RNA–Protein interactions for RNA: ENST00000566808.2

CDH3-205, Transcript of cadherin 3, humanhuman

TSL 5

Gene CDH3, Length 573 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDH3-205ENST00000566808 RNF207Q6ZRF8 634 aa19.87■□□□□ 0.77
CDH3-205ENST00000566808 DCAF4Q8WV16 495 aa19.87■□□□□ 0.77
CDH3-205ENST00000566808 NSUN3Q9H649 340 aaKnown RBP19.87■□□□□ 0.77
CDH3-205ENST00000566808 PNMA2Q9UL42 364 aa19.87■□□□□ 0.77
CDH3-205ENST00000566808 KMT2EQ8IZD2 1858 aa19.87■□□□□ 0.77
CDH3-205ENST00000566808 EMSYQ7Z589 1322 aa19.86■□□□□ 0.77
CDH3-205ENST00000566808 ARIH2O95376 493 aa19.86■□□□□ 0.77
CDH3-205ENST00000566808 AMHP03971 560 aa19.86■□□□□ 0.77
CDH3-205ENST00000566808 PTPN5P54829 565 aa19.86■□□□□ 0.77
CDH3-205ENST00000566808 HERC4Q5GLZ8 1057 aaPredicted RBP19.86■□□□□ 0.77
CDH3-205ENST00000566808 TCEAL5Q5H9L2 206 aa19.86■□□□□ 0.77
CDH3-205ENST00000566808 SIRT2Q8IXJ6 389 aa19.86■□□□□ 0.77
CDH3-205ENST00000566808 IFNL3Q8IZI9 196 aa19.86■□□□□ 0.77
CDH3-205ENST00000566808 AFG1LQ8WV93 481 aa19.86■□□□□ 0.77
CDH3-205ENST00000566808 ANKS1AQ92625 1134 aa19.86■□□□□ 0.77
CDH3-205ENST00000566808 PHOX2BQ99453 314 aa19.86■□□□□ 0.77
CDH3-205ENST00000566808 PATL2C9JE40 543 aaKnown RBP19.85■□□□□ 0.77
CDH3-205ENST00000566808 M0R2C6 588 aa19.85■□□□□ 0.77
CDH3-205ENST00000566808 RNF113AO15541 343 aaKnown RBP19.85■□□□□ 0.77
CDH3-205ENST00000566808 LGR5O75473 907 aa19.85■□□□□ 0.77
CDH3-205ENST00000566808 RPS6P62753 249 aaKnown RBP19.85■□□□□ 0.77
CDH3-205ENST00000566808 PTK7Q13308 1070 aa19.85■□□□□ 0.77
CDH3-205ENST00000566808 MKRN4PQ13434 485 aaPredicted RBP19.85■□□□□ 0.77
CDH3-205ENST00000566808 SYDE2Q5VT97 1194 aa19.85■□□□□ 0.77
CDH3-205ENST00000566808 BTNL9Q6UXG8 535 aa19.85■□□□□ 0.77
CDH3-205ENST00000566808 EP400NLQ6ZTU2 488 aa19.85■□□□□ 0.77
CDH3-205ENST00000566808 MYOCDQ8IZQ8 938 aa19.85■□□□□ 0.77
CDH3-205ENST00000566808 PRSS33Q8NF86 280 aa19.85■□□□□ 0.77
CDH3-205ENST00000566808 PANK1Q8TE04 598 aa19.85■□□□□ 0.77
CDH3-205ENST00000566808 CLEC4DQ8WXI8 215 aa19.85■□□□□ 0.77
CDH3-205ENST00000566808 KAT2BQ92831 832 aa19.85■□□□□ 0.77
CDH3-205ENST00000566808 PRRX2Q99811 253 aa19.85■□□□□ 0.77
CDH3-205ENST00000566808 TSPY2A6NKD2 308 aa19.84■□□□□ 0.77
CDH3-205ENST00000566808 H3BNC9 293 aa19.84■□□□□ 0.77
CDH3-205ENST00000566808 NCK2O43639 380 aa19.84■□□□□ 0.77
CDH3-205ENST00000566808 GH1P01241 217 aa19.84■□□□□ 0.77
CDH3-205ENST00000566808 PPARAQ07869 468 aa19.84■□□□□ 0.77
CDH3-205ENST00000566808 MBTPS1Q14703 1052 aa19.84■□□□□ 0.77
CDH3-205ENST00000566808 TRAF7Q6Q0C0 670 aa19.84■□□□□ 0.77
CDH3-205ENST00000566808 C7orf31Q8N865 590 aa19.84■□□□□ 0.77
CDH3-205ENST00000566808 NAPBQ9H115 298 aa19.84■□□□□ 0.77
CDH3-205ENST00000566808 ECHDC1Q9NTX5 307 aa19.84■□□□□ 0.77
CDH3-205ENST00000566808 CLDND1Q9NY35 253 aa19.84■□□□□ 0.77
CDH3-205ENST00000566808 MUTYHQ9UIF7 546 aa19.84■□□□□ 0.77
CDH3-205ENST00000566808 MTMR7Q9Y216 660 aa19.84■□□□□ 0.77
CDH3-205ENST00000566808 CASTP20810 708 aaKnown RBP19.83■□□□□ 0.77
CDH3-205ENST00000566808 SLC16A2P36021 539 aa19.83■□□□□ 0.77
CDH3-205ENST00000566808 ARHGAP1Q07960 439 aa19.83■□□□□ 0.77
CDH3-205ENST00000566808 GPM6BQ13491 265 aa19.83■□□□□ 0.77
CDH3-205ENST00000566808 SMAD2Q15796 467 aaKnown RBP19.83■□□□□ 0.77
CDH3-205ENST00000566808 TRIM71Q2Q1W2 868 aaKnown RBP19.83■□□□□ 0.77
CDH3-205ENST00000566808 CCDC62Q6P9F0 684 aa19.83■□□□□ 0.77
CDH3-205ENST00000566808 LIN28BQ6ZN17 250 aaKnown RBP eCLIP19.83■□□□□ 0.77
CDH3-205ENST00000566808 KATNAL1Q9BW62 490 aa19.83■□□□□ 0.77
CDH3-205ENST00000566808 LRRCC1Q9C099 1032 aa19.83■□□□□ 0.77
CDH3-205ENST00000566808 IL17RBQ9NRM6 502 aa19.83■□□□□ 0.77
CDH3-205ENST00000566808 DDX52Q9Y2R4 599 aaKnown RBP eCLIP19.83■□□□□ 0.77
CDH3-205ENST00000566808 WDR19Q8NEZ3 1342 aa19.82■□□□□ 0.76
CDH3-205ENST00000566808 NMT2O60551 498 aa19.82■□□□□ 0.76
CDH3-205ENST00000566808 PKN1Q16512 942 aa19.82■□□□□ 0.76
CDH3-205ENST00000566808 DGKDQ16760 1214 aa19.82■□□□□ 0.76
CDH3-205ENST00000566808 ZNF618Q5T7W0 954 aa19.82■□□□□ 0.76
CDH3-205ENST00000566808 BMP8AQ7Z5Y6 402 aa19.82■□□□□ 0.76
CDH3-205ENST00000566808 RPAINQ86UA6 219 aa19.82■□□□□ 0.76
CDH3-205ENST00000566808 FBXO11Q86XK2 927 aa19.82■□□□□ 0.76
CDH3-205ENST00000566808 HDAC6Q9UBN7 1215 aa19.82■□□□□ 0.76
CDH3-205ENST00000566808 RIF1Q5UIP0 2472 aaKnown RBP19.81■□□□□ 0.76
CDH3-205ENST00000566808 MYH7BA7E2Y1 1941 aa19.81■□□□□ 0.76
CDH3-205ENST00000566808 F2P00734 622 aa19.81■□□□□ 0.76
CDH3-205ENST00000566808 NOVP48745 357 aa19.81■□□□□ 0.76
CDH3-205ENST00000566808 FOXK2Q01167 660 aa19.81■□□□□ 0.76
CDH3-205ENST00000566808 TTBK2Q6IQ55 1244 aa19.81■□□□□ 0.76
CDH3-205ENST00000566808 YME1L1Q96TA2 773 aa19.81■□□□□ 0.76
CDH3-205ENST00000566808 PTPRZ1P23471 2315 aaPredicted RBP19.81■□□□□ 0.76
CDH3-205ENST00000566808 LTBRP36941 435 aa19.8■□□□□ 0.76
CDH3-205ENST00000566808 PSEN2P49810 448 aa19.8■□□□□ 0.76
CDH3-205ENST00000566808 CTC1Q2NKJ3 1217 aa19.8■□□□□ 0.76
CDH3-205ENST00000566808 RNF135Q8IUD6 432 aa19.8■□□□□ 0.76
CDH3-205ENST00000566808 TMEM192Q8IY95 271 aa19.8■□□□□ 0.76
CDH3-205ENST00000566808 EDAQ92838 391 aa19.8■□□□□ 0.76
CDH3-205ENST00000566808 WNT8BQ93098 351 aa19.8■□□□□ 0.76
CDH3-205ENST00000566808 GPATCH3Q96I76 525 aa19.8■□□□□ 0.76
CDH3-205ENST00000566808 SMAD4Q13485 552 aaKnown RBP19.79■□□□□ 0.76
CDH3-205ENST00000566808 MFSD10Q14728 455 aa19.79■□□□□ 0.76
CDH3-205ENST00000566808 LY6KQ17RY6 165 aa19.79■□□□□ 0.76
CDH3-205ENST00000566808 DBF4BQ8NFT6 615 aa19.79■□□□□ 0.76
CDH3-205ENST00000566808 EMID1Q96A84 441 aaPredicted RBP19.79■□□□□ 0.76
CDH3-205ENST00000566808 ZBTB40Q9NUA8 1239 aa19.79■□□□□ 0.76
CDH3-205ENST00000566808 MYH6P13533 1939 aa19.78■□□□□ 0.76
CDH3-205ENST00000566808 FAM186AA6NE01 2351 aa19.78■□□□□ 0.76
CDH3-205ENST00000566808 HAS3O00219 553 aa19.78■□□□□ 0.76
CDH3-205ENST00000566808 MBTPS2O43462 519 aa19.78■□□□□ 0.76
CDH3-205ENST00000566808 MS4A1P11836 297 aa19.78■□□□□ 0.76
CDH3-205ENST00000566808 KIAA0753Q2KHM9 967 aa19.78■□□□□ 0.76
CDH3-205ENST00000566808 PLEKHG4Q58EX7 1191 aa19.78■□□□□ 0.76
CDH3-205ENST00000566808 CHST3Q7LGC8 479 aa19.78■□□□□ 0.76
CDH3-205ENST00000566808 SUGP1Q8IWZ8 645 aaKnown RBP19.78■□□□□ 0.76
CDH3-205ENST00000566808 ALG1Q9BT22 464 aa19.78■□□□□ 0.76
CDH3-205ENST00000566808 DDX19BQ9UMR2 479 aa19.78■□□□□ 0.76
CDH3-205ENST00000566808 FRMPD2Q68DX3 1309 aaPredicted RBP19.77■□□□□ 0.76
Retrieved 100 of 20,778 RNA–protein pairs in 24.2 ms