RNA–Protein interactions for RNA: ENST00000554467.5

SHMT2-212, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 3,416 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-212ENST00000554467 TRIM9Q9C026 710 aa13.08□□□□□ -0.32
SHMT2-212ENST00000554467 TAB2Q9NYJ8 693 aa13.08□□□□□ -0.32
SHMT2-212ENST00000554467 RSPH14Q9UHP6 348 aa13.08□□□□□ -0.32
SHMT2-212ENST00000554467 PSME4Q14997 1843 aa13.08□□□□□ -0.32
SHMT2-212ENST00000554467 PDE4DQ08499 809 aa13.07□□□□□ -0.32
SHMT2-212ENST00000554467 APTXQ7Z2E3 356 aaKnown RBP13.07□□□□□ -0.32
SHMT2-212ENST00000554467 BLOC1S4Q9NUP1 217 aa13.07□□□□□ -0.32
SHMT2-212ENST00000554467 IMPACTQ9P2X3 320 aa13.07□□□□□ -0.32
SHMT2-212ENST00000554467 PCDHA12Q9UN75 941 aa13.07□□□□□ -0.32
SHMT2-212ENST00000554467 PES1O00541 588 aaKnown RBP13.07□□□□□ -0.32
SHMT2-212ENST00000554467 ERCC3P19447 782 aa13.07□□□□□ -0.32
SHMT2-212ENST00000554467 CAP2P40123 477 aa13.07□□□□□ -0.32
SHMT2-212ENST00000554467 CACNB1Q02641 598 aaPredicted RBP13.07□□□□□ -0.32
SHMT2-212ENST00000554467 SYT10Q6XYQ8 523 aa13.07□□□□□ -0.32
SHMT2-212ENST00000554467 ZNF341Q9BYN7 854 aa13.07□□□□□ -0.32
SHMT2-212ENST00000554467 SLC39A2Q9NP94 309 aa13.07□□□□□ -0.32
SHMT2-212ENST00000554467 TMX2Q9Y320 296 aa13.07□□□□□ -0.32
SHMT2-212ENST00000554467 MYMKA6NI61 221 aa13.07□□□□□ -0.32
SHMT2-212ENST00000554467 IDEP14735 1019 aa13.07□□□□□ -0.32
SHMT2-212ENST00000554467 CLCN6P51797 869 aa13.07□□□□□ -0.32
SHMT2-212ENST00000554467 ARHGAP4P98171 946 aa13.07□□□□□ -0.32
SHMT2-212ENST00000554467 RMND1Q9NWS8 449 aa13.07□□□□□ -0.32
SHMT2-212ENST00000554467 PNMA6AP0CW24 399 aaPredicted RBP13.06□□□□□ -0.32
SHMT2-212ENST00000554467 PPP4R3AQ6IN85 833 aa13.06□□□□□ -0.32
SHMT2-212ENST00000554467 GLIS3Q8NEA6 775 aa13.06□□□□□ -0.32
SHMT2-212ENST00000554467 GOPCQ9HD26 462 aa13.06□□□□□ -0.32
SHMT2-212ENST00000554467 SPDYE3A6NKU9 549 aa13.06□□□□□ -0.32
SHMT2-212ENST00000554467 FAM86B1E9PN63 330 aa13.06□□□□□ -0.32
SHMT2-212ENST00000554467 FAM86B2P0C5J1 330 aa13.06□□□□□ -0.32
SHMT2-212ENST00000554467 FXR2P51116 673 aaKnown RBP eCLIP13.06□□□□□ -0.32
SHMT2-212ENST00000554467 KRT31Q15323 416 aa13.06□□□□□ -0.32
SHMT2-212ENST00000554467 CDKAL1Q5VV42 579 aa13.06□□□□□ -0.32
SHMT2-212ENST00000554467 KRT79Q5XKE5 535 aa13.06□□□□□ -0.32
SHMT2-212ENST00000554467 CCDC150Q8NCX0 1101 aa13.06□□□□□ -0.32
SHMT2-212ENST00000554467 TSPYL1Q9H0U9 437 aa13.06□□□□□ -0.32
SHMT2-212ENST00000554467 POLD4Q9HCU8 107 aa13.06□□□□□ -0.32
SHMT2-212ENST00000554467 EXOC1Q9NV70 894 aa13.06□□□□□ -0.32
SHMT2-212ENST00000554467 POTEB3A0JP26 581 aa13.06□□□□□ -0.32
SHMT2-212ENST00000554467 POTECB2RU33 542 aa13.06□□□□□ -0.32
SHMT2-212ENST00000554467 NR1I3Q14994 352 aa13.06□□□□□ -0.32
SHMT2-212ENST00000554467 E4F1Q66K89 784 aaPredicted RBP13.06□□□□□ -0.32
SHMT2-212ENST00000554467 POTEBQ6S5H4 581 aa13.06□□□□□ -0.32
SHMT2-212ENST00000554467 ADSSL1Q8N142 457 aa13.06□□□□□ -0.32
SHMT2-212ENST00000554467 ZBED3Q96IU2 234 aaPredicted RBP13.06□□□□□ -0.32
SHMT2-212ENST00000554467 CNOT7Q9UIV1 285 aaKnown RBP13.06□□□□□ -0.32
SHMT2-212ENST00000554467 NPHP3-ACAD11A0A0J9YXS1 232 aa13.05□□□□□ -0.32
SHMT2-212ENST00000554467 E9PMD0 336 aa13.05□□□□□ -0.32
SHMT2-212ENST00000554467 MEIS1O00470 390 aa13.05□□□□□ -0.32
SHMT2-212ENST00000554467 SPECC1LQ69YQ0 1117 aa13.05□□□□□ -0.32
SHMT2-212ENST00000554467 SV2BQ7L1I2 683 aa13.05□□□□□ -0.32
SHMT2-212ENST00000554467 LARP4BQ92615 738 aaKnown RBP13.05□□□□□ -0.32
SHMT2-212ENST00000554467 TBC1D7Q9P0N9 293 aa13.05□□□□□ -0.32
SHMT2-212ENST00000554467 PGAP2Q9UHJ9 254 aa13.05□□□□□ -0.32
SHMT2-212ENST00000554467 RWDD2AQ9UIY3 292 aa13.05□□□□□ -0.32
SHMT2-212ENST00000554467 ARFGEF1Q9Y6D6 1849 aa13.05□□□□□ -0.32
SHMT2-212ENST00000554467 A0A1B0GTH6 734 aa13.05□□□□□ -0.32
SHMT2-212ENST00000554467 NKRFO15226 690 aaKnown RBP eCLIP13.05□□□□□ -0.32
SHMT2-212ENST00000554467 BMS1Q14692 1282 aaKnown RBP13.05□□□□□ -0.32
SHMT2-212ENST00000554467 LRRC41Q15345 812 aa13.05□□□□□ -0.32
SHMT2-212ENST00000554467 DLK2Q6UY11 383 aa13.05□□□□□ -0.32
SHMT2-212ENST00000554467 TRIM47Q96LD4 638 aa13.05□□□□□ -0.32
SHMT2-212ENST00000554467 ZCCHC17Q9NP64 241 aaKnown RBP13.05□□□□□ -0.32
SHMT2-212ENST00000554467 HACL1Q9UJ83 578 aa13.05□□□□□ -0.32
SHMT2-212ENST00000554467 KIAA1024Q9UPX6 916 aa13.05□□□□□ -0.32
SHMT2-212ENST00000554467 ZNF541Q9H0D2 1346 aa13.05□□□□□ -0.32
SHMT2-212ENST00000554467 INPP5BP32019 993 aa13.04□□□□□ -0.32
SHMT2-212ENST00000554467 TNIP1Q15025 636 aa13.04□□□□□ -0.32
SHMT2-212ENST00000554467 NBPF12Q5TAG4 269 aaPredicted RBP13.04□□□□□ -0.32
SHMT2-212ENST00000554467 FAM83AQ86UY5 434 aa13.04□□□□□ -0.32
SHMT2-212ENST00000554467 CCAR2Q8N163 923 aaKnown RBP13.04□□□□□ -0.32
SHMT2-212ENST00000554467 SRRTQ9BXP5 876 aaKnown RBP13.04□□□□□ -0.32
SHMT2-212ENST00000554467 VCPKMTQ9H867 229 aa13.04□□□□□ -0.32
SHMT2-212ENST00000554467 HOMER2Q9NSB8 354 aa13.04□□□□□ -0.32
SHMT2-212ENST00000554467 ADD3Q9UEY8 706 aaKnown RBP13.04□□□□□ -0.32
SHMT2-212ENST00000554467 KCNJ18B7U540 433 aa13.04□□□□□ -0.32
SHMT2-212ENST00000554467 N4BP3O15049 544 aa13.04□□□□□ -0.32
SHMT2-212ENST00000554467 RHOBTB3O94955 611 aa13.04□□□□□ -0.32
SHMT2-212ENST00000554467 ZRANB2O95218 330 aaKnown RBP eCLIP13.04□□□□□ -0.321e-7■□□□□ 9.4
SHMT2-212ENST00000554467 SLU7O95391 586 aaKnown RBP13.04□□□□□ -0.32
SHMT2-212ENST00000554467 KCNJ12Q14500 433 aa13.04□□□□□ -0.32
SHMT2-212ENST00000554467 NCAPH2Q6IBW4 605 aa13.04□□□□□ -0.32
SHMT2-212ENST00000554467 CPXCR1Q8N123 301 aa13.04□□□□□ -0.32
SHMT2-212ENST00000554467 GIMAP8Q8ND71 665 aaPredicted RBP13.04□□□□□ -0.32
SHMT2-212ENST00000554467 AGBL1Q96MI9 1066 aa13.04□□□□□ -0.32
SHMT2-212ENST00000554467 RAB34Q9BZG1 259 aa13.04□□□□□ -0.32
SHMT2-212ENST00000554467 POTEFA5A3E0 1075 aa13.04□□□□□ -0.32
SHMT2-212ENST00000554467 NRDCO43847 1150 aa13.04□□□□□ -0.32
SHMT2-212ENST00000554467 POTEIP0CG38 1075 aa13.04□□□□□ -0.32
SHMT2-212ENST00000554467 ZNF76P36508 570 aa13.04□□□□□ -0.32
SHMT2-212ENST00000554467 CYP4A11Q02928 519 aa13.04□□□□□ -0.32
SHMT2-212ENST00000554467 PRKG1Q13976 671 aa13.04□□□□□ -0.32
SHMT2-212ENST00000554467 POTEGQ6S5H5 508 aa13.04□□□□□ -0.32
SHMT2-212ENST00000554467 POTEEQ6S8J3 1075 aa13.04□□□□□ -0.32
SHMT2-212ENST00000554467 IRF2BP1Q8IU81 584 aa13.04□□□□□ -0.32
SHMT2-212ENST00000554467 MTMR14Q8NCE2 650 aa13.04□□□□□ -0.32
SHMT2-212ENST00000554467 KIAA0895Q8NCT3 520 aa13.04□□□□□ -0.32
SHMT2-212ENST00000554467 TEPSINQ96N21 525 aa13.04□□□□□ -0.32
SHMT2-212ENST00000554467 EFCC1Q9HA90 598 aa13.04□□□□□ -0.32
SHMT2-212ENST00000554467 POLR3GO15318 223 aaPredicted RBP13.03□□□□□ -0.32
SHMT2-212ENST00000554467 BTNL9Q6UXG8 535 aa13.03□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 20.8 ms