RNA–Protein interactions for RNA: ENST00000556689.5

SHMT2-223, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 768 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-223ENST00000556689 IKBKEQ14164 716 aa14.83□□□□□ -0.04
SHMT2-223ENST00000556689 DGKDQ16760 1214 aa14.83□□□□□ -0.04
SHMT2-223ENST00000556689 ANKRD45Q5TZF3 282 aa14.83□□□□□ -0.04
SHMT2-223ENST00000556689 MCF2L2Q86YR7 1114 aa14.83□□□□□ -0.04
SHMT2-223ENST00000556689 C7orf31Q8N865 590 aa14.83□□□□□ -0.04
SHMT2-223ENST00000556689 TBC1D5Q92609 795 aa14.83□□□□□ -0.04
SHMT2-223ENST00000556689 DHX38Q92620 1227 aaKnown RBP14.83□□□□□ -0.04
SHMT2-223ENST00000556689 FAM227BQ96M60 508 aa14.83□□□□□ -0.04
SHMT2-223ENST00000556689 TAAR1Q96RJ0 339 aa14.83□□□□□ -0.04
SHMT2-223ENST00000556689 TGS1Q96RS0 853 aaKnown RBP14.83□□□□□ -0.04
SHMT2-223ENST00000556689 GTF2IRD1Q9UHL9 959 aa14.83□□□□□ -0.04
SHMT2-223ENST00000556689 LCTP09848 1927 aa14.82□□□□□ -0.04
SHMT2-223ENST00000556689 PI4K2BG5E9Z4 385 aa14.82□□□□□ -0.04
SHMT2-223ENST00000556689 TICAM2Q86XR7 235 aa14.82□□□□□ -0.04
SHMT2-223ENST00000556689 SYTL5Q8TDW5 730 aaPredicted RBP14.82□□□□□ -0.04
SHMT2-223ENST00000556689 GDPD5Q8WTR4 605 aa14.82□□□□□ -0.04
SHMT2-223ENST00000556689 KHSRPQ92945 711 aaKnown RBP eCLIP14.82□□□□□ -0.04
SHMT2-223ENST00000556689 CRBNQ96SW2 442 aa14.82□□□□□ -0.04
SHMT2-223ENST00000556689 RMDN3Q96TC7 470 aa14.82□□□□□ -0.04
SHMT2-223ENST00000556689 KATNAL1Q9BW62 490 aa14.82□□□□□ -0.04
SHMT2-223ENST00000556689 HDAC6Q9UBN7 1215 aa14.82□□□□□ -0.04
SHMT2-223ENST00000556689 DDX41Q9UJV9 622 aaKnown RBP14.82□□□□□ -0.04
SHMT2-223ENST00000556689 ABCB11O95342 1321 aa14.82□□□□□ -0.04
SHMT2-223ENST00000556689 SALL3Q9BXA9 1300 aa14.82□□□□□ -0.04
SHMT2-223ENST00000556689 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP14.81□□□□□ -0.04
SHMT2-223ENST00000556689 EIF3JO75822 258 aaKnown RBP14.81□□□□□ -0.04
SHMT2-223ENST00000556689 PSEN2P49810 448 aa14.81□□□□□ -0.04
SHMT2-223ENST00000556689 PTK7Q13308 1070 aa14.81□□□□□ -0.04
SHMT2-223ENST00000556689 LAMC2Q13753 1193 aa14.81□□□□□ -0.04
SHMT2-223ENST00000556689 DGKHQ86XP1 1220 aa14.81□□□□□ -0.04
SHMT2-223ENST00000556689 ESR2Q92731 530 aa14.81□□□□□ -0.04
SHMT2-223ENST00000556689 EMID1Q96A84 441 aaPredicted RBP14.81□□□□□ -0.04
SHMT2-223ENST00000556689 YTHDC1Q96MU7 727 aaKnown RBP14.81□□□□□ -0.04
SHMT2-223ENST00000556689 ALG1Q9BT22 464 aa14.81□□□□□ -0.04
SHMT2-223ENST00000556689 CPVLQ9H3G5 476 aa14.81□□□□□ -0.04
SHMT2-223ENST00000556689 RNF41Q9H4P4 317 aaPredicted RBP14.81□□□□□ -0.04
SHMT2-223ENST00000556689 MTUS1Q9ULD2 1270 aa14.81□□□□□ -0.04
SHMT2-223ENST00000556689 A0A0D9SFI3 127 aa14.8□□□□□ -0.04
SHMT2-223ENST00000556689 LINC01553A4QN01 128 aa14.8□□□□□ -0.04
SHMT2-223ENST00000556689 PDE1AP54750 535 aa14.8□□□□□ -0.04
SHMT2-223ENST00000556689 MFSD10Q14728 455 aa14.8□□□□□ -0.04
SHMT2-223ENST00000556689 CDC37Q16543 378 aaPredicted RBP14.8□□□□□ -0.04
SHMT2-223ENST00000556689 TCTN1Q2MV58 587 aa14.8□□□□□ -0.04
SHMT2-223ENST00000556689 ARHGEF16Q5VV41 709 aa14.8□□□□□ -0.04
SHMT2-223ENST00000556689 ADGRF4Q8IZF3 695 aa14.8□□□□□ -0.04
SHMT2-223ENST00000556689 ZKSCAN3Q9BRR0 538 aa14.8□□□□□ -0.04
SHMT2-223ENST00000556689 UBE2ZQ9H832 354 aaPredicted RBP14.8□□□□□ -0.04
SHMT2-223ENST00000556689 CD320Q9NPF0 282 aa14.8□□□□□ -0.04
SHMT2-223ENST00000556689 C11orf16Q9NQ32 467 aa14.8□□□□□ -0.04
SHMT2-223ENST00000556689 COL20A1Q9P218 1284 aa14.8□□□□□ -0.04
SHMT2-223ENST00000556689 MRPL11Q9Y3B7 192 aaKnown RBP14.8□□□□□ -0.04
SHMT2-223ENST00000556689 INSL6Q9Y581 213 aa14.8□□□□□ -0.04
SHMT2-223ENST00000556689 ZMYM6O95789 1325 aa14.8□□□□□ -0.04
SHMT2-223ENST00000556689 FAM86C2PA6NEL3 165 aa14.79□□□□□ -0.04
SHMT2-223ENST00000556689 HAS3O00219 553 aa14.79□□□□□ -0.04
SHMT2-223ENST00000556689 KIAA0753Q2KHM9 967 aa14.79□□□□□ -0.04
SHMT2-223ENST00000556689 LEXMQ3ZCV2 418 aa14.79□□□□□ -0.04
SHMT2-223ENST00000556689 CCDC178Q5BJE1 867 aa14.79□□□□□ -0.04
SHMT2-223ENST00000556689 ZNF618Q5T7W0 954 aa14.79□□□□□ -0.04
SHMT2-223ENST00000556689 FAM117BQ6P1L5 589 aa14.79□□□□□ -0.04
SHMT2-223ENST00000556689 ZNF589Q86UQ0 364 aaPredicted RBP14.79□□□□□ -0.04
SHMT2-223ENST00000556689 IQCA1Q86XH1 822 aa14.79□□□□□ -0.04
SHMT2-223ENST00000556689 DHX37Q8IY37 1157 aaKnown RBP14.79□□□□□ -0.04
SHMT2-223ENST00000556689 PNMA1Q8ND90 353 aa14.79□□□□□ -0.04
SHMT2-223ENST00000556689 PPTC7Q8NI37 304 aa14.79□□□□□ -0.04
SHMT2-223ENST00000556689 MRVI1Q9Y6F6 885 aa14.79□□□□□ -0.04
SHMT2-223ENST00000556689 TET1Q8NFU7 2136 aa14.78□□□□□ -0.04
SHMT2-223ENST00000556689 ZNF213O14771 459 aa14.78□□□□□ -0.04
SHMT2-223ENST00000556689 PPFIA4O75335 1185 aa14.78□□□□□ -0.04
SHMT2-223ENST00000556689 LGR5O75473 907 aa14.78□□□□□ -0.04
SHMT2-223ENST00000556689 F2P00734 622 aa14.78□□□□□ -0.04
SHMT2-223ENST00000556689 NR3C2P08235 984 aa14.78□□□□□ -0.04
SHMT2-223ENST00000556689 EIF2AK2P19525 551 aaKnown RBP14.78□□□□□ -0.04
SHMT2-223ENST00000556689 NT5C2P49902 561 aa14.78□□□□□ -0.04
SHMT2-223ENST00000556689 MFAP1P55081 439 aaKnown RBP14.78□□□□□ -0.04
SHMT2-223ENST00000556689 NMIQ13287 307 aaPredicted RBP14.78□□□□□ -0.04
SHMT2-223ENST00000556689 TRIM71Q2Q1W2 868 aaKnown RBP14.78□□□□□ -0.04
SHMT2-223ENST00000556689 TRAF7Q6Q0C0 670 aa14.78□□□□□ -0.04
SHMT2-223ENST00000556689 FBXO11Q86XK2 927 aa14.78□□□□□ -0.04
SHMT2-223ENST00000556689 TBC1D10CQ8IV04 446 aa14.78□□□□□ -0.04
SHMT2-223ENST00000556689 FAM178BQ8IXR5 827 aa14.78□□□□□ -0.04
SHMT2-223ENST00000556689 GJD3Q8N144 294 aa14.78□□□□□ -0.04
SHMT2-223ENST00000556689 GADD45GIP1Q8TAE8 222 aaPredicted RBP14.78□□□□□ -0.04
SHMT2-223ENST00000556689 KAT14Q9H8E8 782 aa14.78□□□□□ -0.04
SHMT2-223ENST00000556689 VAT1LQ9HCJ6 419 aa14.78□□□□□ -0.04
SHMT2-223ENST00000556689 CTNNA3Q9UI47 895 aa14.78□□□□□ -0.04
SHMT2-223ENST00000556689 CCDC171Q6TFL3 1326 aa14.77□□□□□ -0.04
SHMT2-223ENST00000556689 DHX16O60231 1041 aaKnown RBP14.77□□□□□ -0.05
SHMT2-223ENST00000556689 CFBP00751 764 aa14.77□□□□□ -0.05
SHMT2-223ENST00000556689 KCNA5P22460 613 aa14.77□□□□□ -0.05
SHMT2-223ENST00000556689 ZNF200P98182 395 aaPredicted RBP14.77□□□□□ -0.05
SHMT2-223ENST00000556689 QRICH1Q2TAL8 776 aa14.77□□□□□ -0.05
SHMT2-223ENST00000556689 ASPRV1Q53RT3 343 aa14.77□□□□□ -0.05
SHMT2-223ENST00000556689 LIN28BQ6ZN17 250 aaKnown RBP eCLIP14.77□□□□□ -0.054e-7■□□□□ 9.3
SHMT2-223ENST00000556689 FBXO22Q8NEZ5 403 aa14.77□□□□□ -0.05
SHMT2-223ENST00000556689 ANKS1AQ92625 1134 aa14.77□□□□□ -0.05
SHMT2-223ENST00000556689 PXMP2Q9NR77 195 aa14.77□□□□□ -0.05
SHMT2-223ENST00000556689 NEDD4P46934 1319 aa14.76□□□□□ -0.05
SHMT2-223ENST00000556689 EMSYQ7Z589 1322 aa14.76□□□□□ -0.05
SHMT2-223ENST00000556689 TRIM6-TRIM34B2RNG4 842 aa14.76□□□□□ -0.05
Retrieved 100 of 20,778 RNA–protein pairs in 28.8 ms