RNA–Protein interactions for RNA: ENST00000556992.1

SRP54-212, Transcript of signal recognition particle 54, humanhuman

TSL 2

Gene SRP54, Length 529 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SRP54-212ENST00000556992 CAMK2GQ13555 558 aaPredicted RBP5.62□□□□□ -1.51
SRP54-212ENST00000556992 SNW1Q13573 536 aaKnown RBP5.62□□□□□ -1.51
SRP54-212ENST00000556992 SNX17Q15036 470 aa5.62□□□□□ -1.51
SRP54-212ENST00000556992 ATF7IPQ6VMQ6 1270 aa5.62□□□□□ -1.51
SRP54-212ENST00000556992 AEBP1Q8IUX7 1158 aa5.62□□□□□ -1.51
SRP54-212ENST00000556992 FTSJ3Q8IY81 847 aaKnown RBP5.62□□□□□ -1.51
SRP54-212ENST00000556992 FBXO27Q8NI29 283 aa5.62□□□□□ -1.51
SRP54-212ENST00000556992 DACT3Q96B18 629 aaPredicted RBP5.62□□□□□ -1.51
SRP54-212ENST00000556992 SIGLEC10Q96LC7 697 aa5.62□□□□□ -1.51
SRP54-212ENST00000556992 ASPNQ9BXN1 380 aa5.62□□□□□ -1.51
SRP54-212ENST00000556992 HDAC8Q9BY41 377 aa5.62□□□□□ -1.51
SRP54-212ENST00000556992 ADAM7Q9H2U9 754 aa5.62□□□□□ -1.51
SRP54-212ENST00000556992 RWDD1Q9H446 243 aaPredicted RBP5.62□□□□□ -1.51
SRP54-212ENST00000556992 BABAM1Q9NWV8 329 aa5.62□□□□□ -1.51
SRP54-212ENST00000556992 SIRT5Q9NXA8 310 aa5.62□□□□□ -1.51
SRP54-212ENST00000556992 RTEL1Q9NZ71 1219 aa5.62□□□□□ -1.51
SRP54-212ENST00000556992 NOB1Q9ULX3 412 aaKnown RBP5.62□□□□□ -1.51
SRP54-212ENST00000556992 ZNF281Q9Y2X9 895 aa5.62□□□□□ -1.51
SRP54-212ENST00000556992 ARHGEF10O15013 1369 aa5.62□□□□□ -1.51
SRP54-212ENST00000556992 HTR3BO95264 441 aa5.61□□□□□ -1.51
SRP54-212ENST00000556992 CTSHP09668 335 aa5.61□□□□□ -1.51
SRP54-212ENST00000556992 CDR1P51861 262 aa5.61□□□□□ -1.51
SRP54-212ENST00000556992 TMEM94Q12767 1356 aa5.61□□□□□ -1.51
SRP54-212ENST00000556992 SLC14A2Q15849 920 aa5.61□□□□□ -1.51
SRP54-212ENST00000556992 MTHFSDQ2M296 383 aaKnown RBP5.61□□□□□ -1.51
SRP54-212ENST00000556992 AMOTQ4VCS5 1084 aa5.61□□□□□ -1.51
SRP54-212ENST00000556992 GGNQ86UU5 652 aa5.61□□□□□ -1.51
SRP54-212ENST00000556992 ARHGEF25Q86VW2 580 aa5.61□□□□□ -1.51
SRP54-212ENST00000556992 IGSF1Q8N6C5 1336 aa5.61□□□□□ -1.51
SRP54-212ENST00000556992 HHIPL1Q96JK4 782 aa5.61□□□□□ -1.51
SRP54-212ENST00000556992 KIF16BQ96L93 1317 aa5.61□□□□□ -1.51
SRP54-212ENST00000556992 CCDC74BQ96LY2 380 aa5.61□□□□□ -1.51
SRP54-212ENST00000556992 DDX19BQ9UMR2 479 aa5.61□□□□□ -1.51
SRP54-212ENST00000556992 SETD1BQ9UPS6 1966 aaKnown RBP5.61□□□□□ -1.51
SRP54-212ENST00000556992 SETD1AO15047 1707 aaKnown RBP5.6□□□□□ -1.51
SRP54-212ENST00000556992 RTL1A6NKG5 1358 aa5.6□□□□□ -1.51
SRP54-212ENST00000556992 TMEM82A0PJX8 343 aa5.6□□□□□ -1.51
SRP54-212ENST00000556992 SLC22A31A6NKX4 558 aa5.6□□□□□ -1.51
SRP54-212ENST00000556992 MVPQ14764 893 aaKnown RBP5.6□□□□□ -1.51
SRP54-212ENST00000556992 TAF7Q15545 349 aaPredicted RBP5.6□□□□□ -1.51
SRP54-212ENST00000556992 TAF1CQ15572 869 aaPredicted RBP5.6□□□□□ -1.51
SRP54-212ENST00000556992 TWISTNBQ3B726 338 aaPredicted RBP5.6□□□□□ -1.51
SRP54-212ENST00000556992 PLEKHO1Q53GL0 409 aaPredicted RBP5.6□□□□□ -1.51
SRP54-212ENST00000556992 MCM10Q7L590 875 aa5.6□□□□□ -1.51
SRP54-212ENST00000556992 PRRT2Q7Z6L0 340 aaPredicted RBP5.6□□□□□ -1.51
SRP54-212ENST00000556992 TMEFF1Q8IYR6 380 aa5.6□□□□□ -1.51
SRP54-212ENST00000556992 GATAD2BQ8WXI9 593 aa5.6□□□□□ -1.51
SRP54-212ENST00000556992 VWCEQ96DN2 955 aa5.6□□□□□ -1.51
SRP54-212ENST00000556992 LTV1Q96GA3 475 aaPredicted RBP5.6□□□□□ -1.51
SRP54-212ENST00000556992 TCTN2Q96GX1 697 aa5.6□□□□□ -1.51
SRP54-212ENST00000556992 MAP6Q96JE9 813 aa5.6□□□□□ -1.51
SRP54-212ENST00000556992 THUMPD2Q9BTF0 503 aaKnown RBP5.6□□□□□ -1.51
SRP54-212ENST00000556992 BCL2L13Q9BXK5 485 aa5.6□□□□□ -1.51
SRP54-212ENST00000556992 API5Q9BZZ5 524 aaKnown RBP5.6□□□□□ -1.51
SRP54-212ENST00000556992 PARP2Q9UGN5 583 aa5.6□□□□□ -1.51
SRP54-212ENST00000556992 TCFL5Q9UL49 500 aa5.6□□□□□ -1.51
SRP54-212ENST00000556992 KNDC1Q76NI1 1749 aa5.6□□□□□ -1.51
SRP54-212ENST00000556992 SIPA1L2Q9P2F8 1722 aaPredicted RBP5.6□□□□□ -1.51
SRP54-212ENST00000556992 KDRP35968 1356 aa5.59□□□□□ -1.51
SRP54-212ENST00000556992 KIAA0232Q92628 1395 aa5.59□□□□□ -1.51
SRP54-212ENST00000556992 SOS1Q07889 1333 aaPredicted RBP5.59□□□□□ -1.51
SRP54-212ENST00000556992 NPHP3Q7Z494 1330 aa5.59□□□□□ -1.51
SRP54-212ENST00000556992 KDM2BQ8NHM5 1336 aa5.59□□□□□ -1.51
SRP54-212ENST00000556992 FAM83GA6ND36 823 aa5.59□□□□□ -1.51
SRP54-212ENST00000556992 ELL2O00472 640 aaPredicted RBP5.59□□□□□ -1.51
SRP54-212ENST00000556992 N4BP3O15049 544 aa5.59□□□□□ -1.51
SRP54-212ENST00000556992 TLR3O15455 904 aaKnown RBP5.59□□□□□ -1.51
SRP54-212ENST00000556992 NRDCO43847 1150 aa5.59□□□□□ -1.51
SRP54-212ENST00000556992 SASH1O94885 1247 aa5.59□□□□□ -1.51
SRP54-212ENST00000556992 TRIM27P14373 513 aa5.59□□□□□ -1.51
SRP54-212ENST00000556992 POLR2BP30876 1174 aaKnown RBP5.59□□□□□ -1.51
SRP54-212ENST00000556992 GBP1P32455 592 aa5.59□□□□□ -1.51
SRP54-212ENST00000556992 NCKAP1LP55160 1127 aa5.59□□□□□ -1.51
SRP54-212ENST00000556992 NFKB2Q00653 900 aa5.59□□□□□ -1.51
SRP54-212ENST00000556992 XPCQ01831 940 aaPredicted RBP5.59□□□□□ -1.51
SRP54-212ENST00000556992 DCTN1Q14203 1278 aa5.59□□□□□ -1.51
SRP54-212ENST00000556992 BBS9Q3SYG4 887 aa5.59□□□□□ -1.51
SRP54-212ENST00000556992 NBPF6Q5VWK0 638 aa5.59□□□□□ -1.51
SRP54-212ENST00000556992 TMEM151BQ8IW70 566 aa5.59□□□□□ -1.51
SRP54-212ENST00000556992 C8orf58Q8NAV2 365 aa5.59□□□□□ -1.51
SRP54-212ENST00000556992 ZNF512BQ96KM6 892 aaPredicted RBP5.59□□□□□ -1.51
SRP54-212ENST00000556992 NBPF4Q96M43 638 aa5.59□□□□□ -1.51
SRP54-212ENST00000556992 ASCC2Q9H1I8 757 aaPredicted RBP5.59□□□□□ -1.51
SRP54-212ENST00000556992 MYO5BQ9ULV0 1848 aa5.59□□□□□ -1.51
SRP54-212ENST00000556992 C1orf167Q5SNV9 1468 aa5.58□□□□□ -1.52
SRP54-212ENST00000556992 MSH6P52701 1360 aa5.58□□□□□ -1.52
SRP54-212ENST00000556992 USP19O94966 1318 aa5.58□□□□□ -1.52
SRP54-212ENST00000556992 ZBTB7CA1YPR0 619 aa5.58□□□□□ -1.52
SRP54-212ENST00000556992 ANKRD33BA6NCL7 494 aa5.58□□□□□ -1.52
SRP54-212ENST00000556992 MINDY4BA8MYZ0 360 aa5.58□□□□□ -1.52
SRP54-212ENST00000556992 MEIS1O00470 390 aa5.58□□□□□ -1.52
SRP54-212ENST00000556992 UBOX5O94941 541 aa5.58□□□□□ -1.52
SRP54-212ENST00000556992 IGHDP01880 384 aa5.58□□□□□ -1.52
SRP54-212ENST00000556992 SYPP08247 313 aa5.58□□□□□ -1.52
SRP54-212ENST00000556992 RLBP1P12271 317 aa5.58□□□□□ -1.52
SRP54-212ENST00000556992 LMNB2Q03252 620 aa5.58□□□□□ -1.52
SRP54-212ENST00000556992 HDAC1Q13547 482 aaPredicted RBP5.58□□□□□ -1.52
SRP54-212ENST00000556992 EAPPQ56P03 285 aaPredicted RBP5.58□□□□□ -1.52
SRP54-212ENST00000556992 KRTAP5-3Q6L8H2 238 aa5.58□□□□□ -1.52
SRP54-212ENST00000556992 RNF111Q6ZNA4 994 aa5.58□□□□□ -1.52
Retrieved 100 of 20,778 RNA–protein pairs in 17.4 ms