□□□□ -0.54
SS18-207ENST00000577636 CEP95Q96GE4 821 aa11.66□□□□□ -0.54
SS18-207ENST00000577636 ZNF396Q96N95 335 aaPredicted RBP11.66□□□□□ -0.54
SS18-207ENST00000577636 NOC4LQ9BVI4 516 aaKnown RBP11.66□□□□□ -0.54
SS18-207ENST00000577636 SCAND2PQ9GZW5 306 aaPredicted RBP11.66□□□□□ -0.54
SS18-207ENST00000577636 KATNBL1Q9H079 304 aa11.66□□□□□ -0.54
SS18-207ENST00000577636 ACAD9Q9H845 621 aa11.66□□□□□ -0.54
SS18-207ENST00000577636 PDGFCQ9NRA1 345 aa11.66□□□□□ -0.54
SS18-207ENST00000577636 RNF146Q9NTX7 359 aa11.66□□□□□ -0.54
SS18-207ENST00000577636 CFAP45Q9UL16 551 aa11.66□□□□□ -0.54
SS18-207ENST00000577636 MTMR7Q9Y216 660 aa11.66□□□□□ -0.54
SS18-207ENST00000577636 MYH8P13535 1937 aa11.66□□□□□ -0.54
SS18-207ENST00000577636 NID2Q14112 1375 aa11.66□□□□□ -0.54
SS18-207ENST00000577636 GRIN2DO15399 1336 aa11.65□□□□□ -0.54
SS18-207ENST00000577636 STK36Q9NRP7 1315 aa11.65□□□□□ -0.54
SS18-207ENST00000577636 GOLGA6L4A6NEF3 574 aa11.65□□□□□ -0.54
SS18-207ENST00000577636 GTPBP6O43824 516 aaPredicted RBP11.65□□□□□ -0.54
SS18-207ENST00000577636 CYP2C9P11712 490 aa11.65□□□□□ -0.54
SS18-207ENST00000577636 BMP1P13497 986 aa11.65□□□□□ -0.54
SS18-207ENST00000577636 ATP2A2P16615 1042 aaKnown RBP11.65□□□□□ -0.54
SS18-207ENST00000577636 IFNAR1P17181 557 aa11.65□□□□□ -0.54
SS18-207ENST00000577636 SMPD1P17405 629 aa11.65□□□□□ -0.54
SS18-207ENST00000577636 RXRAP19793 462 aa11.65□□□□□ -0.54
SS18-207ENST00000577636 KCNA4P22459 653 aa11.65□□□□□ -0.54
SS18-207ENST00000577636 ADD1P35611 737 aaKnown RBP11.65□□□□□ -0.54
SS18-207ENST00000577636 GSE1Q14687 1217 aa11.65□□□□□ -0.54
SS18-207ENST00000577636 SAFBQ15424 915 aaKnown RBP eCLIP11.65□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 13.8 ms