RNA–Protein interactions for RNA: ENST00000572259.1

VPS53-212, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 683 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-212ENST00000572259 LRIG2O94898 1065 aa7.56□□□□□ -1.2
VPS53-212ENST00000572259 ETFBP38117 255 aa7.56□□□□□ -1.2
VPS53-212ENST00000572259 GNALP38405 381 aa7.56□□□□□ -1.2
VPS53-212ENST00000572259 CAP2P40123 477 aa7.56□□□□□ -1.2
VPS53-212ENST00000572259 RASA3Q14644 834 aa7.56□□□□□ -1.2
VPS53-212ENST00000572259 PPP2R5EQ16537 467 aa7.56□□□□□ -1.2
VPS53-212ENST00000572259 NKG7Q16617 165 aa7.56□□□□□ -1.2
VPS53-212ENST00000572259 TNNI3KQ59H18 835 aa7.56□□□□□ -1.2
VPS53-212ENST00000572259 PRAMEF13Q5VWM6 474 aa7.56□□□□□ -1.2
VPS53-212ENST00000572259 OVOS1Q6IE37 1185 aa7.56□□□□□ -1.2
VPS53-212ENST00000572259 ARMCX6Q7L4S7 300 aa7.56□□□□□ -1.2
VPS53-212ENST00000572259 NLRC3Q7RTR2 1065 aa7.56□□□□□ -1.2
VPS53-212ENST00000572259 PTF1AQ7RTS3 328 aa7.56□□□□□ -1.2
VPS53-212ENST00000572259 UBE3DQ7Z6J8 389 aa7.56□□□□□ -1.2
VPS53-212ENST00000572259 LSRQ86X29 649 aaPredicted RBP7.56□□□□□ -1.2
VPS53-212ENST00000572259 HOMER1Q86YM7 354 aa7.56□□□□□ -1.2
VPS53-212ENST00000572259 FAM9BQ8IZU0 186 aa7.56□□□□□ -1.2
VPS53-212ENST00000572259 MFSD2AQ8NA29 543 aa7.56□□□□□ -1.2
VPS53-212ENST00000572259 SH3TC2Q8TF17 1288 aa7.56□□□□□ -1.2
VPS53-212ENST00000572259 XAGE3Q8WTP9 111 aa7.56□□□□□ -1.2
VPS53-212ENST00000572259 ATG4CQ96DT6 458 aa7.56□□□□□ -1.2
VPS53-212ENST00000572259 IL17RAQ96F46 866 aa7.56□□□□□ -1.2
VPS53-212ENST00000572259 TM9SF2Q99805 663 aa7.56□□□□□ -1.2
VPS53-212ENST00000572259 DPH2Q9BQC3 489 aaPredicted RBP7.56□□□□□ -1.2
VPS53-212ENST00000572259 FAM83CQ9BQN1 747 aa7.56□□□□□ -1.2
VPS53-212ENST00000572259 ZNF408Q9H9D4 720 aa7.56□□□□□ -1.2
VPS53-212ENST00000572259 RAXQ9Y2V3 346 aa7.56□□□□□ -1.2
VPS53-212ENST00000572259 ITGB4P16144 1822 aa7.56□□□□□ -1.2
VPS53-212ENST00000572259 KDRP35968 1356 aa7.56□□□□□ -1.2
VPS53-212ENST00000572259 DOT1LQ8TEK3 1739 aa7.55□□□□□ -1.2
VPS53-212ENST00000572259 RREB1Q92766 1687 aa7.55□□□□□ -1.2
VPS53-212ENST00000572259 MEIS3P2A8K0S8 358 aa7.55□□□□□ -1.2
VPS53-212ENST00000572259 CAND2O75155 1236 aa7.55□□□□□ -1.2
VPS53-212ENST00000572259 CST3P01034 146 aaPredicted RBP7.55□□□□□ -1.2
VPS53-212ENST00000572259 U2AF1L5P0DN76 240 aaPredicted RBP7.55□□□□□ -1.2
VPS53-212ENST00000572259 U2AF1Q01081 240 aaKnown RBP eCLIP7.55□□□□□ -1.2
VPS53-212ENST00000572259 EXOSC10Q01780 885 aaKnown RBP7.55□□□□□ -1.2
VPS53-212ENST00000572259 DHX8Q14562 1220 aaKnown RBP7.55□□□□□ -1.2
VPS53-212ENST00000572259 SLC15A2Q16348 729 aa7.55□□□□□ -1.2
VPS53-212ENST00000572259 SAMD3Q8N6K7 520 aa7.55□□□□□ -1.2
VPS53-212ENST00000572259 NAP1L4Q99733 375 aaKnown RBP7.55□□□□□ -1.2
VPS53-212ENST00000572259 APBA2Q99767 749 aa7.55□□□□□ -1.2
VPS53-212ENST00000572259 SWAP70Q9UH65 585 aa7.55□□□□□ -1.2
VPS53-212ENST00000572259 CCNL1Q9UK58 526 aaPredicted RBP7.55□□□□□ -1.2
VPS53-212ENST00000572259 DNAJA2O60884 412 aa7.54□□□□□ -1.2
VPS53-212ENST00000572259 HSP90AA1P07900 732 aaKnown RBP7.54□□□□□ -1.2
VPS53-212ENST00000572259 NME1P15531 152 aaKnown RBP7.54□□□□□ -1.2
VPS53-212ENST00000572259 GBP1P32455 592 aa7.54□□□□□ -1.2
VPS53-212ENST00000572259 GYS2P54840 703 aa7.54□□□□□ -1.2
VPS53-212ENST00000572259 CDCP2Q5VXM1 449 aa7.54□□□□□ -1.2
VPS53-212ENST00000572259 ANKS3Q6ZW76 656 aa7.54□□□□□ -1.2
VPS53-212ENST00000572259 AMOTL1Q8IY63 956 aa7.54□□□□□ -1.2
VPS53-212ENST00000572259 SLFN12Q8IYM2 578 aa7.54□□□□□ -1.2
VPS53-212ENST00000572259 FLAD1Q8NFF5 587 aa7.54□□□□□ -1.2
VPS53-212ENST00000572259 PIGBQ92521 554 aa7.54□□□□□ -1.2
VPS53-212ENST00000572259 CCDC74BQ96LY2 380 aa7.54□□□□□ -1.2
VPS53-212ENST00000572259 CNNM2Q9H8M5 875 aa7.54□□□□□ -1.2
VPS53-212ENST00000572259 SPON1Q9HCB6 807 aa7.54□□□□□ -1.2
VPS53-212ENST00000572259 TFCP2L1Q9NZI6 479 aa7.54□□□□□ -1.2
VPS53-212ENST00000572259 PRKAG3Q9UGI9 489 aa7.54□□□□□ -1.2
VPS53-212ENST00000572259 NUP188Q5SRE5 1749 aa7.54□□□□□ -1.2
VPS53-212ENST00000572259 HMX2A2RU54 273 aa7.53□□□□□ -1.2
VPS53-212ENST00000572259 GNAT3A8MTJ3 354 aa7.53□□□□□ -1.2
VPS53-212ENST00000572259 SMAD7O15105 426 aaKnown RBP7.53□□□□□ -1.2
VPS53-212ENST00000572259 DYNC1LI2O43237 492 aaPredicted RBP7.53□□□□□ -1.2
VPS53-212ENST00000572259 LDHAP00338 332 aaKnown RBP7.53□□□□□ -1.2
VPS53-212ENST00000572259 MCCP23508 829 aa7.53□□□□□ -1.2
VPS53-212ENST00000572259 MASP1P48740 699 aa7.53□□□□□ -1.2
VPS53-212ENST00000572259 CDK5R2Q13319 367 aa7.53□□□□□ -1.2
VPS53-212ENST00000572259 RAB33AQ14088 237 aa7.53□□□□□ -1.2
VPS53-212ENST00000572259 ZRSR2Q15696 482 aaKnown RBP7.53□□□□□ -1.2
VPS53-212ENST00000572259 INTS3Q68E01 1043 aaKnown RBP7.53□□□□□ -1.2
VPS53-212ENST00000572259 RUFY4Q6ZNE9 571 aa7.53□□□□□ -1.2
VPS53-212ENST00000572259 PRR23CQ6ZRP0 262 aa7.53□□□□□ -1.2
VPS53-212ENST00000572259 PCGF5Q86SE9 256 aa7.53□□□□□ -1.2
VPS53-212ENST00000572259 RTF1Q92541 710 aaKnown RBP7.53□□□□□ -1.2
VPS53-212ENST00000572259 TBC1D32Q96NH3 1257 aa7.53□□□□□ -1.2
VPS53-212ENST00000572259 KIF2CQ99661 725 aa7.53□□□□□ -1.2
VPS53-212ENST00000572259 C7orf69Q9H7B7 122 aa7.53□□□□□ -1.2
VPS53-212ENST00000572259 TPSG1Q9NRR2 321 aa7.53□□□□□ -1.2
VPS53-212ENST00000572259 FBXO9Q9UK97 447 aaPredicted RBP7.53□□□□□ -1.2
VPS53-212ENST00000572259 SRCAPQ6ZRS2 3230 aa7.53□□□□□ -1.2
VPS53-212ENST00000572259 MYBBP1AQ9BQG0 1328 aaKnown RBP7.52□□□□□ -1.2
VPS53-212ENST00000572259 PALLDQ8WX93 1383 aa7.52□□□□□ -1.21
VPS53-212ENST00000572259 IFRD1O00458 451 aaPredicted RBP7.52□□□□□ -1.21
VPS53-212ENST00000572259 RNMTO43148 476 aaKnown RBP7.52□□□□□ -1.21
VPS53-212ENST00000572259 BDNFP23560 247 aa7.52□□□□□ -1.21
VPS53-212ENST00000572259 GUCY2CP25092 1073 aa7.52□□□□□ -1.21
VPS53-212ENST00000572259 PRKAR2BP31323 418 aa7.52□□□□□ -1.21
VPS53-212ENST00000572259 POU5F1BQ06416 359 aa7.52□□□□□ -1.21
VPS53-212ENST00000572259 TEFQ10587 303 aa7.52□□□□□ -1.21
VPS53-212ENST00000572259 DOC2BQ14184 412 aa7.52□□□□□ -1.21
VPS53-212ENST00000572259 MTHFSDQ2M296 383 aaKnown RBP7.52□□□□□ -1.21
VPS53-212ENST00000572259 KRTAP1-3Q8IUG1 177 aa7.52□□□□□ -1.21
VPS53-212ENST00000572259 CYB5D2Q8WUJ1 264 aa7.52□□□□□ -1.21
VPS53-212ENST00000572259 FEZ1Q99689 392 aa7.52□□□□□ -1.21
VPS53-212ENST00000572259 MIPEPQ99797 713 aa7.52□□□□□ -1.21
VPS53-212ENST00000572259 ACTR10Q9NZ32 417 aa7.52□□□□□ -1.21
VPS53-212ENST00000572259 SFMBT1Q9UHJ3 866 aa7.52□□□□□ -1.21
VPS53-212ENST00000572259 SLC12A7Q9Y666 1083 aa7.52□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 16.1 ms