RNA–Protein interactions for RNA: ENST00000556461.1

VTI1B-206, Transcript of vesicle transport through interaction with t-SNAREs 1B, humanhuman

TSL 2

Gene VTI1B, Length 576 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VTI1B-206ENST00000556461 BCAS3Q9H6U6 928 aa9.37□□□□□ -0.91
VTI1B-206ENST00000556461 TMEM39AQ9NV64 488 aa9.37□□□□□ -0.91
VTI1B-206ENST00000556461 DDX41Q9UJV9 622 aaKnown RBP9.37□□□□□ -0.91
VTI1B-206ENST00000556461 TBX21Q9UL17 535 aa9.37□□□□□ -0.91
VTI1B-206ENST00000556461 LTBP2Q14767 1821 aa9.37□□□□□ -0.91
VTI1B-206ENST00000556461 FRMPD4Q14CM0 1322 aa9.36□□□□□ -0.91
VTI1B-206ENST00000556461 A6NJR5 290 aa9.36□□□□□ -0.91
VTI1B-206ENST00000556461 GOLGA8AA7E2F4 631 aa9.36□□□□□ -0.91
VTI1B-206ENST00000556461 GOLGA8BA8MQT2 603 aa9.36□□□□□ -0.91
VTI1B-206ENST00000556461 B4DLN1 442 aa9.36□□□□□ -0.91
VTI1B-206ENST00000556461 NKRFO15226 690 aaKnown RBP eCLIP9.36□□□□□ -0.91
VTI1B-206ENST00000556461 CD4P01730 458 aa9.36□□□□□ -0.91
VTI1B-206ENST00000556461 HMGB1P09429 215 aaKnown RBP9.36□□□□□ -0.91
VTI1B-206ENST00000556461 CASTP20810 708 aaKnown RBP9.36□□□□□ -0.91
VTI1B-206ENST00000556461 ADD1P35611 737 aaKnown RBP9.36□□□□□ -0.91
VTI1B-206ENST00000556461 MRPL12P52815 198 aaKnown RBP9.36□□□□□ -0.91
VTI1B-206ENST00000556461 MRPS9P82933 396 aaKnown RBP9.36□□□□□ -0.91
VTI1B-206ENST00000556461 PURAQ00577 322 aaKnown RBP9.36□□□□□ -0.91
VTI1B-206ENST00000556461 SP2Q02086 613 aa9.36□□□□□ -0.91
VTI1B-206ENST00000556461 SEMA3FQ13275 785 aa9.36□□□□□ -0.91
VTI1B-206ENST00000556461 ITGA7Q13683 1181 aa9.36□□□□□ -0.91
VTI1B-206ENST00000556461 UBE2SQ16763 222 aa9.36□□□□□ -0.91
VTI1B-206ENST00000556461 C9orf50Q5SZB4 431 aa9.36□□□□□ -0.91
VTI1B-206ENST00000556461 WWC2Q6AWC2 1192 aa9.36□□□□□ -0.91
VTI1B-206ENST00000556461 BLOC1S2Q6QNY1 142 aa9.36□□□□□ -0.91
VTI1B-206ENST00000556461 SYNE3Q6ZMZ3 975 aa9.36□□□□□ -0.91
VTI1B-206ENST00000556461 TDHQ8IZJ6 230 aa9.36□□□□□ -0.91
VTI1B-206ENST00000556461 SAMD3Q8N6K7 520 aa9.36□□□□□ -0.91
VTI1B-206ENST00000556461 TRPV6Q9H1D0 765 aa9.36□□□□□ -0.91
VTI1B-206ENST00000556461 MAP3K20Q9NYL2 800 aaKnown RBP9.36□□□□□ -0.91
VTI1B-206ENST00000556461 PRKAG2Q9UGJ0 569 aa9.36□□□□□ -0.91
VTI1B-206ENST00000556461 SEC63Q9UGP8 760 aaKnown RBP9.36□□□□□ -0.91
VTI1B-206ENST00000556461 NAP1L2Q9ULW6 460 aaPredicted RBP9.36□□□□□ -0.91
VTI1B-206ENST00000556461 UMODL1Q5DID0 1318 aa9.35□□□□□ -0.91
VTI1B-206ENST00000556461 A0A1W2PPC1 479 aa9.35□□□□□ -0.91
VTI1B-206ENST00000556461 DCDC2CA8MYV0 355 aa9.35□□□□□ -0.91
VTI1B-206ENST00000556461 ADAMTS3O15072 1205 aa9.35□□□□□ -0.91
VTI1B-206ENST00000556461 ZEB2O60315 1214 aa9.35□□□□□ -0.91
VTI1B-206ENST00000556461 B4GALT4O60513 344 aa9.35□□□□□ -0.91
VTI1B-206ENST00000556461 PPFIA3O75145 1194 aa9.35□□□□□ -0.91
VTI1B-206ENST00000556461 CABYRO75952 493 aa9.35□□□□□ -0.91
VTI1B-206ENST00000556461 GH1P01241 217 aa9.35□□□□□ -0.91
VTI1B-206ENST00000556461 MMP3P08254 477 aa9.35□□□□□ -0.91
VTI1B-206ENST00000556461 CCND2P30279 289 aa9.35□□□□□ -0.91
VTI1B-206ENST00000556461 CPT1AP50416 773 aa9.35□□□□□ -0.91
VTI1B-206ENST00000556461 TRAF1Q13077 416 aa9.35□□□□□ -0.91
VTI1B-206ENST00000556461 SHHQ15465 462 aa9.35□□□□□ -0.91
VTI1B-206ENST00000556461 NBPF20Q3BBV1 942 aa9.35□□□□□ -0.91
VTI1B-206ENST00000556461 HEATR3Q7Z4Q2 680 aa9.35□□□□□ -0.91
VTI1B-206ENST00000556461 KAT2BQ92831 832 aa9.35□□□□□ -0.91
VTI1B-206ENST00000556461 LARP6Q9BRS8 491 aaKnown RBP9.35□□□□□ -0.91
VTI1B-206ENST00000556461 MTG1Q9BT17 334 aaPredicted RBP9.35□□□□□ -0.91
VTI1B-206ENST00000556461 AGXT2Q9BYV1 514 aa9.35□□□□□ -0.91
VTI1B-206ENST00000556461 ZSWIM6Q9HCJ5 1215 aa9.35□□□□□ -0.91
VTI1B-206ENST00000556461 POLR3EQ9NVU0 708 aa9.35□□□□□ -0.91
VTI1B-206ENST00000556461 RBM28Q9NW13 759 aaKnown RBP9.35□□□□□ -0.91
VTI1B-206ENST00000556461 RTEL1Q9NZ71 1219 aa9.35□□□□□ -0.91
VTI1B-206ENST00000556461 TELO2Q9Y4R8 837 aa9.35□□□□□ -0.91
VTI1B-206ENST00000556461 MRVI1Q9Y6F6 885 aa9.35□□□□□ -0.91
VTI1B-206ENST00000556461 V9GY48 417 aaPredicted RBP9.35□□□□□ -0.91
VTI1B-206ENST00000556461 STXBP3O00186 592 aa9.34□□□□□ -0.91
VTI1B-206ENST00000556461 PIK3CDO00329 1044 aa9.34□□□□□ -0.91
VTI1B-206ENST00000556461 TIMP1P01033 207 aa9.34□□□□□ -0.91
VTI1B-206ENST00000556461 RAG1P15918 1043 aa9.34□□□□□ -0.91
VTI1B-206ENST00000556461 UBA1P22314 1058 aaKnown RBP9.34□□□□□ -0.91
VTI1B-206ENST00000556461 CYP2C18P33260 490 aa9.34□□□□□ -0.91
VTI1B-206ENST00000556461 METAP2P50579 478 aaKnown RBP eCLIP9.34□□□□□ -0.91
VTI1B-206ENST00000556461 FGD1P98174 961 aa9.34□□□□□ -0.91
VTI1B-206ENST00000556461 TOB2Q14106 344 aaPredicted RBP9.34□□□□□ -0.91
VTI1B-206ENST00000556461 FBXL16Q8N461 479 aa9.34□□□□□ -0.91
VTI1B-206ENST00000556461 SMARCC2Q8TAQ2 1214 aa9.34□□□□□ -0.91
VTI1B-206ENST00000556461 PGBD1Q96JS3 809 aa9.34□□□□□ -0.91
VTI1B-206ENST00000556461 UPF3BQ9BZI7 483 aaKnown RBP9.34□□□□□ -0.91
VTI1B-206ENST00000556461 PPP1R12CQ9BZL4 782 aa9.34□□□□□ -0.91
VTI1B-206ENST00000556461 ALDH8A1Q9H2A2 487 aaPredicted RBP9.34□□□□□ -0.91
VTI1B-206ENST00000556461 PSTPIP2Q9H939 334 aa9.34□□□□□ -0.91
VTI1B-206ENST00000556461 TRMT13Q9NUP7 481 aaKnown RBP9.34□□□□□ -0.91
VTI1B-206ENST00000556461 NID2Q14112 1375 aa9.34□□□□□ -0.91
VTI1B-206ENST00000556461 MROH7Q68CQ1 1323 aa9.33□□□□□ -0.92
VTI1B-206ENST00000556461 EPB41L2O43491 1005 aaKnown RBP9.33□□□□□ -0.92
VTI1B-206ENST00000556461 SEC24BO95487 1268 aa9.33□□□□□ -0.92
VTI1B-206ENST00000556461 GGPS1O95749 300 aa9.33□□□□□ -0.92
VTI1B-206ENST00000556461 CYP2C9P11712 490 aa9.33□□□□□ -0.92
VTI1B-206ENST00000556461 CHMP4BP1P59074 171 aa9.33□□□□□ -0.92
VTI1B-206ENST00000556461 CCT2P78371 535 aaKnown RBP9.33□□□□□ -0.92
VTI1B-206ENST00000556461 NTRK3Q16288 839 aa9.33□□□□□ -0.92
VTI1B-206ENST00000556461 HSDL1Q3SXM5 330 aa9.33□□□□□ -0.92
VTI1B-206ENST00000556461 LRIT3Q3SXY7 679 aa9.33□□□□□ -0.92
VTI1B-206ENST00000556461 CELF3Q5SZQ8 465 aaKnown RBP9.33□□□□□ -0.92
VTI1B-206ENST00000556461 MYSM1Q5VVJ2 828 aa9.33□□□□□ -0.92
VTI1B-206ENST00000556461 RUFY3Q7L099 469 aa9.33□□□□□ -0.92
VTI1B-206ENST00000556461 C16orf59Q7L2K0 433 aa9.33□□□□□ -0.92
VTI1B-206ENST00000556461 DHX37Q8IY37 1157 aaKnown RBP9.33□□□□□ -0.92
VTI1B-206ENST00000556461 CUL5Q93034 780 aa9.33□□□□□ -0.92
VTI1B-206ENST00000556461 EMID1Q96A84 441 aaPredicted RBP9.33□□□□□ -0.92
VTI1B-206ENST00000556461 VWCEQ96DN2 955 aa9.33□□□□□ -0.92
VTI1B-206ENST00000556461 INPP4AQ96PE3 977 aaPredicted RBP9.33□□□□□ -0.92
VTI1B-206ENST00000556461 NCOA5Q9HCD5 579 aaKnown RBP9.33□□□□□ -0.92
VTI1B-206ENST00000556461 TMEM260Q9NX78 707 aa9.33□□□□□ -0.92
VTI1B-206ENST00000556461 SCN10AQ9Y5Y9 1956 aa9.33□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 41.6 ms