RNA–Protein interactions for RNA: ENST00000561258.1

VPS13C-210, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 3

Gene VPS13C, Length 614 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-210ENST00000561258 CAAP1Q9H8G2 361 aa6.86□□□□□ -1.31
VPS13C-210ENST00000561258 FAM86C1Q9NVL1 165 aa6.86□□□□□ -1.31
VPS13C-210ENST00000561258 GFOD1Q9NXC2 390 aa6.86□□□□□ -1.31
VPS13C-210ENST00000561258 EIF4G1Q04637 1599 aaKnown RBP6.86□□□□□ -1.31
VPS13C-210ENST00000561258 GSG1L2A8MUP6 293 aa6.85□□□□□ -1.31
VPS13C-210ENST00000561258 PDE8AO60658 829 aa6.85□□□□□ -1.31
VPS13C-210ENST00000561258 RAPGEF3O95398 923 aa6.85□□□□□ -1.31
VPS13C-210ENST00000561258 CAPNS1P04632 268 aa6.85□□□□□ -1.31
VPS13C-210ENST00000561258 TP53P04637 393 aaPredicted RBP6.85□□□□□ -1.31
VPS13C-210ENST00000561258 PPP2R2AP63151 447 aa6.85□□□□□ -1.31
VPS13C-210ENST00000561258 HSP90AA2PQ14568 343 aaPredicted RBP6.85□□□□□ -1.31
VPS13C-210ENST00000561258 AXDND1Q5T1B0 1012 aaPredicted RBP6.85□□□□□ -1.31
VPS13C-210ENST00000561258 RPTNQ6XPR3 784 aa6.85□□□□□ -1.31
VPS13C-210ENST00000561258 RNF180Q86T96 592 aa6.85□□□□□ -1.31
VPS13C-210ENST00000561258 FERMT3Q86UX7 667 aa6.85□□□□□ -1.31
VPS13C-210ENST00000561258 ZNF227Q86WZ6 799 aa6.85□□□□□ -1.31
VPS13C-210ENST00000561258 TMEM52Q8NDY8 209 aa6.85□□□□□ -1.31
VPS13C-210ENST00000561258 CLUHP3Q96NS8 147 aa6.85□□□□□ -1.31
VPS13C-210ENST00000561258 JMJD8Q96S16 334 aa6.85□□□□□ -1.31
VPS13C-210ENST00000561258 CDC6Q99741 560 aa6.85□□□□□ -1.31
VPS13C-210ENST00000561258 APBA2Q99767 749 aa6.85□□□□□ -1.31
VPS13C-210ENST00000561258 AARSD1Q9BTE6 412 aaKnown RBP6.85□□□□□ -1.31
VPS13C-210ENST00000561258 HOMER2Q9NSB8 354 aa6.85□□□□□ -1.31
VPS13C-210ENST00000561258 AP5S1Q9NUS5 200 aa6.85□□□□□ -1.31
VPS13C-210ENST00000561258 IMPACTQ9P2X3 320 aa6.85□□□□□ -1.31
VPS13C-210ENST00000561258 APEX2Q9UBZ4 518 aa6.85□□□□□ -1.31
VPS13C-210ENST00000561258 ACSL6Q9UKU0 697 aa6.85□□□□□ -1.31
VPS13C-210ENST00000561258 G3BP2Q9UN86 482 aaKnown RBP6.85□□□□□ -1.31
VPS13C-210ENST00000561258 TRBV23-1A0A0A0MS06 115 aa6.84□□□□□ -1.31
VPS13C-210ENST00000561258 ZC3H12DA2A288 527 aaKnown RBP6.84□□□□□ -1.31
VPS13C-210ENST00000561258 ZNF205O95201 554 aa6.84□□□□□ -1.31
VPS13C-210ENST00000561258 ITGAVP06756 1048 aa6.84□□□□□ -1.31
VPS13C-210ENST00000561258 ADRB1P08588 477 aa6.84□□□□□ -1.31
VPS13C-210ENST00000561258 SOX5P35711 763 aa6.84□□□□□ -1.31
VPS13C-210ENST00000561258 LIMS1P48059 325 aa6.84□□□□□ -1.31
VPS13C-210ENST00000561258 TMEM62Q0P6H9 643 aa6.84□□□□□ -1.31
VPS13C-210ENST00000561258 ERICH6BQ5W0A0 696 aa6.84□□□□□ -1.31
VPS13C-210ENST00000561258 HEATR6Q6AI08 1181 aaKnown RBP6.84□□□□□ -1.31
VPS13C-210ENST00000561258 MRPL4Q9BYD3 311 aaKnown RBP6.84□□□□□ -1.31
VPS13C-210ENST00000561258 MKRN2Q9H000 416 aaKnown RBP6.84□□□□□ -1.31
VPS13C-210ENST00000561258 FBXL21Q9UKT6 434 aa6.84□□□□□ -1.31
VPS13C-210ENST00000561258 A0A1W2PQ45 241 aaPredicted RBP6.83□□□□□ -1.32
VPS13C-210ENST00000561258 A0A1W2PQY0 241 aa6.83□□□□□ -1.32
VPS13C-210ENST00000561258 FFAR3O14843 346 aa6.83□□□□□ -1.32
VPS13C-210ENST00000561258 FGFR1P11362 822 aa6.83□□□□□ -1.32
VPS13C-210ENST00000561258 VAV1P15498 845 aa6.83□□□□□ -1.32
VPS13C-210ENST00000561258 BMP8BP34820 402 aa6.83□□□□□ -1.32
VPS13C-210ENST00000561258 EVA1CP58658 441 aa6.83□□□□□ -1.32
VPS13C-210ENST00000561258 PLEKHN1Q494U1 663 aaPredicted RBP6.83□□□□□ -1.32
VPS13C-210ENST00000561258 ODR4Q5SWX8 454 aa6.83□□□□□ -1.32
VPS13C-210ENST00000561258 CRTC3Q6UUV7 619 aa6.83□□□□□ -1.32
VPS13C-210ENST00000561258 DDX42Q86XP3 938 aaKnown RBP eCLIP6.83□□□□□ -1.32
VPS13C-210ENST00000561258 SCUBE1Q8IWY4 988 aa6.83□□□□□ -1.32
VPS13C-210ENST00000561258 JDP2Q8WYK2 163 aa6.83□□□□□ -1.32
VPS13C-210ENST00000561258 BDH2Q9BUT1 245 aa6.83□□□□□ -1.32
VPS13C-210ENST00000561258 MAPRE3Q9UPY8 281 aa6.83□□□□□ -1.32
VPS13C-210ENST00000561258 PRICKLE3O43900 615 aaPredicted RBP6.82□□□□□ -1.32
VPS13C-210ENST00000561258 MSL3P1P0C860 447 aa6.82□□□□□ -1.32
VPS13C-210ENST00000561258 SUMO1P63165 101 aaKnown RBP6.82□□□□□ -1.32
VPS13C-210ENST00000561258 ZNF200P98182 395 aaPredicted RBP6.82□□□□□ -1.32
VPS13C-210ENST00000561258 EXOSC10Q01780 885 aaKnown RBP6.82□□□□□ -1.32
VPS13C-210ENST00000561258 PLP2Q04941 152 aa6.82□□□□□ -1.32
VPS13C-210ENST00000561258 BRDTQ58F21 947 aaPredicted RBP6.82□□□□□ -1.32
VPS13C-210ENST00000561258 DCAF15Q66K64 600 aa6.82□□□□□ -1.32
VPS13C-210ENST00000561258 FRMD5Q7Z6J6 570 aa6.82□□□□□ -1.32
VPS13C-210ENST00000561258 OSBP2Q969R2 916 aa6.82□□□□□ -1.32
VPS13C-210ENST00000561258 FGD4Q96M96 766 aa6.82□□□□□ -1.32
VPS13C-210ENST00000561258 TARS2Q9BW92 718 aaKnown RBP6.82□□□□□ -1.32
VPS13C-210ENST00000561258 LGR4Q9BXB1 951 aa6.82□□□□□ -1.32
VPS13C-210ENST00000561258 INTS7Q9NVH2 962 aaKnown RBP6.82□□□□□ -1.32
VPS13C-210ENST00000561258 LRP2BPQ9P2M1 347 aa6.82□□□□□ -1.32
VPS13C-210ENST00000561258 SUGT1Q9Y2Z0 365 aa6.82□□□□□ -1.32
VPS13C-210ENST00000561258 PCDHB12Q9Y5F1 795 aa6.82□□□□□ -1.32
VPS13C-210ENST00000561258 IRS2Q9Y4H2 1338 aa6.81□□□□□ -1.32
VPS13C-210ENST00000561258 SHOXO15266 292 aa6.81□□□□□ -1.32
VPS13C-210ENST00000561258 TBX1O43435 398 aa6.81□□□□□ -1.32
VPS13C-210ENST00000561258 PABPC1P11940 636 aaKnown RBP6.81□□□□□ -1.32
VPS13C-210ENST00000561258 SDSP20132 328 aa6.81□□□□□ -1.32
VPS13C-210ENST00000561258 IGFBP6P24592 240 aaPredicted RBP6.81□□□□□ -1.32
VPS13C-210ENST00000561258 PMLP29590 882 aa6.81□□□□□ -1.32
VPS13C-210ENST00000561258 GRIA2P42262 883 aa6.81□□□□□ -1.32
VPS13C-210ENST00000561258 MVKQ03426 396 aa6.81□□□□□ -1.32
VPS13C-210ENST00000561258 RTP5Q14D33 572 aa6.81□□□□□ -1.32
VPS13C-210ENST00000561258 ANKRD39Q53RE8 183 aa6.81□□□□□ -1.32
VPS13C-210ENST00000561258 HSP90AB2PQ58FF8 381 aa6.81□□□□□ -1.32
VPS13C-210ENST00000561258 TRIM61Q5EBN2 209 aa6.81□□□□□ -1.32
VPS13C-210ENST00000561258 CT47A1Q5JQC4 288 aaPredicted RBP6.81□□□□□ -1.32
VPS13C-210ENST00000561258 RTP2Q5QGT7 225 aa6.81□□□□□ -1.32
VPS13C-210ENST00000561258 CCDC144CPQ8IYA2 1237 aa6.81□□□□□ -1.32
VPS13C-210ENST00000561258 ADGRG2Q8IZP9 1017 aa6.81□□□□□ -1.32
VPS13C-210ENST00000561258 AFAP1L2Q8N4X5 818 aa6.81□□□□□ -1.32
VPS13C-210ENST00000561258 UBR7Q8N806 425 aa6.81□□□□□ -1.32
VPS13C-210ENST00000561258 IPO9Q96P70 1041 aaKnown RBP6.81□□□□□ -1.32
VPS13C-210ENST00000561258 MCM8Q9UJA3 840 aa6.81□□□□□ -1.32
VPS13C-210ENST00000561258 PLA2G2DQ9UNK4 145 aa6.81□□□□□ -1.32
VPS13C-210ENST00000561258 FAN1Q9Y2M0 1017 aa6.81□□□□□ -1.32
VPS13C-210ENST00000561258 THRAP3Q9Y2W1 955 aaKnown RBP6.81□□□□□ -1.32
VPS13C-210ENST00000561258 HCFC2Q9Y5Z7 792 aa6.81□□□□□ -1.32
VPS13C-210ENST00000561258 FAM83GA6ND36 823 aa6.8□□□□□ -1.32
VPS13C-210ENST00000561258 PRODHO43272 600 aa6.8□□□□□ -1.32
Retrieved 100 of 20,778 RNA–protein pairs in 43 ms