RNA–Protein interactions for RNA: ENST00000568291.2

SF3B3-211, Transcript of splicing factor 3b subunit 3, humanhuman

TSL 2

Gene SF3B3, Length 1,067 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B3-211ENST00000568291 RRP36Q96EU6 259 aaKnown RBP11□□□□□ -0.65
SF3B3-211ENST00000568291 WDR11Q9BZH6 1224 aa11□□□□□ -0.65
SF3B3-211ENST00000568291 GNEQ9Y223 722 aaKnown RBP11□□□□□ -0.65
SF3B3-211ENST00000568291 MYH6P13533 1939 aa10.99□□□□□ -0.65
SF3B3-211ENST00000568291 SCN5AQ14524 2016 aa10.99□□□□□ -0.65
SF3B3-211ENST00000568291 CDH23Q9H251 3354 aa10.99□□□□□ -0.65
SF3B3-211ENST00000568291 REC8O95072 547 aa10.99□□□□□ -0.65
SF3B3-211ENST00000568291 SEC24BO95487 1268 aa10.99□□□□□ -0.65
SF3B3-211ENST00000568291 CSF2RAP15509 400 aa10.99□□□□□ -0.65
SF3B3-211ENST00000568291 CASTP20810 708 aaKnown RBP10.99□□□□□ -0.65
SF3B3-211ENST00000568291 CDC27P30260 824 aa10.99□□□□□ -0.65
SF3B3-211ENST00000568291 ADD1P35611 737 aaKnown RBP10.99□□□□□ -0.65
SF3B3-211ENST00000568291 CHMP4BP1P59074 171 aa10.99□□□□□ -0.65
SF3B3-211ENST00000568291 PSMC6P62333 389 aa10.99□□□□□ -0.65
SF3B3-211ENST00000568291 KRT32Q14532 448 aa10.99□□□□□ -0.65
SF3B3-211ENST00000568291 GRIN2CQ14957 1233 aa10.99□□□□□ -0.65
SF3B3-211ENST00000568291 LY6KQ17RY6 165 aa10.99□□□□□ -0.65
SF3B3-211ENST00000568291 TMEM240Q5SV17 173 aa10.99□□□□□ -0.65
SF3B3-211ENST00000568291 IQSEC1Q6DN90 963 aa10.99□□□□□ -0.65
SF3B3-211ENST00000568291 PSRC1Q6PGN9 363 aaPredicted RBP10.99□□□□□ -0.65
SF3B3-211ENST00000568291 USP17L6PQ6QN14 398 aa10.99□□□□□ -0.65
SF3B3-211ENST00000568291 BLOC1S2Q6QNY1 142 aa10.99□□□□□ -0.65
SF3B3-211ENST00000568291 CXCL17Q6UXB2 119 aa10.99□□□□□ -0.65
SF3B3-211ENST00000568291 SYNE3Q6ZMZ3 975 aa10.99□□□□□ -0.65
SF3B3-211ENST00000568291 TMTC3Q6ZXV5 915 aa10.99□□□□□ -0.65
SF3B3-211ENST00000568291 SGMS1Q86VZ5 419 aa10.99□□□□□ -0.65
SF3B3-211ENST00000568291 TMEM199Q8N511 208 aa10.99□□□□□ -0.65
SF3B3-211ENST00000568291 RGS22Q8NE09 1264 aa10.99□□□□□ -0.65
SF3B3-211ENST00000568291 GPKOWQ92917 476 aaPredicted RBP eCLIP10.99□□□□□ -0.653e-6■■■■□ 21.9
SF3B3-211ENST00000568291 UPF3BQ9BZI7 483 aaKnown RBP10.99□□□□□ -0.65
SF3B3-211ENST00000568291 FAM217BQ9NTX9 383 aaPredicted RBP10.99□□□□□ -0.65
SF3B3-211ENST00000568291 PNMA2Q9UL42 364 aa10.99□□□□□ -0.65
SF3B3-211ENST00000568291 SCN10AQ9Y5Y9 1956 aa10.98□□□□□ -0.65
SF3B3-211ENST00000568291 GOLGA8AA7E2F4 631 aa10.98□□□□□ -0.65
SF3B3-211ENST00000568291 GOLGA8BA8MQT2 603 aa10.98□□□□□ -0.65
SF3B3-211ENST00000568291 GCOM1H8Y6P7 765 aaPredicted RBP10.98□□□□□ -0.65
SF3B3-211ENST00000568291 ZBTB43O43298 467 aa10.98□□□□□ -0.65
SF3B3-211ENST00000568291 NR3C2P08235 984 aa10.98□□□□□ -0.65
SF3B3-211ENST00000568291 POLR2MP0CAP2 368 aa10.98□□□□□ -0.65
SF3B3-211ENST00000568291 TXNP10599 105 aaKnown RBP10.98□□□□□ -0.65
SF3B3-211ENST00000568291 RPS6KB1P23443 525 aa10.98□□□□□ -0.65
SF3B3-211ENST00000568291 EDNRBP24530 442 aa10.98□□□□□ -0.65
SF3B3-211ENST00000568291 HSD17B4P51659 736 aa10.98□□□□□ -0.65
SF3B3-211ENST00000568291 NKX3-2P78367 333 aa10.98□□□□□ -0.65
SF3B3-211ENST00000568291 FSCN1Q16658 493 aaKnown RBP10.98□□□□□ -0.65
SF3B3-211ENST00000568291 HEATR3Q7Z4Q2 680 aa10.98□□□□□ -0.65
SF3B3-211ENST00000568291 USP38Q8NB14 1042 aa10.98□□□□□ -0.65
SF3B3-211ENST00000568291 DNERQ8NFT8 737 aa10.98□□□□□ -0.65
SF3B3-211ENST00000568291 NSUN6Q8TEA1 469 aaKnown RBP10.98□□□□□ -0.65
SF3B3-211ENST00000568291 MTA3Q9BTC8 594 aa10.98□□□□□ -0.65
SF3B3-211ENST00000568291 SPZ1Q9BXG8 430 aa10.98□□□□□ -0.65
SF3B3-211ENST00000568291 AP5M1Q9H0R1 490 aa10.98□□□□□ -0.65
SF3B3-211ENST00000568291 ZNF576Q9H609 170 aa10.98□□□□□ -0.65
SF3B3-211ENST00000568291 BCAS3Q9H6U6 928 aa10.98□□□□□ -0.65
SF3B3-211ENST00000568291 VTA1Q9NP79 307 aa10.98□□□□□ -0.65
SF3B3-211ENST00000568291 PXMP2Q9NR77 195 aa10.98□□□□□ -0.65
SF3B3-211ENST00000568291 RTEL1Q9NZ71 1219 aa10.98□□□□□ -0.65
SF3B3-211ENST00000568291 V9GY48 417 aaPredicted RBP10.98□□□□□ -0.65
SF3B3-211ENST00000568291 EYSQ5T1H1 3165 aa10.98□□□□□ -0.65
SF3B3-211ENST00000568291 NCOR1O75376 2440 aa10.97□□□□□ -0.65
SF3B3-211ENST00000568291 GRXCR1A8MXD5 290 aa10.97□□□□□ -0.65
SF3B3-211ENST00000568291 CD4P01730 458 aa10.97□□□□□ -0.65
SF3B3-211ENST00000568291 MYL3P08590 195 aa10.97□□□□□ -0.65
SF3B3-211ENST00000568291 CALM1P0DP23 149 aa10.97□□□□□ -0.65
SF3B3-211ENST00000568291 CALM2P0DP24 149 aa10.97□□□□□ -0.65
SF3B3-211ENST00000568291 CALM3P0DP25 149 aa10.97□□□□□ -0.65
SF3B3-211ENST00000568291 ACRP10323 421 aa10.97□□□□□ -0.65
SF3B3-211ENST00000568291 CYP2C18P33260 490 aa10.97□□□□□ -0.65
SF3B3-211ENST00000568291 PBX2P40425 430 aa10.97□□□□□ -0.65
SF3B3-211ENST00000568291 CCT2P78371 535 aaKnown RBP10.97□□□□□ -0.65
SF3B3-211ENST00000568291 UBE2SQ16763 222 aa10.97□□□□□ -0.65
SF3B3-211ENST00000568291 RTN1Q16799 776 aa10.97□□□□□ -0.65
SF3B3-211ENST00000568291 DUSP28Q4G0W2 176 aa10.97□□□□□ -0.65
SF3B3-211ENST00000568291 RASIP1Q5U651 963 aa10.97□□□□□ -0.65
SF3B3-211ENST00000568291 ZNF365Q70YC5 407 aa10.97□□□□□ -0.65
SF3B3-211ENST00000568291 C16orf59Q7L2K0 433 aa10.97□□□□□ -0.65
SF3B3-211ENST00000568291 OR6J1Q8NGC5 347 aa10.97□□□□□ -0.65
SF3B3-211ENST00000568291 MAP3K14Q99558 947 aa10.97□□□□□ -0.65
SF3B3-211ENST00000568291 PBX4Q9BYU1 374 aa10.97□□□□□ -0.65
SF3B3-211ENST00000568291 HIPK3Q9H422 1215 aa10.97□□□□□ -0.65
SF3B3-211ENST00000568291 NCOA5Q9HCD5 579 aaKnown RBP10.97□□□□□ -0.65
SF3B3-211ENST00000568291 SEC63Q9UGP8 760 aaKnown RBP10.97□□□□□ -0.65
SF3B3-211ENST00000568291 PRUNE2Q8WUY3 3088 aa10.96□□□□□ -0.65
SF3B3-211ENST00000568291 GRIN2DO15399 1336 aa10.96□□□□□ -0.65
SF3B3-211ENST00000568291 UMODL1Q5DID0 1318 aa10.96□□□□□ -0.65
SF3B3-211ENST00000568291 RBM47A0AV96 593 aaKnown RBP10.96□□□□□ -0.65
SF3B3-211ENST00000568291 MEIS2O14770 477 aa10.96□□□□□ -0.65
SF3B3-211ENST00000568291 ADAMTS3O15072 1205 aa10.96□□□□□ -0.65
SF3B3-211ENST00000568291 ZEB2O60315 1214 aa10.96□□□□□ -0.65
SF3B3-211ENST00000568291 CABYRO75952 493 aa10.96□□□□□ -0.65
SF3B3-211ENST00000568291 RGS20O76081 388 aa10.96□□□□□ -0.65
SF3B3-211ENST00000568291 HMGB1P09429 215 aaKnown RBP10.96□□□□□ -0.65
SF3B3-211ENST00000568291 GNAQP50148 359 aa10.96□□□□□ -0.65
SF3B3-211ENST00000568291 FUT2Q10981 343 aa10.96□□□□□ -0.65
SF3B3-211ENST00000568291 STK3Q13188 491 aa10.96□□□□□ -0.65
SF3B3-211ENST00000568291 STXBP2Q15833 593 aa10.96□□□□□ -0.65
SF3B3-211ENST00000568291 TYW1BQ6NUM6 668 aa10.96□□□□□ -0.65
SF3B3-211ENST00000568291 SLC43A3Q8NBI5 491 aa10.96□□□□□ -0.65
SF3B3-211ENST00000568291 PGBD1Q96JS3 809 aa10.96□□□□□ -0.65
SF3B3-211ENST00000568291 GAS2L1Q99501 681 aaPredicted RBP10.96□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 27.1 ms